Parental gene:

ENSPPYG00000019193

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:9:42823103..42999252(+)


>ENSPPYG00000019193
ATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTT
TTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTG
GTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTTTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGG
CATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCATTGTGGATGCAAATCTGAG
CGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGG
GCCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCAGTATGTTGTAAGAAAG
CCATTAAATAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTGCAGCA
CAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTACTAAGAAAAATAAGGAAGAGGCTGCAGAATATGCTAAACTTTTGG
CCAAGAGAATGAAGGAGGCTAAGGAGAAGCGCCAGGAACAAATTGCGAAGAGACGCAGACTTTCCTCTCTGCGAGCTTCT
ACTTCTAAGTCTGAATCCAGTCAGAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 186 .66 RPM
SRP007412_cerebellum 221 .44 RPM
SRP007412_heart 280 .38 RPM
SRP007412_kidney 563 .50 RPM
SRP007412_liver 437 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Canis familiaris ENSCAFG00000001615 ortholog_one2many 4 retrogenes
retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus ENSCJAG00000020612 possible_ortholog 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus ENSDNOG00000007241 ortholog_one2many 1 retrogene
retro_dnov_1192,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Microcebus murinus ENSMICG00000007262 ortholog_one2one 24 retrogenes
retro_mmur_1004, retro_mmur_1024, retro_mmur_1048, retro_mmur_1117, retro_mmur_1169, retro_mmur_1298, retro_mmur_1441, retro_mmur_1530, retro_mmur_189, retro_mmur_406, retro_mmur_414, retro_mmur_473, retro_mmur_517, retro_mmur_560, retro_mmur_723, retro_mmur_748, retro_mmur_760, retro_mmur_783, retro_mmur_794, retro_mmur_811, retro_mmur_856, retro_mmur_88, retro_mmur_907, retro_mmur_911,
Macaca mulatta ENSMMUG00000003412 possible_ortholog 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Mus musculus ENSMUSG00000028495 ortholog_one2one 45 retrogenes
retro_mmus_1010, retro_mmus_1126, retro_mmus_1291, retro_mmus_1357, retro_mmus_1436, retro_mmus_1590, retro_mmus_1663, retro_mmus_1701, retro_mmus_1720, retro_mmus_1966, retro_mmus_1969, retro_mmus_2047, retro_mmus_2068, retro_mmus_2146, retro_mmus_2167, retro_mmus_2171, retro_mmus_2336, retro_mmus_2342, retro_mmus_2367, retro_mmus_2369, retro_mmus_2489, retro_mmus_2546, retro_mmus_2593, retro_mmus_2601, retro_mmus_2625, retro_mmus_2824, retro_mmus_2845, retro_mmus_2946, retro_mmus_3154, retro_mmus_324, retro_mmus_3256, retro_mmus_3338, retro_mmus_3498, retro_mmus_3633, retro_mmus_475, retro_mmus_477, retro_mmus_478, retro_mmus_568, retro_mmus_588, retro_mmus_617, retro_mmus_716, retro_mmus_743, retro_mmus_748, retro_mmus_895, retro_mmus_938,
Ochotona princeps ENSOPRG00000000751 ortholog_one2one 6 retrogenes
retro_opri_1111, retro_opri_1187, retro_opri_248, retro_opri_33, retro_opri_466, retro_opri_865,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Rattus norvegicus ENSRNOG00000049025 possible_ortholog 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,
Vicugna pacos ENSVPAG00000006030 ortholog_one2one 10 retrogenes
retro_vpac_217, retro_vpac_228, retro_vpac_288, retro_vpac_297, retro_vpac_392, retro_vpac_407, retro_vpac_412, retro_vpac_438, retro_vpac_618, retro_vpac_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_629 73.91 100.00
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2. retro_pabe_730 78.88 98.80
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3. retro_pabe_822 81.82 53.01
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4. retro_pabe_850 84.13 50.20
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5. retro_pabe_955 66.23 58.23
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6. retro_pabe_1024 55.24 67.96
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7. retro_pabe_1625 85.71 53.01
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8. retro_pabe_2065 60.00 81.12
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9. retro_pabe_2616 65.58 85.54
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10. retro_pabe_2617 65.28 85.54
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11. retro_pabe_2882 65.62 63.05
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12. retro_pabe_2964 60.12 65.06
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13. retro_pabe_3282 83.19 92.77
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14. retro_pabe_3481 70.24 100.00
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15. retro_pabe_3777 84.21 53.41
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Download FASTA sequences of all ENSPPYG00000019193 retrocopies