RetrogeneDB ID: retro_amel_501

Retrocopy location

• Organism: Panda (Ailuropoda melanoleuca)
• Coordinates: GL192479.1:497546..498632(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KYNU
• Ensembl ID: ENSAMEG00000013126
• Aliases: None
• Description: kynureninase [Source:HGNC Symbol;Acc:6469]

Sequence

>retro_amel_501
CATACCCTAGGAAAACGTCCTTGGATTACAGGAGATGAGACTATTTTAGGACTTATGAATGACAGTGTAGGAGCCAATGA
GAAAGAAATAGCCCTAATGAATGGTTTTGATGTTAATTTACATCTTCTGTTATCCTTTTTTAAGCCGACACCAAAACGGT
ATAAAATTCTGGAAGCCAAAGCCTTCCTTCAGATCATTATGCTATTGAGTCACAGTTTCAACTTCATGGACTTAACACTG
AGGAAAGTATGCAGATGGTAAAGCCAAGAGAGGTGGAAGAAAACATTGAGAATAGAGGATATCCTTGAAGTAACTGAGAA
GGAGGGAGACTCAATTGCAGTAATCCTGTTCAGTGGGCTGTATTTTTACACTGCACAGTTCTTTAATATACCTGCCATCA
CAAGAGCTGGACAAGCAAAGGGTTGTTTTGTTGGCTTTGATCTAGCACATGCAGTTGGAAATGTTAAACTCCGCTTACAT
GACTGGGGAGTTGATTTTGCCTGCTGGTGCCCCTACAAGTATTTAAACTCAGGAGCAGGAGGTCTTGCTGGTACCTTTGT
CCATGAAAAGCATGCCCATACAATTAAACCTGTGTTAGTGGGATAGTTTGGCCATGAACTCAGCACCTGATTTAAGACGG
AAAACAAACTGCAGTAAATCCATGGGATCAGTGGATTTCAACTTTCAAAGCCTCCTATTTTGTCGGTCGGTCCCTTACAC
GCTAGTTTAGAGATCTTAAAGCAAGCAACTATGAAAACATTGAGGAGAAAATCTATTTTGTTAACTGGTTATCTGGAATA
CTTGGTCAAGCATTACTATAACAAAGATAGAGCAGATACTAAGAAACCATTTGTGAACATAATTACTCCATCCTGCATAG
AGGATCATGGCTGCCAGCTCACACTGACATTTTCTGTTCCAATAAAATGTGTCTTCCAAGAACTAGAAAAACAAGGAGTG
GTTTGTGACAGGAGAGAACCAAATGGCATCCAAGTGGCTCCAGTTCCTCTCTACAACTCTTTTCATGATGTTTATAAGTT
TATCAATCTGCTCGCTTCTGCACTTGACTCTGCAGAAACCAAAAAT

Alignment

ORF - retro_amel_501 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.07 %
• Parental protein coverage: 78.28 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  HDLGKRPWITGDETIVGLMNDIVGANEKEIALMNGLTVNLHLLLLSFFKPTPKRYKILLEAKAF-PSDHY
          H.LGKRPWITGDETI.GLMND.VGANEKEIALMNG..VNLHLLL.SFFKPTPKRYKIL.EAKAF.PSDHY
Retrocopy HTLGKRPWITGDETILGLMNDSVGANEKEIALMNGFDVNLHLLL-SFFKPTPKRYKIL-EAKAF<PSDHY

Parental  AIESQLQLHGLNIEKSMRIIKPREGEE-TLRIEDILEVIEKEGDSIAVILFGGLHFYSGQLFNIPAITRA
          AIESQ.QLHGLN.E.SM...KPRE.EE.TLRIEDILEV.EKEGDSIAVILF.GL.FY..Q.FNIPAITRA
Retrocopy AIESQFQLHGLNTEESMQMVKPREVEE>TLRIEDILEVTEKEGDSIAVILFSGLYFYTAQFFNIPAITRA

Parental  GQAKGCFVGFDLAHAVGNVELHLHDWGVDFACWCSYKYLNSGAGGLAGTFVHEKHAHTIKPALVGWFGHE
          GQAKGCFVGFDLAHAVGNV.L.LHDWGVDFACWC.YKYLNSGAGGLAGTFVHEKHAHTIKP.LVG.FGHE
Retrocopy GQAKGCFVGFDLAHAVGNVKLRLHDWGVDFACWCPYKYLNSGAGGLAGTFVHEKHAHTIKPVLVG*FGHE

Parental  LSTRFKMDNKLQLSPGVSGFRISNPPILLVCSLHASLEIFKQATMKALRRKSILLTGYLEYLIKHYYNKD
          LST.FK..NKLQ...G.SGF..S.PPIL.V..LHASLEI.KQATMK.LRRKSILLTGYLEYL.KHYYNKD
Retrocopy LST*FKTENKLQ*IHGISGFQLSKPPILSVGPLHASLEILKQATMKTLRRKSILLTGYLEYLVKHYYNKD

Parental  KADTKKPFVNIITPSSIEDRGCQLTLTFSLPIKCVFQELEKRGVVCDKREPNGIRVAPVPLYNSFHDVYK
          .ADTKKPFVNIITPS.IED.GCQLTLTFS.PIKCVFQELEK.GVVCD.REPNGI.VAPVPLYNSFHDVYK
Retrocopy RADTKKPFVNIITPSCIEDHGCQLTLTFSVPIKCVFQELEKQGVVCDRREPNGIQVAPVPLYNSFHDVYK

Parental  FINLLASALDSAEVKN
          FINLLASALDSAE.KN
Retrocopy FINLLASALDSAETKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Ailuropoda melanoleuca was not studied using RNA-Seq expression data.

ChIP-Seq

Ailuropoda melanoleuca was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_amel_501 retrocopy.

TSS

Ailuropoda melanoleuca was not studied using FANTOM5 data.

Lab

retro_amel_501 was not experimentally validated.

Homology

Retrocopy orthology:

Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013126	1 retrocopy	retro_amel_501 ,
Loxodonta africana	ENSLAFG00000002172	1 retrocopy	retro_lafr_329,
Microcebus murinus	ENSMICG00000017770	1 retrocopy	retro_mmur_940,
Mustela putorius furo	ENSMPUG00000003685	1 retrocopy	retro_mputfur_503,
Pongo abelii	ENSPPYG00000012827	1 retrocopy	retro_pabe_1439,