Parental gene: | LAMP1, ENSECAG00000017618 |
| Aliases: | None |
| Description: | lysosomal-associated membrane protein 1 [Source:HGNC Symbol;Acc:6499] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 17:80033312..80052232(+) |
>ENSECAG00000017618
CTGTCTTTCCTGGAGTTAGCAGGCCTCATGCACGGTGCATCAGCAGTGTTTGTGGTGAAAGATGGCAACGGGACAGCTTG
TATAATGGCCAACTTCTCCGCTGCCTTCTTGACCAACTATGATACCAACAGTGGTTTTAAGAATGTGACCTTCGACCTGC
CCTCTGATGCAGTGGTATTAAACAGCAGCTCTTGTGGCAAAGACAATGCTTCTGGCCCCAGTCTCGTGGTTGCTTTTGGA
AGAGGACATACACTGACCCTCACCTTTGCAAGAAATGCCACACGTTACAGGGTCCAGCTGATGCGTTTTGTTTACAACTT
GTCAGATGCACAGATTTTCCCCAACGCAAGCTCCAAGGAAGTCAAGACTGTGGAATCCGTAACTGACATCAAGGCAGACA
TAAATAAAACATACAGGTGTGTAAGCAGCGATCAGATCCACATGAGTAACGTGACTGTCACGCTACATGATGCCACCATC
CAGGCGTACCTCTCCAGCAACAGCTTCAGTAAGGAAGAGACACGCTGTGAGCAAGATAGACCTTCCCCGACACCAACGCC
GCCAGTGACCCCCCACCCTTCACCATCCCCTACGCCTGAGAGCCCCTCAGTGAACAAGTACAACGTGAGTGGCACCAACG
GGACCTGTCTGCTGGCCACCATGGGGCTGCAGCTGAACGTCACTTACGAGAACAGGGACAACATGACTGTGACAAGAGTA
TTCAATATCAACCCAAATAAGACCCGTGTCAATGGGAGCTGCACTGCCCAACTGGTGACCCTGGAGCTCCGGGACGAGGA
TGTCACTCTCCTTGTCTTCCACTTTGGAATGAATGCAACTTCTAGCCAGTTTTTCCTGCAAGAAATCCAGTTGGATATGA
CTCTTCCTGACGCCAGAGACCCCACCTTCAAGGCTGCCAACAGCTCGCTGAGGGCACTTCAGGCCACCATCGGGAACTCC
TACAGGTGTAATGCCGAGGAGCGCCTGCGCGTCACAGAGGCCCTTTCTGTCAACGTCTTCAGAGTGTGGGTTCAGGCTTT
CCAGGTGGAAGGTGACAAGTTTGGGTCCGTGGAGGAATGCCAGCTGGATGAGAACAACATGATGATCCCCATCGCCGTGG
GCGGTGCCCTGGCCGGGCTGGTCCTCATCGTCCTCATTGCCTACCTCATCGGCAGGAAGAGGAGCCACGCGGGCTACCAG
ACAATTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_articular_cartilage | 451 .58 RPM |
| SRP021940_cerebellum | 256 .96 RPM |
| SRP021940_embryo | 195 .48 RPM |
| SRP021940_placental_villous | 735 .38 RPM |
| SRP021940_synovial_membrane | 465 .45 RPM |
| SRP021940_testis | 1072 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000009899 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004460 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_1056 | 55.85 | 100.00 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSECAG00000017618 retrocopies