Parental gene:

RPS3A, ENSG00000145425

Aliases:RPS3A, FTE1, MFTL, S3A
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Human (Homo sapiens)
Coordinates:4:152020724..152025804(+)


>ENSG00000145425
ATGGCGGTTGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
GAAAGATTGGTATGATGTGAAAGCACCTGCTATGTTCAATATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAG
GAACCAAAATTGCATCTGATGGTCTCAAGGGTCGTGTGTTTGAAGTGAGTCTTGCTGATTTGCAGAATGATGAAGTTGCA
TTTAGAAAATTCAAGCTGATTACTGAAGATGTTCAGGGTAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCG
TGACAAAATGTGTTCCATGGTCAAAAAATGGCAGACAATGATTGAAGCTCACGTTGATGTCAAGACTACCGATGGTTACT
TGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAG
GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAA
ATTGATTCCAGACAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCTCTCCATGATGTCTTCGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAGCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAA
GCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAA

Library Parental gene expression (RPM)
bodymap2_adipose 165 .82 RPM
bodymap2_adrenal 364 .03 RPM
bodymap2_brain 75 .31 RPM
bodymap2_breast 171 .42 RPM
bodymap2_colon 412 .69 RPM
bodymap2_heart 106 .78 RPM
bodymap2_kidney 159 .90 RPM
bodymap2_liver 109 .78 RPM
bodymap2_lung 488 .03 RPM
bodymap2_lymph_node 443 .21 RPM
bodymap2_ovary 526 .47 RPM
bodymap2_prostate 540 .27 RPM
bodymap2_skeletal_muscle 86 .34 RPM
bodymap2_testis 259 .98 RPM
bodymap2_thyroid 233 .87 RPM
bodymap2_white_blood_cells 665 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002268 possible_ortholog 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Gorilla gorilla ENSGGOG00000003182 possible_ortholog 2 retrogenes
retro_ggor_70, retro_ggor_97,
Myotis lucifugus ENSMLUG00000014788 ortholog_one2one 8 retrogenes
retro_mluc_1197, retro_mluc_1397, retro_mluc_1568, retro_mluc_1846, retro_mluc_2130, retro_mluc_2158, retro_mluc_2388, retro_mluc_862,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Nomascus leucogenys ENSNLEG00000005815 ortholog_one2one 26 retrogenes
retro_nleu_1160, retro_nleu_1177, retro_nleu_1402, retro_nleu_1472, retro_nleu_1483, retro_nleu_1487, retro_nleu_1816, retro_nleu_1878, retro_nleu_1992, retro_nleu_209, retro_nleu_2437, retro_nleu_2567, retro_nleu_2571, retro_nleu_2753, retro_nleu_281, retro_nleu_2979, retro_nleu_3087, retro_nleu_443, retro_nleu_526, retro_nleu_654, retro_nleu_658, retro_nleu_758, retro_nleu_767, retro_nleu_799, retro_nleu_942, retro_nleu_962,
Oryctolagus cuniculus ENSOCUG00000007011 ortholog_one2many 1 retrogene
retro_ocun_257,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
retro_shar_777, retro_shar_95,
Sus scrofa ENSSSCG00000009019 ortholog_one2one 3 retrogenes
retro_sscr_27, retro_sscr_749, retro_sscr_762,
Tupaia belangeri ENSTBEG00000002963 ortholog_one2one 98 retrogenes
retro_tbel_1005, retro_tbel_11, retro_tbel_1119, retro_tbel_116, retro_tbel_1232, retro_tbel_1318, retro_tbel_133, retro_tbel_137, retro_tbel_1375, retro_tbel_1378, retro_tbel_1383, retro_tbel_1417, retro_tbel_1421, retro_tbel_1509, retro_tbel_1686, retro_tbel_1698, retro_tbel_172, retro_tbel_1720, retro_tbel_1721, retro_tbel_1744, retro_tbel_1814, retro_tbel_1829, retro_tbel_1856, retro_tbel_1896, retro_tbel_1948, retro_tbel_1960, retro_tbel_1999, retro_tbel_206, retro_tbel_2200, retro_tbel_2306, retro_tbel_2463, retro_tbel_2483, retro_tbel_2510, retro_tbel_2626, retro_tbel_2654, retro_tbel_2657, retro_tbel_2745, retro_tbel_2759, retro_tbel_2760, retro_tbel_2764, retro_tbel_281, retro_tbel_2857, retro_tbel_2957, retro_tbel_2959, retro_tbel_3114, retro_tbel_317, retro_tbel_3212, retro_tbel_3255, retro_tbel_3259, retro_tbel_3299, retro_tbel_336, retro_tbel_3372, retro_tbel_3416, retro_tbel_3471, retro_tbel_3486, retro_tbel_3513, retro_tbel_3558, retro_tbel_3613, retro_tbel_3631, retro_tbel_3655, retro_tbel_3705, retro_tbel_373, retro_tbel_375, retro_tbel_3755, retro_tbel_3786, retro_tbel_3815, retro_tbel_3823, retro_tbel_3832, retro_tbel_386, retro_tbel_3882, retro_tbel_39, retro_tbel_3947, retro_tbel_3966, retro_tbel_399, retro_tbel_4116, retro_tbel_4144, retro_tbel_4147, retro_tbel_4211, retro_tbel_4220, retro_tbel_423, retro_tbel_4294, retro_tbel_4304, retro_tbel_4347, retro_tbel_438, retro_tbel_4428, retro_tbel_445, retro_tbel_4579, retro_tbel_598, retro_tbel_619, retro_tbel_623, retro_tbel_671, retro_tbel_859, retro_tbel_90, retro_tbel_912, retro_tbel_92, retro_tbel_928, retro_tbel_956, retro_tbel_973,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_144 79.14 67.80
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2. retro_hsap_274 64.16 74.01
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3. retro_hsap_313 85.77 97.73
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4. retro_hsap_588 79.89 71.21
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5. retro_hsap_602 95.03 78.54
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6. retro_hsap_613 90.48 74.01
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7. retro_hsap_683 77.57 52.20
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8. retro_hsap_789 80.86 78.41
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9. retro_hsap_838 83.01 77.27
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10. retro_hsap_888 83.50 77.27
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11. retro_hsap_914 68.12 77.07
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12. retro_hsap_1080 79.82 81.06
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13. retro_hsap_1178 87.06 74.01
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14. retro_hsap_1320 80.13 75.12
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15. retro_hsap_1507 99.24 100.00
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16. retro_hsap_1559 94.32 100.00
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17. retro_hsap_1620 82.52 77.27
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18. retro_hsap_1891 94.64 63.64
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19. retro_hsap_1994 76.07 87.88
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20. retro_hsap_2575 84.86 82.20
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21. retro_hsap_2578 78.78 92.05
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22. retro_hsap_2607 82.04 77.27
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23. retro_hsap_2700 82.52 77.27
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24. retro_hsap_2803 85.44 77.27
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25. retro_hsap_2908 84.47 77.27
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26. retro_hsap_2909 81.64 77.27
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27. retro_hsap_3020 83.01 77.27
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28. retro_hsap_3112 84.84 92.05
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29. retro_hsap_3213 79.63 94.71
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30. retro_hsap_3366 95.08 89.27
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31. retro_hsap_3675 53.70 78.41
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32. retro_hsap_3876 90.60 100.00
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33. retro_hsap_3878 84.47 77.27
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34. retro_hsap_3879 98.81 74.01
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35. retro_hsap_3910 77.42 92.42
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36. retro_hsap_3929 83.01 77.27
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37. retro_hsap_3931 83.01 77.27
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38. retro_hsap_4017 82.52 77.27
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39. retro_hsap_4020 82.52 77.27
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40. retro_hsap_4021 83.01 77.27
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Download FASTA sequences of all ENSG00000145425 retrocopies