RetrogeneDB ID: | retro_bdis_31 | ||
Retrocopy location | Organism: | Purple false brome (Brachypodium distachyon) | |
| Coordinates: | 1:481453..481993(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | BRADI1G00600 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | BRADI2G08680 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_bdis_31
ATGGCAGGAATCGGCCGGAACATGGTGTCCCCCTTGCTGGTCCTCAACCTCATCATGTACATCATCGTGATCGGCCTCGC
GAGCTGGAACCTCAACCACCACATCAACGGCCTCAACCACCCGGGCGCCGTCGGCAACGGCGCCACCTTCTACTTCCTCG
TCTTCGCCATCCTCGCCGGCGTCGTCGGCGCAGCCTCCAAGCTCGCCGGCATCCACCACGTCCGCTCGTGGCGCGGCGAC
AGCCTCGCCGCCACCGCGGGTTCCGCGCTCGTCGCGTGGGCCATCACGGCGCTCGCGTTCGGGTTGGCGTGCAAGGAGAT
CGGCATCGGTGGGTACAGGGGATGGCGCCTGCGCACCCTCGAGGCCTTCATCATCATACTCACGTTCACGCAGCTGATCT
ACGTCGCGATGCTTCACACGGGGCTTTTCGGGAACCAGTTCTCTAACGGTGCCGGGTATGGCGGGGAGCATGGTGGCTAT
GGCGATCATCACAACAAGGGGCCTGCCGGCATGGGCACCGCTGCCGCCGCCAGAGTCTGA
ORF - retro_bdis_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.02 % |
| Parental protein coverage: | 57.74 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | IGNFATGFFVLFALLAAVVGAASCVVGFMHLRFWNYHSMQPAASLGLVAWALTVLAMGLACQEISF-DRR |
| .GN.AT..F..FA.LA.VVGAAS...G..H.R.W...S....A...LVAWA.T.LA.GLAC.EI.....R | |
| Retrocopy | VGNGATFYFLVFAILAGVVGAASKLAGIHHVRSWRGDSLAATAGSALVAWAITALAFGLACKEIGIGGYR |
| Parental | NAKLGTMEAFTIVLSVTQLVYVLAIHGG |
| ...L.T.EAF.I.L..TQL.YV...H.G | |
| Retrocopy | GWRLRTLEAFIIILTFTQLIYVAMLHTG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Brachypodium distachyon was not studied using RNA-Seq expression data.
Brachypodium distachyon was not studied using ChIP-Seq data.
Brachypodium distachyon was not studied using EST data.
Brachypodium distachyon was not studied using FANTOM5 data.
retro_bdis_31 was not experimentally validated.
Retrocopy orthology:
Brachypodium distachyon does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Brachypodium distachyon | BRADI2G08680 | 1 retrocopy |
retro_bdis_31 ,
|