RetrogeneDB ID: | retro_chof_2097 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | scaffold_48808:5175..5751(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SH3YL1 | ||
| Ensembl ID: | ENSCHOG00000013307 | ||
| Aliases: | None | ||
| Description: | SH3 domain containing, Ysc84-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:29546] |
Retrocopy-Parental alignment summary:
>retro_chof_2097
TGGTCTGCACCTCCAGCAGTTGGGGTAGCTGGGCTTGGTGGAGGATTTAAAATAGGAATTGAGGTATCAGATCTGGTAAT
AATTCTGAATTACGACAGAGCAGTAGAAGCCTTTGCAAAAGGTGGTAACCCAACATTTGGAGGGAATTTTACTGTGGCGG
TTCAGCCCTTGGGAAGGAATTTGGAAGGAAACGTAGCCTTAAGAAGCTCTGCAGCTGTCTTCACACATTGTAAATCAAGA
GGACTGTTCGCTGGCATATCTTTAGAAGGTGGCTATTTGACAGAGAGAAAAAATTCAAATCAAAAATTTTATTGTCAAGG
TACTCATGCTTATGATGTTTTACTTGGAGATATACCACAGTCAGCTCAAGCAGAAGATTTTCATGAAGTTCTTGATTACT
TTGCTGAAAAGTATGAAAATGAAGAACAACGGATCGATGCAAGAAAAGAGGCAAGGGAACAGAGAAAGGCTTTCGCTAAA
AAACTGCCTCCAAAAGTATTGCCAAGACTACAGCGATCACCTGCACCAGTCCAGCTGAACTCTGGCTCTCAAAGTAACAG
AAATGAATATAAGCTC
ORF - retro_chof_2097 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.21 % |
| Parental protein coverage: | 56.3 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | WSAPSAIGIAGLGGGFEIGIEVSDLVIILNYDRAVEAFAKGGNLTLGGNLTVAVGPLGRNLEGNLALRSS |
| WSAP.A.G.AGLGGGF.IGIEVSDLVIILNYDRAVEAFAKGGN.T.GGN.TVAV.PLGRNLEGN.ALRSS | |
| Retrocopy | WSAPPAVGVAGLGGGFKIGIEVSDLVIILNYDRAVEAFAKGGNPTFGGNFTVAVQPLGRNLEGNVALRSS |
| Parental | AAVFTYCKSRGLFAGLSLEGSCLIERKETNRKFYCQDIRAYDILFGDIPRPAQAEDLYEILDSFTEKYEN |
| AAVFT.CKSRGLFAG.SLEG..L.ERK..N.KFYCQ...AYD.L.GDIP..AQAED..E.LD.F.EKYEN | |
| Retrocopy | AAVFTHCKSRGLFAGISLEGGYLTERKNSNQKFYCQGTHAYDVLLGDIPQSAQAEDFHEVLDYFAEKYEN |
| Parental | EEQRINARKAAREQRKASAKELPPKPLSRPQQSSAPVQLNSGSQSNRNEYKL |
| EEQRI.ARK.AREQRKA.AK.LPPK.L.R.Q.S.APVQLNSGSQSNRNEYKL | |
| Retrocopy | EEQRIDARKEAREQRKAFAKKLPPKVLPRLQRSPAPVQLNSGSQSNRNEYKL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2097 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013307 | 1 retrocopy |
retro_chof_2097 ,
|
| Dasypus novemcinctus | ENSDNOG00000003742 | 1 retrocopy |