RetrogeneDB ID: | retro_chof_687 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | scaffold_135120:2934..3148(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C12orf39 | ||
| Ensembl ID: | ENSCHOG00000008256 | ||
| Aliases: | None | ||
| Description: | chromosome 12 open reading frame 39 [Source:HGNC Symbol;Acc:28139] |
Retrocopy-Parental alignment summary:
>retro_chof_687
TATCTCTCCTTTGCAGAGGGGCACTGCTTTATCTCTGACCAGAGCTGGAGGAAGGACCTCCCCAACTGGCCACCACTGGA
AAGGTGTAGCCCATTCCTAACCACTAACTCTTCCAGAGGCAACAGCTCTGTTACTCACTTCCTGTCAAAAACACAAGAAA
CCTGGAGGAGAAAACTTTAAGCAAACAAGGTTCTTGGAAGACAGTTTGCTAAAC
ORF - retro_chof_687 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.64 % |
| Parental protein coverage: | 61.74 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | YLKGAQGRRFISDQSRRKDLSDRPPPERRSP-YSQPLTLPEAAALLLASWQKPQEAGEENF-ETRFLEDS |
| YL..A.G..FISDQS.RKDL....PP..R....S.PLTLPEA.ALLL.S.QK....G.ENF..TRFLEDS | |
| Retrocopy | YLSFAEGHCFISDQSWRKDLPNW-PPLERCS>HS*PLTLPEATALLLTSCQKHKKPGGENFKQTRFLEDS |
| Parental | LLS |
| LL. | |
| Retrocopy | LLN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_687 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000008256 | 1 retrocopy |
retro_chof_687 ,
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