RetrogeneDB ID: | retro_acar_183 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | GL343352.1:584949..585723(+) | ||
| Located in intron of: | ENSACAG00000000891 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BAMBI | ||
| Ensembl ID: | ENSACAG00000007580 | ||
| Aliases: | None | ||
| Description: | BMP and activin membrane-bound inhibitor homolog [Source:UniProtKB/TrEMBL;Acc:G1KGS2] |
Retrocopy-Parental alignment summary:
>retro_acar_183
CGCCACTCCAGCTTCCTCTTCGTCTGGCTGCAACTGGAGCTGTGCGCCATGGCCATCCTCCTGACCAAAGGTGAAATTAG
ATGCTACTGTGATGCTGCGCATTGTGTCGCCACAGGCTACATGTGCAAATCTGAGCTCAACGCTTGCTTCTCCAGACTGC
TTGACCCACAGAACAGCCATTCTCCACTTACTCATGGCTGCTTAGACTCTCTTGCAAGCACCTCAGACCTCTGTCAAGCC
AACCTGGCACAAAACCACTCTGGAATGACAATCCCCAAGTTGGAGTGTTGTCACGAAGACATGTGCAATTACAAAGGGTT
ATATGACGTCCTTTCTCCGTCCAGAGGAGAACTTTCAGGACAAGGCAGCAGATACCAGCACGATTCCAGCAGGAACCTCA
TCACGAAGGTCCAGGAGCTGACCTCCTCGAAAGAACTCTGGTTCAGGGCCGCCGTCATTGCGGTCCCCATTGCCGGTGGG
CTGATCTTGGTGCTCCTCATCATGCTGGCGCTGCGCATGCTCAGGAGCGAGAACAAGAGACTGCAGGACCAGAGGCAGCA
AATGCTCTCCCGACTGCACTACAGCTTCCACGGGCACCATTCCAAAAAGGGACAGGTGGCCAAGCTGGACTTGGAATGCA
TGGTGCCGGTGACGGGTCACGAAAACTGCTGCCTGACCTGCGACAAAATGCGACAGCCAGACCTCAGCAACGACAAAATA
CTTTCACTAGTCCACTGGGGGATGTACGGTGGGCATGGAAAGCTGGAGTTCGTG
ORF - retro_acar_183 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 93.41 % |
| Parental protein coverage: | 99.23 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | KYSNYNITLLRIELLFLSNLLYIGEIRCYCDAAHCVATGYMCKSELNACFSRLLDPQNSHSPLTHGCLDS |
| ..S......L..EL.....LL..GEIRCYCDAAHCVATGYMCKSELNACFSRLLDPQNSHSPLTHGCLDS | |
| Retrocopy | RHSSFLFVWLQLELCAMAILLTKGEIRCYCDAAHCVATGYMCKSELNACFSRLLDPQNSHSPLTHGCLDS |
| Parental | LASTSDLCQANLAQNHSGMTIPKLECCHEDMCNYKGLYDVLSPSRGELSGQGSRYQHDSSRNLITKVQEL |
| LASTSDLCQANLAQNHSGMTIPKLECCHEDMCNYKGLYDVLSPSRGELSGQGSRYQHDSSRNLITKVQEL | |
| Retrocopy | LASTSDLCQANLAQNHSGMTIPKLECCHEDMCNYKGLYDVLSPSRGELSGQGSRYQHDSSRNLITKVQEL |
| Parental | TSSKELWFRAAVIAVPIAGGLILVLLIMLALRMLRSENKRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLD |
| TSSKELWFRAAVIAVPIAGGLILVLLIMLALRMLRSENKRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLD | |
| Retrocopy | TSSKELWFRAAVIAVPIAGGLILVLLIMLALRMLRSENKRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLD |
| Parental | LECMVPVTGHENCCLTCDKMRQPDLSNDKILSLVHWGMYGGHGKLEFV |
| LECMVPVTGHENCCLTCDKMRQPDLSNDKILSLVHWGMYGGHGKLEFV | |
| Retrocopy | LECMVPVTGHENCCLTCDKMRQPDLSNDKILSLVHWGMYGGHGKLEFV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 3 .22 RPM | 6 .63 RPM |
| SRP009831_brain | 0 .90 RPM | 1 .94 RPM |
| SRP009831_dewlap | 38 .69 RPM | 33 .24 RPM |
| SRP009831_embryo | 7 .26 RPM | 28 .25 RPM |
| SRP009831_heart | 9 .75 RPM | 9 .44 RPM |
| SRP009831_liver | 5 .24 RPM | 7 .94 RPM |
| SRP009831_lung | 4 .43 RPM | 5 .84 RPM |
| SRP009831_ovary | 35 .87 RPM | 32 .32 RPM |
| SRP009831_skeletal_muscle | 0 .47 RPM | 0 .55 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_183 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_183 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000007580 | 1 retrocopy |
retro_acar_183 ,
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