Parental gene: | YBX1, ENSECAG00000023592 |
| Aliases: | None |
| Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 2:15726002..15744468(-) |
>ENSECAG00000023592
GCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAATGTAAGAAACGGATATGGTTTCATCAACAGGAATGACACCAAGGA
AGATGTATTTGTACACCAGACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTG
TGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGCCCTGGTGGAGTTCCAGTGCAAGGC
AGTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGCAGGGGTCCTCCACGCAATTACCAGCAGAATTA
CCAGAATAGTGAGAGTGGGGAAAAGAATGAGGGATCGGAGAGCGCTCCCGAAGGCCAGGCTCAACAGCGCCGGCCCTACC
GCAGGCGACGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAAGGA
GAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATATGTATCGGGGTTATAG
ACCACGATTCCGCAGGGGCCCTCCTCGCCAAAGACAGCCTAGAGAGGATGGCAATGAAGAAGATAAGGAAAATCAAGGAG
ATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGACGCAGACGCCCAGAAAACCCT
AAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGG
GGCTGAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_articular_cartilage | 10 .92 RPM |
| SRP021940_cerebellum | 7 .69 RPM |
| SRP021940_embryo | 26 .72 RPM |
| SRP021940_placental_villous | 9 .77 RPM |
| SRP021940_synovial_membrane | 16 .99 RPM |
| SRP021940_testis | 67 .59 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Loxodonta africana | ENSLAFG00000007597 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013136 | possible_ortholog | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000028047 | possible_ortholog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000006784 | possible_ortholog | 25 retrogenes |
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
|
| Sorex araneus | ENSSARG00000007896 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_194 | 67.86 | 82.53 | Please wait, loading  |
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| 2. | retro_ecab_228 | 82.29 | 71.00 | Please wait, loading |
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| 3. | retro_ecab_324 | 98.52 | 100.00 | Please wait, loading |
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| 4. | retro_ecab_389 | 87.41 | 99.63 | Please wait, loading |
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| 5. | retro_ecab_461 | 84.87 | 100.00 | Please wait, loading |
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| 6. | retro_ecab_538 | 50.71 | 50.56 | Please wait, loading |
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| 7. | retro_ecab_539 | 92.14 | 51.67 | Please wait, loading |
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| 8. | retro_ecab_712 | 95.17 | 100.00 | Please wait, loading |
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| 9. | retro_ecab_736 | 63.83 | 51.30 | Please wait, loading |
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| 10. | retro_ecab_756 | 71.00 | 83.64 | Please wait, loading |
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| 11. | retro_ecab_950 | 73.74 | 65.80 | Please wait, loading |
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| 12. | retro_ecab_963 | 56.69 | 56.88 | Please wait, loading |
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| 13. | retro_ecab_964 | 58.41 | 76.21 | Please wait, loading |
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| 14. | retro_ecab_965 | 55.56 | 89.96 | Please wait, loading |
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| 15. | retro_ecab_966 | 56.47 | 82.16 | Please wait, loading |
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| 16. | retro_ecab_982 | 56.56 | 78.44 | Please wait, loading |
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| 17. | retro_ecab_983 | 54.62 | 86.62 | Please wait, loading |
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| 18. | retro_ecab_984 | 55.45 | 71.38 | Please wait, loading |
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| 19. | retro_ecab_985 | 64.00 | 54.28 | Please wait, loading |
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| 20. | retro_ecab_992 | 92.19 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSECAG00000023592 retrocopies