Parental gene:

MRPL47, ENSCPOG00000002312

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_47:10520992..10533007(-)


>ENSCPOG00000002312
ATGGCTGCAGCCAGTGTGGCTACTTTTTGTAGAAGAATCTCAGCAGTCCTGAAGGCTTCCGGGTCATTAATAACTCCTGA
GGCTCCCACTAGGTCAGGTTCACAGGTTTCTCTTAACTTGTTTTCTAAGAATGCACCAGATGTCACATCCTTTCACCAGT
GTAAATTACTTCATACCACATTGTCAAGAAAAGGACTGGAGGAATTTTTTGATGATCCAAAGAATTGGGGGCAAGAAAAA
GTGAAATCTGGAGCTGCATGGACCTGTCAGCAGTTAAGGAACAAAAGTAATGAAGATTTACATAAACTTTGGTACGTCTT
ACTGAAAGAAAGAAACATGCTTCTAACTCTAGAACAGGAGGCCAAGCGGCAGAGTTTACCAATGCCCAGTCCAGAACGGC
TGGAAAAGGTAGTTGAGTCCATGGATGCATTAGATAAAGTGGTCCAGGAACGAGAAGATGCTTTAAGGCTTTTACAGACT
GGTCAAGAAAGAGCTAGACCTGGTGCTTGGAGAAGAGACATCTTCGGGAGAATCATTTGGCACAAGTTCAAGCAGTGGCC
TATACCTTGGTACCTAAATAAAAGATACAACAGGAAACGATTCTTTGCAATGCCTTATGTGGACCATTTTGTCAGACTGA
GACTTGAGAAACAAGCCCGCATTAAAGCAAGAAAAGCCAGTTTGGAGAAAAAGAAAGAGAAAGCTTTACAAGAAAAGTTT
CCACATCTTGCTGAAGCCCAGAAGTCGAGTCTTGTC

Library Parental gene expression (RPM)
SRP017611_brain 6 .33 RPM
SRP017611_kidney 8 .58 RPM
SRP017611_liver 8 .57 RPM
SRP040447_lung 8 .10 RPM
SRP040447_skeletal_muscle 6 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000011380 ortholog_one2one 1 retrogene
retro_cfam_1085,
Felis catus ENSFCAG00000031548 ortholog_one2one 1 retrogene
retro_fcat_235,
Macropus eugenii ENSMEUG00000012649 ortholog_one2one 2 retrogenes
retro_meug_1039, retro_meug_146,
Monodelphis domestica ENSMODG00000021301 ortholog_one2one 3 retrogenes
retro_mdom_1361, retro_mdom_1879, retro_mdom_562,
Mustela putorius furo ENSMPUG00000017214 ortholog_one2one 1 retrogene
retro_mputfur_495,
Mus musculus ENSMUSG00000037531 ortholog_one2one 3 retrogenes
retro_mmus_1976, retro_mmus_1986, retro_mmus_2753,
Otolemur garnettii ENSOGAG00000016957 ortholog_one2one 2 retrogenes
retro_ogar_1900, retro_ogar_3015,
Pteropus vampyrus ENSPVAG00000004284 ortholog_one2one 1 retrogene
retro_pvam_150,
Rattus norvegicus ENSRNOG00000011639 ortholog_one2one 2 retrogenes
retro_rnor_1829, retro_rnor_2523,
Sorex araneus ENSSARG00000006898 ortholog_one2one 2 retrogenes
retro_sara_269, retro_sara_721,
Tursiops truncatus ENSTTRG00000008909 ortholog_one2one 1 retrogene
retro_ttru_420,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_885 87.40 100.00
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2. retro_cpor_1219 68.64 85.71
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Download FASTA sequences of all ENSCPOG00000002312 retrocopies