RetrogeneDB ID: retro_chof_120

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: GeneScaffold_2570:2735..3359(-)
• Located in intron of: ENSCHOG00000012334

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GPR137B
• Ensembl ID: ENSCHOG00000006090
• Aliases: None
• Description: G protein-coupled receptor 137B [Source:HGNC Symbol;Acc:11862]

Sequence

>retro_chof_120
TTACCACTCTACCTGGCCTCGCTCTTCATCAGCCTCATTTTCCTGTTGGTGAATTTAACCTGTGCGGTGCTGGTAAAGGC
AGGAAATTGGGAGAGGAAGGTTATCGTCTCAGTGCGAGTGGCTGTTAATGATACTCTCTTTGTACTGTGTGCCGTCTCTC
TCTCCATCTGTCTCTACAAAATTTCTAAGATGTCCTTAGTCAACATCTACTTGGAGTCTAAGGGCTCTTCTGTGTGTCAA
GTGACAGCCATTGGTGTGACCATCATCCTGCTTTATACATCTCGAGCCTGCTACAACCTGTTCATCTTATCATTTTCTCA
GAACAAGAATGTCCATTCCTTTGATTACGACTGGTACAATGTATCAGACCAGGCAGATTTGAAGAACCAGTTGGGAGATG
CCGGATATGTGGTATTTGGAGTGGTCCTTTTTGTGTGGGAACTCTTACCTACTACCTTAGTAGTTTACTTCTTCCGAGTT
AGAAACTCTACAAAGGACCTTACCAACCCTGGAATGCTCCCCAGCCATGGATTCAATCCCAGGTCTTATTTCTTCGACAA
CCCTCGAAGATATGACAGTGATGATGACCTTGCCTGGAACATCGCCCCTCAGGGACTTCAGGGA

Alignment

ORF - retro_chof_120 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.08 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LPLYLASLFISLIFLLVNLTCAVLVKAGNWERKVIVSVRVAVNDTLFVLCAVSLSICLYKISKMSLANIY
          LPLYLASLFISLIFLLVNLTCAVLVKAGNWERKVIVSVRVAVNDTLFVLCAVSLSICLYKISKMSL.NIY
Retrocopy LPLYLASLFISLIFLLVNLTCAVLVKAGNWERKVIVSVRVAVNDTLFVLCAVSLSICLYKISKMSLVNIY

Parental  LESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQNKNVHSFDYDWYNVSDQAD-KNQ-GDAGYVVFG
          LESKGSSVCQVTAIGVT.ILLYTSRACYNLFILSFSQNKNVHSFDYDWYNVSDQAD.KNQ.GDAGYVVFG
Retrocopy LESKGSSVCQVTAIGVTIILLYTSRACYNLFILSFSQNKNVHSFDYDWYNVSDQADLKNQLGDAGYVVFG

Parental  VVLFVWELLPTTLVVYFFRVRNSTKDLTNPGMLPSHGFNPRSYFFDNPRRYDSDDDLAWNIAPQGLQG
          VVLFVWELLPTTLVVYFFRVRNSTKDLTNPGMLPSHGFNPRSYFFDNPRRYDSDDDLAWNIAPQGLQG
Retrocopy VVLFVWELLPTTLVVYFFRVRNSTKDLTNPGMLPSHGFNPRSYFFDNPRRYDSDDDLAWNIAPQGLQG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_120 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000006090	1 retrocopy	retro_chof_120 ,
Monodelphis domestica	ENSMODG00000008061	1 retrocopy	retro_mdom_440,