Parental gene:

HIGD1A, ENSCPOG00000000703

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_7:45025115..45028806(-)


>ENSCPOG00000000703
ATGTCAAGCAACACAGATGTTTCTCTTTCTTCATATGATGAAGATCAGGGATCTAAACTTATCCGGAAAGCTAAAGAGGC
GCCATTTGTCCCTATTGGCATGGCGGGCTTCGCAGCAATCGTGGCATACGGGTTATACCGGCTGAAGAGCCGGGGAGACA
CAAAGATGTCCGTGCACCTGATCCACATGCGCGTGGCGGCTCAGGGCTTTGTCGTGGGAGCGATGACCCTGGGTATGGGC
TATTCCCTGTATCGGGAGTTCTGGGCAAAGCCTAAACCTTAG

Library Parental gene expression (RPM)
SRP017611_brain 20 .48 RPM
SRP017611_kidney 26 .59 RPM
SRP017611_liver 18 .59 RPM
SRP040447_lung 20 .56 RPM
SRP040447_skeletal_muscle 31 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012431 ortholog_one2one 1 retrogene
retro_amel_679,
Choloepus hoffmanni ENSCHOG00000009079 ortholog_one2one 10 retrogenes
retro_chof_1067, retro_chof_1609, retro_chof_171, retro_chof_180, retro_chof_1978, retro_chof_2028, retro_chof_2253, retro_chof_495, retro_chof_546, retro_chof_81,
Callithrix jacchus ENSCJAG00000032668 ortholog_one2many 9 retrogenes
retro_cjac_1056, retro_cjac_1703, retro_cjac_3001, retro_cjac_3044, retro_cjac_3211, retro_cjac_4111, retro_cjac_514, retro_cjac_79, retro_cjac_920,
Equus caballus ENSECAG00000010978 ortholog_one2one 1 retrogene
retro_ecab_755,
Echinops telfairi ENSETEG00000007493 ortholog_one2one 4 retrogenes
retro_etel_1278, retro_etel_1741, retro_etel_1957, retro_etel_767,
Felis catus ENSFCAG00000000537 ortholog_one2one 2 retrogenes
retro_fcat_1479, retro_fcat_414,
Homo sapiens ENSG00000181061 ortholog_one2one 13 retrogenes
retro_hsap_1003, retro_hsap_1221, retro_hsap_1313, retro_hsap_205, retro_hsap_2391, retro_hsap_2411, retro_hsap_2969, retro_hsap_3269, retro_hsap_391, retro_hsap_3975, retro_hsap_4079, retro_hsap_884, retro_hsap_996,
Gorilla gorilla ENSGGOG00000016759 ortholog_one2many 3 retrogenes
retro_ggor_1025, retro_ggor_148, retro_ggor_951,
Macaca mulatta ENSMMUG00000018783 ortholog_one2one 11 retrogenes
retro_mmul_1093, retro_mmul_1296, retro_mmul_2057, retro_mmul_2164, retro_mmul_2298, retro_mmul_495, retro_mmul_568, retro_mmul_603, retro_mmul_792, retro_mmul_804, retro_mmul_966,
Monodelphis domestica ENSMODG00000013605 ortholog_one2many 6 retrogenes
retro_mdom_1618, retro_mdom_176, retro_mdom_1937, retro_mdom_1988, retro_mdom_948, retro_mdom_970,
Mustela putorius furo ENSMPUG00000011870 ortholog_one2one 3 retrogenes
retro_mputfur_1112, retro_mputfur_1287, retro_mputfur_892,
Mus musculus ENSMUSG00000038412 ortholog_one2many 1 retrogene
retro_mmus_249,
Otolemur garnettii ENSOGAG00000011358 ortholog_one2one 3 retrogenes
retro_ogar_1546, retro_ogar_2641, retro_ogar_2844,
Ochotona princeps ENSOPRG00000016072 ortholog_one2one 1 retrogene
retro_opri_564,
Pongo abelii ENSPPYG00000013974 ortholog_one2one 16 retrogenes
retro_pabe_1014, retro_pabe_1096, retro_pabe_1776, retro_pabe_2159, retro_pabe_2196, retro_pabe_2462, retro_pabe_2707, retro_pabe_3136, retro_pabe_3199, retro_pabe_322, retro_pabe_3269, retro_pabe_3348, retro_pabe_398, retro_pabe_434, retro_pabe_672, retro_pabe_841,
Pan troglodytes ENSPTRG00000014802 ortholog_one2many 1 retrogene
retro_ptro_89,
Rattus norvegicus ENSRNOG00000019428 ortholog_one2many 1 retrogene
retro_rnor_36,
Sus scrofa ENSSSCG00000011290 ortholog_one2one 1 retrogene
retro_sscr_1026,
Ictidomys tridecemlineatus ENSSTOG00000009681 ortholog_one2one 3 retrogenes
retro_itri_1636, retro_itri_775, retro_itri_879,
Tupaia belangeri ENSTBEG00000002324 ortholog_one2one 5 retrogenes
retro_tbel_1136, retro_tbel_1451, retro_tbel_1608, retro_tbel_1991, retro_tbel_4525,
Tursiops truncatus ENSTTRG00000009760 ortholog_one2one 8 retrogenes
retro_ttru_1001, retro_ttru_1090, retro_ttru_120, retro_ttru_1292, retro_ttru_330, retro_ttru_362, retro_ttru_632, retro_ttru_79,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_314 73.12 98.92
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2. retro_cpor_347 73.68 98.92
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3. retro_cpor_420 52.69 98.92
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4. retro_cpor_800 57.45 97.85
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5. retro_cpor_973 62.77 100.00
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6. retro_cpor_974 63.83 100.00
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7. retro_cpor_975 65.59 100.00
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8. retro_cpor_976 65.59 100.00
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9. retro_cpor_977 65.59 100.00
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10. retro_cpor_1263 63.04 98.92
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11. retro_cpor_1517 73.12 98.92
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Download FASTA sequences of all ENSCPOG00000000703 retrocopies