Parental gene:

SSU72, ENSEEUG00000010799

Aliases:None
Description:SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_5756:2..54317(-)


>ENSEEUG00000010799
ATGCCGTCGTCGCCGCTGAGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCATAACATCCTCAG
CAAACGAGGATTCAGCGTCCGGTCATTTGGAACAGGAACTCATGTGAAGCTTCCAGGGCCGGCGCCCGACAAGCCAAATG
TTTATGATTTCAAAACCACCTATGATCAGATGTACAACGATCTCCTTAGGAAAGACAAAGAACTCTACACCCAGAATGGC
ATTTTACACATGCTGGACAGAAATAAAAGAATCAAGCCCCGGCCAGAAAGGTTCCAGAATTGCAGAGACCTGTTCGACCT
GATCCTCACCTGTGAGGAGAGAGTATATGACCAGGTGGTAGAAGACCTCAATTCCAGAGAGCAGGAGACCTGCCAGCCAG
TGCATGTGATCAATGTGGACATCCAGGACAACCACGAGGAGGCC

Library Parental gene expression (RPM)
SRP017611_brain 19 .98 RPM
SRP017611_kidney 18 .75 RPM
SRP017611_liver 12 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013736 possible_ortholog 3 retrogenes
retro_amel_1930, retro_amel_292, retro_amel_84,
Felis catus ENSFCAG00000003318 ortholog_one2one 1 retrogene
retro_fcat_54,
Microcebus murinus ENSMICG00000011016 ortholog_one2one 5 retrogenes
retro_mmur_1057, retro_mmur_1081, retro_mmur_1353, retro_mmur_890, retro_mmur_891,
Mustela putorius furo ENSMPUG00000014394 possible_ortholog 2 retrogenes
retro_mputfur_108, retro_mputfur_1408,
Sarcophilus harrisii ENSSHAG00000009747 ortholog_one2one 1 retrogene
retro_shar_32,
Tupaia belangeri ENSTBEG00000010136 ortholog_one2one 3 retrogenes
retro_tbel_1675, retro_tbel_2435, retro_tbel_2704,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_648 81.55 66.89
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Download FASTA sequences of all ENSEEUG00000010799 retrocopies