Parental gene:

ATP5B, ENSSSCG00000000405

Aliases:None
Description:ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:F1SLA0]
Organism:Pig (Sus scrofa)
Coordinates:5:23659083..23666696(-)


>ENSSSCG00000000405
ATGTTGGGCTTTGTGGGTCGTGTGGCCTCTGCCTCGGCCTCTGGGGCCTTGCGGGGACTCAGCCCTTCAGCGCCGCTACC
CCAAGCCCAGCTCTTACTGCGGGCCGCTCCGGCAGCGCTCCAGCCTGCCAGAGACTATGCCACTCAACCATCTCCATCGC
CAAAGGCAGGCGCCGCCACTGGGCGAATCGTGGCAGTCATTGGTGCAGTGGTGGATGTCCAGTTTGATGAAGGACTGCCA
CCCATCCTAAATGCCCTGGAAGTGCAAGGCAGGGAGACCAGGCTGGTTTTGGAGGTGGCCCAGCATTTGGGTGAGAGTAC
TGTAAGGACCATTGCCATGGATGGTACAGAAGGCCTGGTTAGAGGCCAGAAAGTCCTAGATTCTGGTGCACCAATCAAAA
TTCCTGTTGGGCCTGAGACCTTGGGCAGAATCATGAATGTCATTGGAGAACCTATTGATGAGAGAGGTCCCATCAAAACC
AAACAATTTGCTGCTATTCATGCTGAGGCTCCTGAATTCATGGAGATGAGTGTTGAGCAGGAAATTCTGGTTACCGGTAT
CAAGGTTGTGGATCTACTGGCTCCCTATGCCAAGGGTGGCAAAATTGGGCTCTTTGGTGGTGCTGGAGTTGGCAAGACAG
TACTGATCATGGAGTTAATCAACAACGTAGCCAAAGCTCATGGTGGTTACTCCGTGTTTGCTGGTGTTGGCGAAAGGACC
CGTGAGGGCAATGACTTATACCATGAAATGATTGAGTCTGGTGTCATCAACTTAAAAGATGCTACCTCTAAGGTAGCGCT
GGTGTACGGTCAAATGAATGAACCTCCGGGTGCTCGGGCCCGGGTAGCTCTGACTGGACTGACTGTAGCTGAATACTTCA
GAGACCAAGAGGGTCAAGATGTACTGCTGTTTATTGATAACATCTTTCGCTTCACCCAGGCTGGCTCAGAAGTGTCTGCT
TTATTGGGCAGAATCCCTTCTGCGGTGGGTTATCAGCCTACCCTGGCCACTGACATGGGTACCATGCAGGAAAGAATCAC
CACCACCAAAAAGGGATCTATCACCTCTGTACAGGCCATCTATGTGCCAGCTGATGACTTGACTGACCCTGCTCCTGCCA
CCACCTTTGCGCATTTGGATGCTACCACTGTGCTGTCCCGTGCTATTGCTGAGCTGGGCATTTATCCCGCTGTGGATCCT
CTGGACTCTACTTCTCGAATCATGGATCCCAACATTGTTGGCAGTGAGCATTATGATGTTGCCCGTGGAGTGCAAAAGAT
CCTACAGGACTACAAATCCCTCCAAGATATCATTGCCATCCTGGGCATGGATGAACTTTCTGAGGAAGACAAGTTAACTG
TATCCCGTGCACGGAAAATACAGCGTTTCCTGTCTCAGCCATTCCAGGTTGCTGAGGTCTTTACAGGTCACTTGGGGAAG
TTGGTACCCCTGAAGGAGACCATCAAAGGATTCCAGCAGATTTTGGCAGGTGAATATGACCATCTCCCAGAACAGGCTTT
CTATATGGTGGGACCCATTGAAGAAGCTGTGGCAAAAGCTGATAAACTGGCTGAAGAGCACTCATGA

Library Parental gene expression (RPM)
SRP014902_placenta 326 .78 RPM
SRP014902_testis 408 .64 RPM
SRP018288_heart 2124 .72 RPM
SRP018288_kidney 1484 .87 RPM
SRP018288_liver 565 .92 RPM
SRP018288_lung 153 .35 RPM
SRP018856_adipose 609 .27 RPM
SRP035408_brain 403 .61 RPM
SRP035408_liver 412 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016752 ortholog_one2one 1 retrogene
retro_acar_181,
Bos taurus ENSBTAG00000013315 ortholog_one2one 1 retrogene
retro_btau_1264,
Choloepus hoffmanni ENSCHOG00000005350 ortholog_one2one 1 retrogene
retro_chof_1544,
Callithrix jacchus ENSCJAG00000033571 ortholog_one2one 2 retrogenes
retro_cjac_1488, retro_cjac_928,
Dasypus novemcinctus ENSDNOG00000011289 ortholog_one2one 1 retrogene
retro_dnov_361,
Echinops telfairi ENSETEG00000010208 ortholog_one2many 1 retrogene
retro_etel_2162,
Homo sapiens ENSG00000110955 ortholog_one2one 1 retrogene
retro_hsap_2128,
Gorilla gorilla ENSGGOG00000011596 ortholog_one2one 1 retrogene
retro_ggor_1648,
Macropus eugenii ENSMEUG00000002875 ortholog_one2one 6 retrogenes
retro_meug_1416, retro_meug_1608, retro_meug_411, retro_meug_430, retro_meug_685, retro_meug_908,
Microcebus murinus ENSMICG00000001084 ortholog_one2one 1 retrogene
retro_mmur_495,
Macaca mulatta ENSMMUG00000001027 ortholog_one2many 1 retrogene
retro_mmul_103,
Pongo abelii ENSPPYG00000004668 ortholog_one2one 2 retrogenes
retro_pabe_1921, retro_pabe_2032,
Pan troglodytes ENSPTRG00000005107 ortholog_one2one 1 retrogene
retro_ptro_1557,
Tarsius syrichta ENSTSYG00000009962 ortholog_one2one 1 retrogene
retro_tsyr_644,
Tursiops truncatus ENSTTRG00000002144 ortholog_one2one 1 retrogene
retro_ttru_371,
Vicugna pacos ENSVPAG00000004025 ortholog_one2one 2 retrogenes
retro_vpac_405, retro_vpac_562,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_453 86.43 79.55
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Download FASTA sequences of all ENSSSCG00000000405 retrocopies