RetrogeneDB ID: | retro_acar_150 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | AAWZ02039671:1800..2094(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PELP1 | ||
| Ensembl ID: | ENSACAG00000013787 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_acar_150
GGGGGCCACCTGGCGCTGGAGGCGCTGCTGCCGGGGTTGCTGCGGGGCGCTTCGGCGCTGCCTCCGCCAGGCCTGCCCAG
GCTGATCCGCTGCACCAGGGAATACAGGGCCGCGCACGCCCAGGCGTCGTCTTCCTTGGGCGGGTTCCTCAGCACCAGCA
ACGTCCGGCTGGGAAGCCTCAAGACCCATTTTGAGGGCCTGTGCCTCCTCTCGCTCCTGGTGACGGAGAACAGCACTGAA
ACCTTCAGCCAGAACTGCCTGCCGTGGCTCCGGAGCCTACAGCACCTCATCCAG
ORF - retro_acar_150 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 85.86 % |
| Parental protein coverage: | 61.11 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GGRLALEALLPGLLRGASPALPPPGLPGLIRCARECGAARAQASPSLGGLLSVSNARLGSIKTRFEGLCL |
| GG.LALEALLPGLLRGAS.ALPPPGLP.LIRC.RE..AA.AQAS.SLGG.LS.SN.RLGS.KT.FEGLCL | |
| Retrocopy | GGHLALEALLPGLLRGAS-ALPPPGLPRLIRCTREYRAAHAQASSSLGGFLSTSNVRLGSLKTHFEGLCL |
| Parental | LSLLVTESSTETFSQNCLPWLRSLQHLIQ |
| LSLLVTE.STETFSQNCLPWLRSLQHLIQ | |
| Retrocopy | LSLLVTENSTETFSQNCLPWLRSLQHLIQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .00 RPM | 1 .41 RPM |
| SRP009831_brain | 0 .00 RPM | 1 .04 RPM |
| SRP009831_dewlap | 0 .00 RPM | 4 .56 RPM |
| SRP009831_embryo | 0 .06 RPM | 8 .45 RPM |
| SRP009831_heart | 0 .00 RPM | 3 .32 RPM |
| SRP009831_liver | 0 .00 RPM | 0 .82 RPM |
| SRP009831_lung | 0 .00 RPM | 7 .05 RPM |
| SRP009831_ovary | 0 .04 RPM | 6 .52 RPM |
| SRP009831_skeletal_muscle | 0 .00 RPM | 1 .86 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_150 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_150 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000013787 | 1 retrocopy |
retro_acar_150 ,
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