RetrogeneDB ID: | retro_apla_11 | ||
Retrocopy location | Organism: | Duck (Anas platyrhynchos) | |
| Coordinates: | KB742818.1:1426973..1427365(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C10orf107 | ||
| Ensembl ID: | ENSAPLG00000010881 | ||
| Aliases: | None | ||
| Description: | chromosome 10 open reading frame 107 [Source:HGNC Symbol;Acc:28678] |
Retrocopy-Parental alignment summary:
>retro_apla_11
CTGGAAGAATTTCTGAATTTTAAACAGTTAAAGACATCTTTGAAGGAAGCTATTTTGCTAGACTATTATATTGCCAGATT
TTGGTGGGCTAAAGAAGAGAACTTCAGTCTTGTGCAGCTCTCAGGATCCATGGATCTATTAAACTTCCTGTTGGAGAGCC
TCCATGACAAACATATGACCTTAGGAGATAACATAAAGGAACTTGGAAAAGCAATGGCTGGAACAGGAGAAACTATTCAG
AAAGAAGTGAAGACATCCATGCTGACATGGATGTCTTCAGCATTGAGCAAGCCAAAGCAATCATTGATTACTTGAATATC
AGCTAATTTAAACCCTATAAATTGTATGAATATCTCTTCCACAGTCCTAGAGAAGAACTTGTGATAAGTAAT
ORF - retro_apla_11 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.85 % |
| Parental protein coverage: | 76.83 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LEEFLNFKQLKTSLKEDIL-DYYTAGFWWAKEKNFSLVQLSGFMDLLNFLLENLRDKHMTLEDNIKELGK |
| LEEFLNFKQLKTSLKE.IL.DYY.A.FWWAKE.NFSLVQLSG.MDLLNFLLE.L.DKHMTL.DNIKELGK | |
| Retrocopy | LEEFLNFKQLKTSLKEAILLDYYIARFWWAKEENFSLVQLSGSMDLLNFLLESLHDKHMTLGDNIKELGK |
| Parental | AMAGIGET-DSERSGD----MDVFSIEQAKAIIDYLNSSLFKPYKLYEHLFHSPREELVISN |
| AMAG.GET..SERS.D....MDVFSIEQAKAIIDYLN.S.FKPYKLYE.LFHSPREELVISN | |
| Retrocopy | AMAGTGET<YSERSEDIHADMDVFSIEQAKAIIDYLNIS*FKPYKLYEYLFHSPREELVISN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Anas platyrhynchos was not studied using RNA-Seq expression data.
Anas platyrhynchos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_apla_11 retrocopy.
Anas platyrhynchos was not studied using FANTOM5 data.
retro_apla_11 was not experimentally validated.
Retrocopy orthology:
Anas platyrhynchos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anas platyrhynchos | ENSAPLG00000010881 | 1 retrocopy |
retro_apla_11 ,
|