Parental gene:

ENSSSCG00000011266

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:13:26391340..26393247(+)


>ENSSSCG00000011266
CGAGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCTATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCA
GATCCAGGCAGCCTTCCGGGAGCCAAGACTTCTGGTGGTTACTGATCCCAGGGCTGACCACCAGCCTCTCACAGAGGCCT
CTTATGTTAACCTGCCTACCATTGCTCTGTGTAACACAGACTCACCTCTGCGTTATGTGGACATTGCCATCCCGTGCAAC
AACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGATGCTCGCCCGGGAAGTTCTGCGCATGCGTGGCACCATCTCCCG
GGAACACCCATGGGAAGTCATGCCTGACCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAGGAAGAGCAGGCCGCAG
CTGAGAAGGCTGTAACCAAGGAGGAATTTCAGGGTGAATGGACTGCGCCAGCTCCTGAGTTCACTGCCACTCAACCTGAG
GTGGCAGATTGGTCCGAAGGTGTGCAGGTGCCTTCTGTGCCCATCCAGCAATTCCCTACTGAAGATTGGAGTGCTCAGCC
TACCACTGAAGATTGGTCTGCAGCTCCCACTGCGCAGGCCACTGAATGGGTAGGAACAACCACTGAGTGGTCTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 429 .65 RPM
SRP014902_testis 768 .76 RPM
SRP018288_heart 162 .09 RPM
SRP018288_kidney 373 .14 RPM
SRP018288_liver 344 .13 RPM
SRP018288_lung 243 .36 RPM
SRP018856_adipose 424 .78 RPM
SRP035408_brain 335 .42 RPM
SRP035408_liver 368 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008962 possible_ortholog 13 retrogenes
Bos taurus ENSBTAG00000009757 possible_ortholog 19 retrogenes
Canis familiaris ENSCAFG00000005101 possible_ortholog 27 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
Dipodomys ordii ENSDORG00000008267 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000013062 possible_ortholog 5 retrogenes
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000002739 possible_ortholog 22 retrogenes
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
Macropus eugenii ENSMEUG00000008169 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000004518 possible_ortholog 32 retrogenes
Monodelphis domestica ENSMODG00000010967 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000004505 possible_ortholog 16 retrogenes
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
Sorex araneus ENSSARG00000014402 ortholog_one2one 10 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 possible_ortholog 2 retrogenes
Tupaia belangeri ENSTBEG00000015946 possible_ortholog 54 retrogenes
Tursiops truncatus ENSTTRG00000014496 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_22 81.97 57.82
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2. retro_sscr_269 56.55 67.30
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3. retro_sscr_890 68.04 91.00
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4. retro_sscr_926 53.69 70.14
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5. retro_sscr_966 59.09 50.24
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6. retro_sscr_967 59.09 50.24
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7. retro_sscr_982 65.75 68.25
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8. retro_sscr_1022 73.58 100.00
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9. retro_sscr_1180 74.05 61.61
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Download FASTA sequences of all ENSSSCG00000011266 retrocopies