RetrogeneDB ID: | retro_chof_1189 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | scaffold_220940:2..575(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RIT2 | ||
| Ensembl ID: | ENSCHOG00000007212 | ||
| Aliases: | None | ||
| Description: | Ras-like without CAAX 2 [Source:HGNC Symbol;Acc:10017] |
Retrocopy-Parental alignment summary:
>retro_chof_1189
GGTGCTGGTGGGGGAGGGGACAGGCCATGACCACGAGTTCGTCTGCCACTGAGTCTCAGAAGGTCACGACCCCACCATAG
AAGATGCTTATGAAATCCAGGTCCGCATTGATGATGAGCCTTGCCATCCGGACATTTTGGATACAGCTGGACTGACAGAG
TTTACGGCCACGCGGAATCAGTATAGGAGGGCAGGAGAAGGGTTTGCCATCTGTTATTCTGTCAGGGATCGTCGAAGTTT
CTGTGACCTTCGGGAGTTGAAACAGCTTATTCATCGTGTTTGATGTACTGATGATACACCTGTGGTTCTTGTGGGAAACA
GGTCTGACCTGAAACAGCTAAGACAGGTTACCAGAGAAGAAGGATTGGCTTTGGCCCTAGAATTCAGCTGTCCCTTTTTC
GAGACATCTGCTGCAAAGTGCCACTACACTGATGATGTCTCCATATCCTTGTATGGGAGATACAGAGGAAAGAAAAGGAG
GCAGTACTGGCCATGGAGAAAAAATCTAAACCCTAAAGCAGTGTGTGGAAGAGGCTAAAATCACTGTTCCAGAAGAAGAG
AGATTCAGTAACT
ORF - retro_chof_1189 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.9 % |
| Parental protein coverage: | 88.02 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | GAGGVGK-SAMTM-QFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEG |
| GAGG.G...AMT...F..H.....HDPTIEDAY..QVRID.EP...DILDTAG..EFTA.R.QY.R.GEG | |
| Retrocopy | GAGGGGD<QAMTT<EFVCH*VSEGHDPTIEDAYEIQVRIDDEPCHPDILDTAGLTEFTATRNQYRRAGEG |
| Parental | FIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLNLARDYNCAFFETSA |
| F.ICYSV.DR.SF......K.LI..V..T...P.VLVGN..DL.Q.RQV..EEGL.LA....C.FFETSA | |
| Retrocopy | FAICYSVRDRRSFCDLRELKQLIHRV*CTDDTPVVLVGNRSDLKQLRQVTREEGLALALEFSCPFFETSA |
| Parental | ALRFCIDD-AFHGLVREIRKKESTPSL-MEKKLKRKDSLWKKLKGSLKKKRENMT |
| A.....DD...H.LV.EI..KE....L.MEKK.K...S.WK.LK....KKR...T | |
| Retrocopy | AKCHYTDD<CLHILVWEIQRKEKEAVLAMEKKSKP*SSVWKRLKSLFQKKRDSVT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1189 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007212 | 1 retrocopy |
retro_chof_1189 ,
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