RetrogeneDB ID: | retro_chof_671 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | scaffold_133732:13..1192(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MYBL2 | ||
| Ensembl ID: | ENSCHOG00000000933 | ||
| Aliases: | None | ||
| Description: | v-myb avian myeloblastosis viral oncogene homolog-like 2 [Source:HGNC Symbol;Acc:7548] |
Retrocopy-Parental alignment summary:
>retro_chof_671
AGGCTAGGGAAGCAGTGCCGTGATCACCGGCACCACCGCTTCAACACTGAGGTGAAGCAGTCCTGCTGGACTCAGGAGGA
GGACCACACCATCAATGAGGCCCTCAGGGTGCTGGGCAACTGCTGGGCTCAGAGTGCCAAGATGCTGCCAGGGAAGAAGA
CAATGCCATGAGGAATCCATGGAGCTCCACCATCAAAAAGAAGGTGGGCATGGGAGGTCTCCTGAGAGAGTCCAGAGACT
GCAAGCCGCCCACCGTGTACTTGCTGCTGGAGATCAAAGACAAGGATGGCTGCCAGAGGGGCCACTCGGTGGAAGGCCAG
GGAAGTCTTGTGGCCACCCAGCCCCCAGCACCCCTGACCATGAAGGAAGAAGACAGCAGCGAGGAGGAGGCCACAGCAAC
CATCGTGTCTAACGAGCAGGGGCCTAGCCCTGCAGAGCCGGATAGAGTGCAGACGCCAGAGCCCATGGAGGAGTTCCCCA
AGCGGGAAGAGCAGGAGAGCTTCCTCCAGAAATGCACCTGCCCTACAAGAGGGTAGTGGAGGCTGCCAACATCTTCAATC
CTGCTGTGTGGTCCAGCCTCACTGAAGCCCTGGACTTGGTGGAGCTGGACCCTGATGCCTGGTGTGAGCTGAGATTTGAC
CTCCCTGAGGAGCTGTCTGCAGAAGGTAGCCCAGTGCAACCACCAGCACCACATCAGCAGCAGGCACTGGCACCCTGCCA
GCTTGCCGTCCTGGTACTCAGAGTGACTGAGTACCACCTGGACAGTCACACCATCTCAGGCCTGAGCCAGCACAGCCGAA
GTGAGCTGATCCCCATTTCCCTGAGCCCTGGAGTGGAGGGTTCAAGCCTTGGCACACCACTCTTGGTTCTCAAGCAGCAA
AAGAAGCATGCCACTATGCCTGCATCATGGAGAACAGCACCAGTCTGTCCTTCCTGGACCCCTGCAACAACCCCACCCCC
AAGAGCATGCCCATCAAGACCCTGCCCTTCTTGCCCTCCCAGTTTCTGAAATTCTGGAATTAACAGGACACACTGGAGCT
GCAGAGCCCCTTGCTGATGTCCACCCCAGTGTGCAGCCAGAAAATGGTGGTAACTACATCCCTGTACCGAGATAAGGTGC
CGCTGCATAAGAAACATGTCACCCCAGAGCAGATACTGCATGGGCAACACTCCCCACAT
ORF - retro_chof_671 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.7 % |
| Parental protein coverage: | 58.06 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRT-DNAVKNHWNSTIKRKV |
| RLGKQCR...H...N.EVK.SCWT.EED..I.EA..VLGN.WA..AKMLPG...DNA..N.W.STIK.KV | |
| Retrocopy | RLGKQCRDHRHHRFNTEVKQSCWTQEEDHTINEALRVLGNCWAQSAKMLPGKK<DNAMRNPWSSTIKKKV |
| Parental | DTGGFLSESKDCKPP-VYLLLELEDKDGCQSVHPAEGQGGLVATWPLAPLAMKEEESSEEEATAATTSEE |
| ..GG.L.ES.DCKPP.VYLLLE..DKDGCQ..H..EGQG.LVAT.P.APL.MKEE.SSEEEATA...S.E | |
| Retrocopy | GMGGLLRESRDCKPPTVYLLLEIKDKDGCQRGHSVEGQGSLVATQPPAPLTMKEEDSSEEEATATIVSNE |
| Parental | QGPIPAELDRVWTPEPMEEFPKREDQECF-PPAMSLPYKWVVEATNLLSPAVGSSFSEA-DLIESDPDAW |
| QGP.PAE.DRV.TPEPMEEFPKRE.QE.F.PP.M.LPYK.VVEA.N...PAV.SS..EA.DL.E.DPDAW | |
| Retrocopy | QGPSPAEPDRVQTPEPMEEFPKREEQESF<PPEMHLPYKRVVEAANIFNPAVWSSLTEALDLVELDPDAW |
| Parental | CDLSKFDLPEEPSAEGSVNSSPVQPQAPRQHLALAHRQPAVLVPSVTEYRLDGHTISDLSRSSRGELIPI |
| C.L..FDLPEE.SAEGS....PVQP.AP.Q..ALA..Q.AVLV..VTEY.LD.HTIS.LS..SR.ELIPI | |
| Retrocopy | CEL-RFDLPEELSAEGS----PVQPPAPHQQQALAPCQLAVLVLRVTEYHLDSHTISGLSQHSRSELIPI |
| Parental | SPSTEVGGSGFGTPPSVLKRQKKRRVALSPVTENSASLSFLDCNSLTPKSTP-VKTLPFSPSQFLNFWNK |
| S.S..V.GS..GTP..VLK.QKK...............S........P...P..KTLPF.PSQFL.FWN. | |
| Retrocopy | SLSPGVEGSSLGTPLLVLKQQKKHATMPASWRTAPVCPSWTPATTPPPRACP<IKTLPFLPSQFLKFWN* |
| Parental | QDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSMDNTPH |
| QDTLEL.SP.L.STPVCSQK.VVTT.L.RDK.PLH.KH...VTP.Q.......PH | |
| Retrocopy | QDTLELQSPLLMSTPVCSQKMVVTTSLYRDKVPLHKKH---VTPEQILHGQHSPH |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_671 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000933 | 1 retrocopy |
retro_chof_671 ,
|
| Oryctolagus cuniculus | ENSOCUG00000005775 | 1 retrocopy |