RetrogeneDB ID: | retro_amel_593 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL192515.1:2105640..2106033(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSAMEG00000010618 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_amel_593
GAAGAAGAGGTGAGAACGACCCATGTACCGACCAAAGCCCACATACTGCTGCACGCCCGTGTCCAGCACCTATGTCCCCC
GCTGTCACCACCATGCCCAAGAAAGGCTGGAAAGAGAATGTTAAAGGAGATAAAACCGAGGTGAAAGATGAGCCACAGAG
AAGATCTGCAAGATTATCTCCTAAACGTGCTCCTCCAAAGCCAGAGCCCAAACCTAAAAAGGCCCCTTCAAAGAAGGGAG
GGAAGGTACCCAAAGGGAAAAGGGGGAAAGCTGATGTTGGCAAGGATGGGAATAACCCTGCAAAACAGAGATGATTTGCA
GACCAGACACAGAAAGCTGATGGTGCTGGAGATGCCAAGTGAAGCATGAGCAGGTTTGATAACTGTGTACTTC
ORF - retro_amel_593 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.15 % |
| Parental protein coverage: | 99.21 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | EEEARTTPGPAKARAPLHPRVQRLVP---PPSPPCPRERLKGMLK---EIKPREDLQGYLLNLLLQSQSP |
| EEE.RTT..P.KA...LH.RVQ.L.P...PP.P.....R.....K.......REDLQ.YLLN.LLQSQSP | |
| Retrocopy | EEEVRTTHVPTKAHILLHARVQHLCPPLSPPCPRKAGKRMLKEIKPR*KMSHREDLQDYLLNVLLQSQSP |
| Parental | SLKRPLQRRERRYPKGKRGKLMLARMGITLQKTETPKQTRHRKLKVLEMPSELCAFLITVYF |
| .LKRPLQRRE.RYPKGK.GKLMLARMGITLQ......QTRHRKL.VLEMPSE..A.LITVYF | |
| Retrocopy | NLKRPLQRREGRYPKGKGGKLMLARMGITLQNRD-DLQTRHRKLMVLEMPSEA*AGLITVYF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_593 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_593 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 7 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010618 | 7 retrocopies |
retro_amel_1286, retro_amel_1287, retro_amel_1351, retro_amel_1557, retro_amel_1780, retro_amel_416, retro_amel_593 ,
|