Parental gene:

ENSOCUG00000000347

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:13:37518490..37522502(+)


>ENSOCUG00000000347
ATAAGTGCAGTGAGTAGGGAGAGGCGGAGAGGCGTGGGTACCCGGGGCGGCGGCGCGCCTGGGCGGTGGCTGAGGATGCG
CTCAGACGCACTGCTTCCTCCCTGCCGGGAGAGGGCGCTGCGCAGGCGCCGCGAGCAAGACGGAGGAAGAGGCGAGGCCG
CGCAGCGCTCGGACGCACGCGCACAGTTAACCGTGCCCGGTTCGGTTCCACTCTTTCTTGCCAGAGGCGCCGACTGGACC
CACGGGCGGGGCATGATGGTGGTGGGTACCGGCACCTCGCTGGCGCTCTCATCCCTCCTGTCCCTGCTGCTCTTCGCCGG
CATGCAGATGTACAGCCGCCAGCTGGCCTCCACCGAGTGGCTCACCATCCAGGGGGGCCTGCTTGGCTCCGGCCTCTTCG
TCTTCTCCCTCACTGCCTTCAATAATCTCGAGAATCTTGTCTTTGGCAAAGGATTCCAAGCCAAGGTCTTCCCTGAGATT
CTCCTGTGCCTCCTGTTGGCTCTCTTTGCATCAGGCCTCATCCACCGAGTCTGTGTTACCACCTGCTTTATCTTCTCCAT
GGTTGGTCTGTACTACATCAACAAGATCTCCTCCACGCTCTACCAGGCAACGGCTCCAGTCCTCACACCCGCCAAGGTCA
CAGGCAAGGGCAAGAAGAGGAACTAA

Library Parental gene expression (RPM)
SRP017611_brain 20 .70 RPM
SRP017611_kidney 43 .28 RPM
SRP017611_liver 15 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011336 ortholog_one2many 1 retrogene
retro_amel_1789,
Canis familiaris ENSCAFG00000017055 ortholog_one2many 1 retrogene
retro_cfam_1487,
Callithrix jacchus ENSCJAG00000009017 ortholog_one2many 1 retrogene
retro_cjac_1289,
Felis catus ENSFCAG00000025085 ortholog_one2many 3 retrogenes
retro_fcat_1496, retro_fcat_477, retro_fcat_576,
Homo sapiens ENSG00000163463 ortholog_one2many 1 retrogene
retro_hsap_2100,
Gorilla gorilla ENSGGOG00000009303 ortholog_one2many 1 retrogene
retro_ggor_1635,
Macaca mulatta ENSMMUG00000012180 ortholog_one2many 2 retrogenes
retro_mmul_745, retro_mmul_987,
Mustela putorius furo ENSMPUG00000005647 ortholog_one2many 1 retrogene
retro_mputfur_1653,
Nomascus leucogenys ENSNLEG00000011864 ortholog_one2many 1 retrogene
retro_nleu_1306,
Otolemur garnettii ENSOGAG00000030271 ortholog_one2many 1 retrogene
retro_ogar_1306,
Pongo abelii ENSPPYG00000000756 ortholog_one2many 1 retrogene
retro_pabe_1999,
Pan troglodytes ENSPTRG00000001410 ortholog_one2many 1 retrogene
retro_ptro_1541,
Rattus norvegicus ENSRNOG00000020542 ortholog_one2many 1 retrogene
retro_rnor_2128,
Ictidomys tridecemlineatus ENSSTOG00000008829 ortholog_many2many 1 retrogene
retro_itri_1127,
Tarsius syrichta ENSTSYG00000013228 ortholog_one2many 2 retrogenes
retro_tsyr_1096, retro_tsyr_531,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_157 95.42 59.28
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Download FASTA sequences of all ENSOCUG00000000347 retrocopies