sp|Q9LW77|HRD1A_ARATH ----> ERAD-associated E3 ubiquitin-protein ligase HRD1A
Intron 1 GTATTAAAAG ... TGCCAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 8 | 12 | 3 |
| A2 | 55.56 | 12 | 15 | 5 |
| A3 | 41.67 | 7 | 5 | 10 |
| A4 | 55.56 | 12 | 15 | 3 |
| A5 | 87.5 | 1 | 7 | 1 |
| A6 | 67.11 | 25 | 51 | 25 |
| A7 | 72.6 | 20 | 53 | 9 |
| A8 | 70.32 | 46 | 109 | 27 |
| A9 | 70 | 39 | 91 | 23 |
| A10 | 80.43 | 9 | 37 | 7 |
>TRINITY_DN43933_c4_g1_i4 from sample A8 / Example spliced isoformTTTGTATGGAGGAATGGACAACTGCAGGGGATCACCGCATATGCTCCCTTGCCTGTGGGCACATGTTTGGGATGTCCTGTATTAGAGAGTGGCTTCAACGACACAAGAACAATATTGGCAAGTGTCCACAATGCAATATCAAGGCTGAGCTGGGTGACATCAGAATTCTTTATGTGCCAGTTATAGCTCTCACTGGTCAA
CAATACTGACAGATCAGTTATCTTGGTTGCAATACCCACAGTTTTCGTCATCCTTAGAGCTTCATTCTGCATCTTTGTATGAGTAGGTGATGGATTTAGTATGGCTGAAGAATTATAAAACTATTGCCAACTGATATTAGTAGTCCTTAACATGCACCCACTAGACCAGTTTGACCAACTGCTATGATTGGCTAGGACTA
ATCCAAGATTGCAAAAGTCAGCCAAAGATAATTTTTTGAAGAAGTGACAGTTTGTTTGGAAAGTTGTTAGTAATATAGTTTTAGAATATGTACCTCAGACAGTCTTCTACATCAGCAGCAGTACTCACAGTGTCACAGCAGATCTGGGCACCTTCTTTACAGCAGCAGCAGATCCATACAGCATCCTAATGAGGGCACAG
GATCCTAGATCCATTTTCTTTGTACATCCCTTTCCTAGATCGGCTCTCCATCCTTGGAGTTCGCCTTCTGCTATTTAGGTTAGAATCATACTTTTCTTTCTGGATCTCTCTTTTATAGGAGCCTCCTTAGTGCTCCCACATTGTATTGACATCATGGTACCAAACAGTCCCATTGACCTACTTTTGTGGTCGTTCATTGG
ACATTAATAAAATTATCTTATCTACTCAGCACTTAGAAGATAAGTCATCTTGTATTGTCAACTAGCATAGCTACAAGAACAGAGAATCACGAGGAGGCATTGCAAGCCAGAACAAAAGATAACATTTTTCCATAAATATTGTTTGAGGAAAAGCATTTTCAAAGGGGAAGGCAATGTAATCTCCTTTATACATCCTATGG
AACATGACCTAATTAAAGGACATGACCTATGAACCATATAGGCAAGCGAATGTGTATAAGTATACCGCATGGCATTATAATTCTATCATCTTTTCATTCTATCTTATTCAATTATTAATTACTTGTCCTATATGGATTTCTGTTGTTTGTTTTATGTTGGATATTTGTTAGTAAATGAACTTTTTTTCA
>TRINITY_DN43933_c4_g1_i5 from sample A8 / Example unspliced isoform:TTTGTATGGAGGAATGGACAACTGCAGGGGATCACCGCATATGCTCCCTTGCCTGTGGGCACATGTTTGGGATGTCCTGTATTAGAGAGTGGCTTCAACGACACAAGAACAATATTGGCAAGTGTCCACAATGCAATATCAAGGCTGAGCTGGGTGACATCAGAATTCTTTATGTGCCAGTTATAGCTCTCACTGGTCAA
CAATACTGACAGATCAGTTATCTTGGTTGCAATACCCACAGTTTTCGTCATCCTTAGAGCTTCATTCTGCATCTTTGTATGAGTAGGTGATGGATTTAGTATGGCTGAAGAATTATAAAACTATTGCCAACTGATATTAGTAGTCCTTAACATGCACCCACTAGACCAGTTTGACCAACTGCTATGATTGGCTAGGACTA
ATCCAAGATTGCAAAAGTCAGCCAAAGATAATTTTTTGAAGgtattaaaaggccacttctccacagattctgtaaatatgtgtttggcaaagagtaatggtttggttctgacagaaaaggaaaacttgcaaactcttttaatttctgtgttgctccatcttattttcttctaaattctgtatcagcaacataatttttgt
ttattaatgtcttgttgccaatcagAAGTGACAGTTTGTTTGGAAAGTTGTTAGTAATATAGTTTTAGAATATGTACCTCAGACAGTCTTCTACATCAGCAGCAGTACTCACAGTGTCACAGCAGATCTGGGCACCTTCTTTACAGCAGCAGCAGATCCATACAGCATCCTAATGAGGGCACAGGATCCTAGATCCATTT
TCTTTGTACATCCCTTTCCTAGATCGGCTCTCCATCCTTGGAGTTCGCCTTCTGCTATTTAGGTTAGAATCATACTTTTCTTTCTGGATCTCTCTTTTATAGGAGCCTCCTTAGTGCTCCCACATTGTATTGACATCATGGTACCAAACAGTCCCATTGACCTACTTTTGTGGTCGTTCATTGGACATTAATAAAATTAT
CTTATCTACTCAGCACTTAGAAGATAAGTCATCTTGTATTGTCAACTAGCATAGCTACAAGAACAGAGAATCACGAGGAGGCATTGCAAGCCAGAACAAAAGATAACATTTTTCCATAAATATTGTTTGAGGAAAAGCATTTTCAAAGGGGAAGGCAATGTAATCTCCTTTATACATCCTATGGAACATGACCTAATTAA
AGGACATGACCTATGAACCATATAGGCAAGCGAATGTGTATAAGTATACCGCATGGCATTATAATTCTATCATCTTTTCATTCTATCTTATTCAATTATTAATTACTTGTCCTATATGGATTTCTGTTGTTTGTTTTATGTTGGATATTTGTTAGTAAATGAACTTTTTTTCA