RetrogeneDB ID: | retro_chof_490 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | scaffold_113885:2089..2924(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AQP10 | ||
| Ensembl ID: | ENSCHOG00000012951 | ||
| Aliases: | None | ||
| Description: | aquaporin 10 [Source:HGNC Symbol;Acc:16029] |
Retrocopy-Parental alignment summary:
>retro_chof_490
ATGGCCCATACTCTGTGCCTGGCTGCAGTCAGGGACCAGTTCTGGATTCAGAGCCTCTTGGCCTGACAGTGCCTGGCAGA
GTTTCTGGGTGTGTTGTGGTCCTGCCCCTCACTCAGGGAGCTGTAGCCCAGGCTGTCACCAGAGAAGAAACAAAGGCAAC
GTCTTCACCATGTTTCTGGCTGGCTCTCTGGCCATGATGGTAACCATCTACATGGATGGCAATGTCTCAGGGTTTGCCAA
CCTGAATCCAGCCTTTTCCCTGGCCATATGTCTCCTGGGCTGCCTCCCCTGGGCCAAAATCCCCATTTACACCTTGGTGC
AGCTGCTATCTGCTTTTGTGCCTCAGGAGCCACCATCTATGTCCTATGATGCCCTACAGAACTATACAAGTGGGAACCTG
AGAGTGTCTGGCCCCAAGGAGACAGATTCTGTCTTTGCTACCTACCCTGCCCCCTATCTGTCCCTGAACAATGGCTTTGT
GGATCAGGTTCTGGGCACTGGGATCCTGACTGTGAGGATTTTGGCCATCCTGGACACCTGGAACAAAGAAGCGCCTTCAG
GTCTGGAGGCTGTGGCAGTGGGGCTGCTGATCCCAGTCACTGGGCCATCCATGGGTGCCAACTGTGGGTTCCAGCTGAAC
CCTGCCTGATCTGGGCCCCCAGCTTTTTACCTGTGTAGCTGGCTGGGGCTCTGAAGTCTTCAGTGCTGGTCATTGCTGGT
GGAGGGTGCCTGTGATAGCCCCCTGGTGGGTACCATGCTAGGCACAGCCACATACCAGCTGCTGCTCACTCTGCACCACC
CTGAGGACTTGGAGCAAACTCAGGATCTCAGACTT
ORF - retro_chof_490 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 70.53 % |
| Parental protein coverage: | 93.33 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | MAHTLSLAAVRDRFRIRSLLARQCLAEVLGVF-VLMLLTQGAVAQAVTSGETK-GNFFTMFLAGSLAVTI |
| MAHTL.LAAVRD.F.I.SLLA.QCLAE.LGV..V...LTQGAVAQAVT..ETK.GN.FTMFLAGSLA... | |
| Retrocopy | MAHTLCLAAVRDQFWIQSLLA*QCLAEFLGVL<VVLPLTQGAVAQAVTREETK<GNVFTMFLAGSLAMMV |
| Parental | AIYVGGNVSG-AHLNPAFSLAMCLLGRLPWVKLPIYILVQLLSAFCASGATYALYYDAIQNYTGGNLTVS |
| .IY..GNVSG.A.LNPAFSLA.CLLG.LPW.K.PIY.LVQLLSAF..........YDA.QNYT.GNL.VS | |
| Retrocopy | TIYMDGNVSGFANLNPAFSLAICLLGCLPWAKIPIYTLVQLLSAFVPQEPP-SMSYDALQNYTSGNLRVS |
| Parental | GPKETASIFATYPAPYLSLNNGILDQXXXXXXXIVGILAILDTRNKGVPAGLEPVAVGLLILVIGLSMGA |
| GPKET.S.FATYPAPYLSLNNG..DQ........V.ILAILDT.NK..P.GLE.VAVGLLI.V.G.SMGA | |
| Retrocopy | GPKETDSVFATYPAPYLSLNNGFVDQVLGTGILTVRILAILDTWNKEAPSGLEAVAVGLLIPVTGPSMGA |
| Parental | NCGFPINPARDLGP-RLFTYIAGWGSEVFSAGNGWWWVPVVA-PLVGAMLGTAVYQLMVALHHPEDLEPA |
| NCGF..NPA...GP..LFT..AGWGSEVFSAG..WW.VPV.A.PLVG.MLGTA.YQL...LHHPEDLE.. | |
| Retrocopy | NCGFQLNPA*S-GP>QLFTCVAGWGSEVFSAGHCWWRVPVIA<PLVGTMLGTATYQLLLTLHHPEDLEQT |
| Parental | QDLGL |
| QDL.L | |
| Retrocopy | QDLRL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_490 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000012951 | 2 retrocopies |
retro_chof_2573, retro_chof_490 ,
|