Parental gene:

PPP6C, ENSSSCG00000005600

Aliases:None
Description:protein phosphatase 6, catalytic subunit [Source:HGNC Symbol;Acc:9323]
Organism:Pig (Sus scrofa)
Coordinates:1:299702673..299727172(+)


>ENSSSCG00000005600
ATGGCGCCCCTGGACTTGGACAAGTATGTGGAGATAGCGCGTCTATGCAAGTACCTGCCCGAGAACGACCTGAAGCGGTT
GTGTGACTATGTTTGTGACCTCCTCTTGGAAGAGTCAAATGTCCAGCCAGTGTCGACACCTGTAACAGTGTGTGGAGACA
TACACGGACAGTTTTATGATCTTTGTGAACTATTCAGAACTGGAGGTCAGGTTCCTGACACAAACTACATATTTATGGGT
GATTTTGTAGACAGAGGTTATTATAGTTTGGAGACCTTCACTTACCTTCTTGCACTAAAGGCTAAATGGCCTGATCGTAT
TACACTTTTGCGAGGAAATCATGAGAGTAGACAGATAACACAGGTGTATGGATTTTATGATGAGTGCCAAACCAAATATG
GAAATGCTAATGCCTGGAGATACTGTACCAAAGTTTTTGACATGCTCACAGTAGCAGCTTTAATAGATGAGCAGATTTTG
TGTGTTCATGGTGGTTTATCTCCCGATATCAAAACACTGGATCAGATCCGTACTATTGAACGGAATCAAGAAATTCCTCA
TAAAGGAGCATTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTGGATACTTGGGCAATCAGTCCCCGAGGAGCAGGTT
GGCTTTTTGGCGCAAAGGTCACAAATGAGTTTGTTCATATCAACAACTTAAAACTCATCTGCAGAGCACACCAGCTAGTG
CATGAAGGCTATAAATTTATGTTTGATGAGAAGCTGGTAACAGTATGGTCTGCTCCTAATTACTGCTATCGTTGTGGCAA
TATTGCTTCGATCATGGTCTTCAAAGATGTAAATACAAGAGAACCAAAGTTATTCCGGGCAGTTCCAGATTCAGAACGTG
TTATTCCTCCCAGAACGACGACGCCGTATTTCCTTTGA

Library Parental gene expression (RPM)
SRP014902_placenta 13 .94 RPM
SRP014902_testis 11 .74 RPM
SRP018288_heart 25 .38 RPM
SRP018288_kidney 43 .24 RPM
SRP018288_liver 24 .47 RPM
SRP018288_lung 27 .59 RPM
SRP018856_adipose 31 .86 RPM
SRP035408_brain 23 .03 RPM
SRP035408_liver 12 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012357 ortholog_one2one 3 retrogenes
retro_chof_1759, retro_chof_183, retro_chof_608,
Dasypus novemcinctus ENSDNOG00000015319 ortholog_one2one 1 retrogene
retro_dnov_1700,
Erinaceus europaeus ENSEEUG00000010197 ortholog_one2one 1 retrogene
retro_eeur_706,
Macaca mulatta ENSMMUG00000020549 ortholog_one2one 1 retrogene
retro_mmul_698,
Rattus norvegicus ENSRNOG00000015145 ortholog_one2one 1 retrogene
retro_rnor_2074,
Sarcophilus harrisii ENSSHAG00000008282 ortholog_one2one 1 retrogene
retro_shar_146,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_243 98.36 100.00
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Download FASTA sequences of all ENSSSCG00000005600 retrocopies