Parental gene:

RPL10A, ENSAMEG00000000670

Aliases:None
Description:ribosomal protein L10a [Source:HGNC Symbol;Acc:10299]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192386.1:1306866..1308893(-)


>ENSAMEG00000000670
CGCAGCAGCAAAGTCTCCCGCGACACGCTGTACGAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCGCCGGAA
GTTCTTGGAGACGGTGGAGCTGCAGATCAGCCTGAAGAACTATGACCCTCAGAAGGACAAACGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACTCCCCGCCCCAAGTTCTCCGTATGTGTTTTGGGGGACCAGCAGCACTGTGATGAGGCCAAGGCAGTG
GATATTCCCCACATGGACATTGAGGCGCTGAAGAAACTCAACAAGAATAAAAAATTAGTCAAGAAGCTGGCCAAGAAGTA
CGATGCCTTTTTGGCTTCAGAATCTCTGATCAAGCAGATCCCACGAATTCTTGGCCCAGGGCTGAATAAGGCTGGCAAGT
TCCCTTCCTTGCTGACTCACAATGAGAACATGGTGGCCAAAGTGGACGAAGTGAAGTCCACCATCAAATTCCAGATGAAG
AAGGTGCTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACAGATGATGAGCTTGTATACAATATCCACTTAGCTGT
CAATTTCCTGGTGTCCTTGCTCAAGAAGAATTGGCAGAATGTCCGGGCCTTATACATCAAGAGCACCATGGGCAAGCCCC
AGCGCCTGTACTAA

Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000013325 ortholog_one2many 2 retrogenes
retro_etel_1974, retro_etel_326,
Felis catus ENSFCAG00000012904 ortholog_one2one 7 retrogenes
retro_fcat_1144, retro_fcat_1488, retro_fcat_1561, retro_fcat_1971, retro_fcat_210, retro_fcat_262, retro_fcat_560,
Homo sapiens ENSG00000198755 ortholog_one2one 13 retrogenes
retro_hsap_142, retro_hsap_1462, retro_hsap_1710, retro_hsap_177, retro_hsap_1935, retro_hsap_2795, retro_hsap_3025, retro_hsap_3245, retro_hsap_3353, retro_hsap_337, retro_hsap_3949, retro_hsap_4025, retro_hsap_4040,
Gorilla gorilla ENSGGOG00000028140 possible_ortholog 10 retrogenes
retro_ggor_1, retro_ggor_1124, retro_ggor_1282, retro_ggor_1407, retro_ggor_2088, retro_ggor_2273, retro_ggor_234, retro_ggor_2702, retro_ggor_358, retro_ggor_57,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Macaca mulatta ENSMMUG00000015907 ortholog_one2one 6 retrogenes
retro_mmul_1931, retro_mmul_2041, retro_mmul_2321, retro_mmul_2330, retro_mmul_306, retro_mmul_583,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Nomascus leucogenys ENSNLEG00000008650 ortholog_one2one 13 retrogenes
retro_nleu_1174, retro_nleu_1210, retro_nleu_1697, retro_nleu_1778, retro_nleu_1980, retro_nleu_2055, retro_nleu_2342, retro_nleu_2436, retro_nleu_2879, retro_nleu_662, retro_nleu_838, retro_nleu_986, retro_nleu_989,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Oryctolagus cuniculus ENSOCUG00000004065 possible_ortholog 2 retrogenes
retro_ocun_130, retro_ocun_4,
Rattus norvegicus ENSRNOG00000000505 ortholog_one2many 4 retrogenes
retro_rnor_2302, retro_rnor_37, retro_rnor_400, retro_rnor_43,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,
Tursiops truncatus ENSTTRG00000009431 ortholog_one2one 6 retrogenes
retro_ttru_100, retro_ttru_1137, retro_ttru_1325, retro_ttru_1477, retro_ttru_205, retro_ttru_494,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_198 81.19 99.08
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2. retro_amel_318 77.78 98.16
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3. retro_amel_320 82.74 76.50
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4. retro_amel_417 72.48 99.08
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5. retro_amel_520 72.85 68.66
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6. retro_amel_609 68.64 98.16
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7. retro_amel_710 83.94 62.67
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8. retro_amel_970 72.66 63.13
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9. retro_amel_1144 78.34 99.54
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10. retro_amel_1223 74.59 84.33
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11. retro_amel_1262 75.00 97.70
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12. retro_amel_1591 80.73 99.08
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13. retro_amel_1813 80.39 92.63
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Download FASTA sequences of all ENSAMEG00000000670 retrocopies