Parental gene:

RPL12, ENSPVAG00000000925

Aliases:None
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1686:125817..129173(-)


>ENSPVAG00000000925
ATGCCGCCTAAGTTCGACCCCAACGAAGTCAAAGTCGTGTACCTGAGGTGCACCGGTGGGGAAGTCGGTGCCACATCTGC
CCTGGCCCCCAAGATCGGGCCCTTGGGTCTGTCACCAAAAAAGGTTGGTGATGACATCGCCAAGGCAACCGGTGATTGGA
AGGGTCTGAGGATCACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTAGTACCTTCTGCCTCTGCCTTG
ATCATCAAAGCCCTCAAAGAACCACCAAGGGACAGAAAGAAGCAGAAAAACATTAAGCACAGTGGAAACATCACTTTCGA
TGAGATTGTCAACATTGCCCGACAGATGCGGCACCGATCTTTAGCTAGAGAACTCTCTGGAACCATTAAAGAGATCTTGG
GCACTGCCCAGTCTGTGGGCTGCAATGTTGATGGTCGCCATCCTCATGACATCATAGATGACATCAACAGTGGCGCAGTG
GAATGCCCAGCTAGTTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006963 ortholog_one2one 3 retrogenes
retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus ENSCJAG00000018082 possible_ortholog 1 retrogene
retro_cjac_221,
Gorilla gorilla ENSGGOG00000000648 ortholog_one2one 34 retrogenes
retro_ggor_1024, retro_ggor_1059, retro_ggor_1086, retro_ggor_1207, retro_ggor_1242, retro_ggor_1377, retro_ggor_1389, retro_ggor_1449, retro_ggor_1511, retro_ggor_1516, retro_ggor_1530, retro_ggor_1645, retro_ggor_1740, retro_ggor_1753, retro_ggor_1806, retro_ggor_1845, retro_ggor_2158, retro_ggor_221, retro_ggor_2232, retro_ggor_2293, retro_ggor_2304, retro_ggor_232, retro_ggor_2334, retro_ggor_2394, retro_ggor_2414, retro_ggor_2506, retro_ggor_262, retro_ggor_2758, retro_ggor_2768, retro_ggor_2949, retro_ggor_541, retro_ggor_600, retro_ggor_637, retro_ggor_942,
Latimeria chalumnae ENSLACG00000015373 ortholog_one2one 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta ENSMMUG00000000422 possible_ortholog 2 retrogenes
retro_mmul_1823, retro_mmul_53,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus ENSMUSG00000038900 ortholog_one2many 1 retrogene
retro_mmus_28,
Pongo abelii ENSPPYG00000019622 possible_ortholog 44 retrogenes
retro_pabe_1009, retro_pabe_1084, retro_pabe_1095, retro_pabe_1127, retro_pabe_1159, retro_pabe_1223, retro_pabe_1246, retro_pabe_1309, retro_pabe_1361, retro_pabe_1471, retro_pabe_1509, retro_pabe_1577, retro_pabe_1659, retro_pabe_1660, retro_pabe_1736, retro_pabe_1794, retro_pabe_1806, retro_pabe_1820, retro_pabe_1969, retro_pabe_1982, retro_pabe_2000, retro_pabe_2149, retro_pabe_2328, retro_pabe_2531, retro_pabe_2802, retro_pabe_2859, retro_pabe_2928, retro_pabe_2947, retro_pabe_3002, retro_pabe_3146, retro_pabe_3185, retro_pabe_3276, retro_pabe_3363, retro_pabe_3405, retro_pabe_3482, retro_pabe_3693, retro_pabe_488, retro_pabe_521, retro_pabe_604, retro_pabe_620, retro_pabe_757, retro_pabe_815, retro_pabe_831, retro_pabe_904,
Pan troglodytes ENSPTRG00000022808 ortholog_one2many 1 retrogene
retro_ptro_21,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sus scrofa ENSSSCG00000005612 ortholog_one2one 14 retrogenes
retro_sscr_1111, retro_sscr_127, retro_sscr_189, retro_sscr_28, retro_sscr_439, retro_sscr_526, retro_sscr_551, retro_sscr_71, retro_sscr_715, retro_sscr_772, retro_sscr_773, retro_sscr_828, retro_sscr_832, retro_sscr_911,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_100 59.60 59.39
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2. retro_pvam_209 57.03 75.15
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3. retro_pvam_239 60.00 75.15
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4. retro_pvam_483 66.92 77.58
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5. retro_pvam_572 58.47 69.70
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6. retro_pvam_590 75.48 92.12
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7. retro_pvam_617 75.44 67.88
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8. retro_pvam_630 78.05 98.18
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9. retro_pvam_687 69.34 81.82
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10. retro_pvam_747 69.89 56.36
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11. retro_pvam_787 55.81 51.52
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12. retro_pvam_846 72.89 100.00
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13. retro_pvam_888 73.00 60.61
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14. retro_pvam_1026 73.86 51.52
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15. retro_pvam_1193 83.76 70.30
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Download FASTA sequences of all ENSPVAG00000000925 retrocopies