Parental gene:

Ppp1cb, ENSRNOG00000004612

Aliases:None
Description:Serine/threonine-protein phosphatase PP1-beta catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P62142]
Organism:Rat (Rattus norvegicus)
Coordinates:6:33416540..33448276(-)


>ENSRNOG00000004612
ATGGCGGACGGGGAGCTGAACGTGGACAGCCTCATCACCCGCCTGCTGGAGGTACGAGGATGTCGTCCGGGAAAAATTGT
GCAGATGACTGAAGCAGAAGTCCGAGGACTGTGTATCAAGTCTCGTGAAATCTTTCTTAGCCAGCCTATTCTTTTGGAAT
TGGAAGCGCCACTGAAGATTTGTGGAGATATTCATGGACAGTATACAGACTTACTGAGATTATTTGAATATGGAGGTTTT
CCACCAGAAGCCAACTATCTTTTCTTAGGAGATTATGTGGACAGAGGAAAGCAGTCTTTGGAAACCATCTGTTTGCTATT
GGCTTACAAAATCAAATACCCAGAGAACTTCTTTCTTCTACGAGGAAACCATGAGTGTGCTAGCATCAACCGCATTTATG
GATTCTATGATGAGTGCAAACGAAGATTTAATATTAAATTGTGGAAGACATTCACTGATTGTTTTAATTGTCTGCCTATA
GCTGCTATTGTTGATGAGAAAATCTTCTGCTGTCATGGAGGACTGTCACCAGACCTACAGTCTATGGAACAGATTCGGAG
AATTATGAGACCCACTGACGTACCTGATACAGGTTTGCTTTGTGATTTACTGTGGTCCGACCCAGATAAGGATGTACAAG
GCTGGGGAGAAAATGATCGTGGTGTTTCTTTTACTTTTGGAGCTGATGTAGTCAGTAAATTTCTGAATCGTCATGATTTG
GACTTGATTTGTCGAGCCCATCAGGTGGTAGAAGATGGATATGAATTTTTTGCTAAACGACAATTGGTAACTTTATTTTC
TGCCCCAAATTACTGCGGCGAGTTTGACAATGCTGGTGGTATGATGAGTGTGGATGAAACTTTGATGTGTTCATTCCAGA
TATTGAAACCATCTGAAAAGAAAGCTAAGTACCAGTATGGTGGGCTGAATTCTGGACGTCCTGTCACTCCGCCTCGAACA
GCTAATCCACCGAAGAAAAGGTGA

Library Parental gene expression (RPM)
SRP017611_brain 262 .35 RPM
SRP017611_kidney 212 .56 RPM
SRP017611_liver 85 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000859 ortholog_one2one 5 retrogenes
retro_chof_2023, retro_chof_2063, retro_chof_2076, retro_chof_2154, retro_chof_539,
Echinops telfairi ENSETEG00000015038 ortholog_one2one 2 retrogenes
retro_etel_1223, retro_etel_1364,
Ictidomys tridecemlineatus ENSSTOG00000029081 possible_ortholog 2 retrogenes
retro_itri_1200, retro_itri_1618,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1455 87.01 100.00
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2. retro_rnor_2344 88.41 100.00
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Download FASTA sequences of all ENSRNOG00000004612 retrocopies