Parental gene:

RPL12, ENSDNOG00000008412

Aliases:None
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3318:258988..262415(-)


>ENSDNOG00000008412
ATGCCGCCCAAGTTCGACCCCAACGAGATCAAAGTCGTGTACCTGAGGTGCACCGGTGGGGAAGTCGGTGCCACATCTGC
CCTGGCCCCCAAGATCGGCCCCCTCGGTCTGTCTCCAAAAAAGGTTGGTGATGACATTGCCAAGGCAACTGGTGACTGGA
AAGGTCTAAGGATTACAGTGAAACTGACCATCCAGAACAGACAGGCCCAGATCGAGGTGGTACCTTCTGCCTCTGCCCTG
ATCATCAAAGCCCTTAAGGAACCACCAAGAGACAGGAAGAAGCAGAAAAACATTAAGCACAGTGGAAATATCACTTTTGA
TGAGATCGTCAGCATTGCTCGACAGATGCGGCACCGATCTTTAGCCAGAGAACTCTCTGGAACCATTAAAGAGATTCTGG
GGACTGCCCAGTCTGTGGGCTGCAATGTGGATGGCCGCCACCCTCATGACATCATAGATGACATCAACAGTGGTGCAGTG
GAATGCCCAGCTAGTTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 1076 .57 RPM
SRP012922_cerebellum 317 .55 RPM
SRP012922_heart 351 .06 RPM
SRP012922_kidney 857 .53 RPM
SRP012922_liver 424 .48 RPM
SRP012922_lung 1040 .36 RPM
SRP012922_quadricep_muscle 624 .14 RPM
SRP012922_spleen 1918 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Latimeria chalumnae ENSLACG00000015373 ortholog_one2one 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Loxodonta africana ENSLAFG00000017669 possible_ortholog 10 retrogenes
retro_lafr_1, retro_lafr_193, retro_lafr_204, retro_lafr_286, retro_lafr_342, retro_lafr_41, retro_lafr_8, retro_lafr_802, retro_lafr_830, retro_lafr_984,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Procavia capensis ENSPCAG00000007469 ortholog_one2one 3 retrogenes
retro_pcap_135, retro_pcap_253, retro_pcap_306,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Tursiops truncatus ENSTTRG00000015700 ortholog_one2one 15 retrogenes
retro_ttru_1215, retro_ttru_1328, retro_ttru_1356, retro_ttru_1373, retro_ttru_1390, retro_ttru_1449, retro_ttru_1685, retro_ttru_1847, retro_ttru_187, retro_ttru_1942, retro_ttru_342, retro_ttru_421, retro_ttru_536, retro_ttru_65, retro_ttru_774,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_210 73.91 55.15
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2. retro_dnov_231 50.86 69.09
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3. retro_dnov_260 60.47 76.36
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4. retro_dnov_330 76.97 100.00
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5. retro_dnov_343 88.03 70.30
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6. retro_dnov_368 74.10 98.79
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7. retro_dnov_387 83.67 87.88
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8. retro_dnov_395 67.15 81.21
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9. retro_dnov_455 84.31 61.21
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10. retro_dnov_552 78.76 67.27
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11. retro_dnov_560 75.86 51.52
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12. retro_dnov_590 79.78 52.73
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13. retro_dnov_597 52.56 89.09
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14. retro_dnov_614 68.80 73.94
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15. retro_dnov_634 63.95 51.52
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16. retro_dnov_654 68.54 52.12
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17. retro_dnov_677 64.04 53.94
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18. retro_dnov_1021 68.29 72.73
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19. retro_dnov_1039 73.95 70.30
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20. retro_dnov_1105 72.67 96.97
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21. retro_dnov_1111 78.63 78.79
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22. retro_dnov_1291 77.50 71.52
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23. retro_dnov_1292 61.87 81.82
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24. retro_dnov_1339 53.21 89.09
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25. retro_dnov_1355 78.33 71.52
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26. retro_dnov_1383 87.64 53.33
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27. retro_dnov_1387 81.61 52.12
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28. retro_dnov_1408 72.05 96.97
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29. retro_dnov_1636 79.78 52.73
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30. retro_dnov_1658 73.58 64.24
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31. retro_dnov_1695 63.25 68.48
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32. retro_dnov_1711 83.45 86.67
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33. retro_dnov_1884 63.57 82.42
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34. retro_dnov_2053 96.97 100.00
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35. retro_dnov_2055 67.42 53.33
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36. retro_dnov_2058 75.73 61.82
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37. retro_dnov_2165 88.82 91.52
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38. retro_dnov_2196 88.48 100.00
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39. retro_dnov_2199 69.77 50.91
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40. retro_dnov_2222 69.30 67.27
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41. retro_dnov_2370 52.07 71.52
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42. retro_dnov_2430 69.13 90.30
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43. retro_dnov_2452 74.77 63.03
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44. retro_dnov_2485 92.12 100.00
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45. retro_dnov_2490 66.38 69.70
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46. retro_dnov_2603 77.05 72.73
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47. retro_dnov_2637 67.77 72.12
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48. retro_dnov_2639 65.59 53.94
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Download FASTA sequences of all ENSDNOG00000008412 retrocopies