NA ----> NA
Intron 1 GTAAGCCCAT ... TTTCTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.94 | 36 | 8 | 26 |
| A2 | 35.29 | 33 | 2 | 18 |
| A3 | 36.59 | 26 | 2 | 15 |
| A4 | 40.54 | 22 | 3 | 15 |
| A5 | 34.29 | 23 | 0 | 12 |
| A6 | 36.13 | 304 | 10 | 172 |
| A7 | 40.09 | 136 | 4 | 91 |
| A8 | 37.17 | 71 | 3 | 42 |
| A9 | 40.98 | 121 | 6 | 84 |
| A10 | 41.24 | 114 | 5 | 80 |
>TRINITY_DN93675_c0_g1_i1 from sample A1 / Example spliced isoformTTTTAATATATCGCGCGGTGTGAACAGCTGTGAACAGAGCAGATTCATTCATTCATTCCTCCCCTCGTTTGTCGCATCTATTTGTATTTGGAGGCCACTAACTGACACCAAAATACTTCCACATTCGCCTGCATTTCTTGGTAACCCAAAGTCAGATCTGTGTTGATCAAATAAGCCTTTGTGGGAGCCATGGGGGATTA
CAGATCTCGTACATATGGAGGGTCGGATTACAGGACGGACTTAGTGCCCTCCAAGGTCTACAACGGGGGAGGGCAGATTCAGGTTCAGCCTCAACCTCCTCAGTTACCCTATGCATATGATAGCGGGCATCAGCAGCCCCCTGTGTACATGGACGGGGCTTCTAATTACAAGCACACCAAGACCAAATCCTCCAAGGTAT
GGGGTTTAAATGATCCCGAAGTGAAGCGGCGAAAACGCGTGGCTAGTTATAAGGTCTACACAGTGGAGGGCAAGGTCAAGGGCTCCTTCCGAAAATCCTTCCGCTGGCTGAAGGACAAGTATAGTGAAATCGTCTACGGTTGGTGGTAGGATCGAATTCCCTCCACTCCCTTACTTGCCTGGGCAACCATGGATGATCCA
CACAGCTTGTGTACGAGGCGGTCCTTCTTAACCCTTTTGGTATTTTATCTGGTTTTGTGTCGCTGGATTAGGTAGACAAAAAAACAAACAATTGTATTAGCCTCGGGAGGACTCGATGGATGTCTTGTAGATTTTTTCTCTTGTTCTTGTTTTATGCATCCATAGTCTCAAGTCTTTTGTGTAAATTTTCAGTACGGGAT
CCAAATTTCGTGTTAATAACATCGTTTTATTTAATTTCGACTAAAAACATAGATGCCGCTTTTGAATTTTGATTAATCTGTTTTCTGTGCCACTTTCTATTTTGATTTAATTGGTCCATCGACAGAAGAGGTTTTGGGCAATGCATATTTTAACATTTCAGGAAAATTATATAGAACATGTTTTGAATTTCTGAGACAGA
GCTAGAGTCTTAGGGAAAATTTGAAAGGCCCACAACTTTCGTGTACGTGTAGAAAGCTTGGCTATTCGTAATCTTTATAGTTCTTAA
>TRINITY_DN93675_c0_g1_i2 from sample A1 / Example unspliced isoform:TTTTAATATATCGCGCGGTGTGAACAGCTGTGAACAGAGCAGATTCATTCATTCATTCCTCCCCTCGTTTGTCGCATCTATTTGTATTTGGAGGCCACTAACTGACACCAAAATACTTCCACATTCGCCTGCATTTCTTGgtaagcccatggcgctctacctgcccgcctgcattttgtttttctgcaaaattaatttat
gaatcaatggtttgcttgttggtgttttctgtcagGTAACCCAAAGTCAGATCTGTGTTGATCAAATAAGCCTTTGTGGGAGCCATGGGGGATTACAGATCTCGTACATATGGAGGGTCGGATTACAGGACGGACTTAGTGCCCTCCAAGGTCTACAACGGGGGAGGGCAGATTCAGGTTCAGCCTCAACCTCCTCAGTT
ACCCTATGCATATGATAGCGGGCATCAGCAGCCCCCTGTGTACATGGACGGGGCTTCTAATTACAAGCACACCAAGACCAAATCCTCCAAGGTATGGGGTTTAAATGATCCCGAAGTGAAGCGGCGAAAACGCGTGGCTAGTTATAAGGTCTACACAGTGGAGGGCAAGGTCAAGGGCTCCTTCCGAAAATCCTTCCGCT
GGCTGAAGGACAAGTATAGTGAAATCGTCTACGGTTGGTGGTAGGATCGAATTCCCTCCACTCCCTTACTTGCCTGGGCAACCATGGATGATCCACACAGCTTGTGTACGAGGCGGTCCTTCTTAACCCTTTTGGTATTTTATCTGGTTTTGTGTCGCTGGATTAGGTAGACAAAAAAACAAACAATTGTATTAGCCTCG
GGAGGACTCGATGGATGTCTTGTAGATTTTTTCTCTTGTTCTTGTTTTATGCATCCATAGTCTCAAGTCTTTTGTGTAAATTTTCAGTACGGGATCCAAATTTCGTGTTAATAACATCGTTTTATTTAATTTCGACTAAAAACATAGATGCCGCTTTTGAATTTTGATTAATCTGTTTTCTGTGCCACTTTCTATTTTGA
TTTAATTGGTCCATCGACAGAAGAGGTTTTGGGCAATGCATATTTTAACATTTCAGGAAAATTATATAGAACATGTTTTGAATTTCTGAGACAGAGCTAGAGTCTTAGGGAAAATTTGAAAGGCCCACAACTTTCGTGTACGTGTAGAAAGCTTGGCTATTCGTAATCTTTATAGTTCTTAA