RetrogeneDB ID: retro_crei_9

Retrocopy location

• Organism: Chlamydomonas reinhardtii
• Coordinates: DS496205:116060..116648(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: CHLREDRAFT_181173
• Aliases: None
• Description: None

Sequence

>retro_crei_9
GGGGCTGCCACTGCCGCTGCGGCGCGGGGGGACTCCGCTGCCCTCAAGGCGGCGCTGGCGGCGGAGTTTGAGGAACTCGA
CACTGTACCATACACGGACGCGCAGGACGCCACGGTTGAGGCCATCCTGCGCCACCAAGCAGGCGTCATTGTGCTCACGG
GCGGGCCGGGCAGCGGCAAGACCTTCACCACCAAGAAGCTCACGCGCCAGCTGCGGCAGATGGGCAAGACCGTCATGCTG
ACCGCCAGCACCGGCGCCGCAGCCGTGCGCCTCAGCGCCTTCGCGACCACCAACCACGGCGCCTTCGACCTGCCCTGCGG
CACCGGCGCCATGTCCAGCTGGGTCATGGGCAGCTCGGATGTGCACCCCAAGGCGGAGGCATTGCGTGCAGCCGACGTGT
TCATCATCGACGAGTTCTCCATGATGACGGATGCACAGCTCACCCTTGTCCTCACCCGCATCTTCCACGCCTGCCATTAC
GCCACGCTCGACGAGATGCTGGCCAACAAGCTGATCATCCTGGTCGGCGACCACGCTCAGGTGTGTGTCGCGTTGGGCAA
ACAGAGAGCATGCGGGCACATACGCGCT

Alignment

ORF - retro_crei_9 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.68 %
• Parental protein coverage: 65.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GKYTPSEATDDGDELNPEAATFTFEDLDAMPYTDAQAATVEAILRHRAGVIVLTGGPGSGKTFTTKKLTR
          G..T...A..D...L....A...FE.LD..PYTDAQ.ATVEAILRH.AGVIVLTGGPGSGKTFTTKKLTR
Retrocopy GAATAAAARGDSAALKAALAA-EFEELDTVPYTDAQDATVEAILRHQAGVIVLTGGPGSGKTFTTKKLTR

Parental  QLRQMGKTVMLTASTGAAAVRLSAFATTNHGAFDLPSGNVAMRSWVLGSSDVHPKAEALRAADVFIIDEF
          QLRQMGKTVMLTASTGAAAVRLSAFATTNHGAFDLP.G..AM.SWV.GSSDVHPKAEALRAADVFIIDEF
Retrocopy QLRQMGKTVMLTASTGAAAVRLSAFATTNHGAFDLPCGTGAMSSWVMGSSDVHPKAEALRAADVFIIDEF

Parental  SMMTDAQLTLILTRIFHACHYATLDEMLADKLIILVGDHAQLPPVCNCAARAGHSAA
          SMMTDAQLTL.LTRIFHACHYATLDEMLA.KLIILVGDHAQ...........GH..A
Retrocopy SMMTDAQLTLVLTRIFHACHYATLDEMLANKLIILVGDHAQVCVALGKQRACGHIRA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Chlamydomonas reinhardtii was not studied using RNA-Seq expression data.

ChIP-Seq

Chlamydomonas reinhardtii was not studied using ChIP-Seq data.

EST

Chlamydomonas reinhardtii was not studied using EST data.

TSS

Chlamydomonas reinhardtii was not studied using FANTOM5 data.

Lab

retro_crei_9 was not experimentally validated.

Homology

Retrocopy orthology:

Chlamydomonas reinhardtii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Chlamydomonas reinhardtii	CHLREDRAFT_181173	1 retrocopy	retro_crei_9 ,