sp|I1H0V9|VRN3_BRADI ----> Protein VERNALIZATION 3

Intron 1 GTAAGTTTAA ... CCGTAACAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	44.3	11	10.5	7
A2	58.68	7	9	11
A3	17.95	16	6	1
A4	55	1	1.5	1
A5	33.33	1	1	0
A6	70.84	1	2.5	2.5
A7	67	4	9	7.5
A8	45.45	3	2	3
A9	33.33	3	1	2
A10	9.09	5	0	1

>TRINITY_DN118870_c1_g6_i6 from sample A1 / Example spliced isoform

TTTCAGTTGGATGTAATCTACGGTGATAAACGAATATGCCTAGGTGATCAAGTCTTGCCTGCTGACGCGAATCAAAGACTACCTTAACGATCCTGACCATCCCGAGCTGGTGGAAACCTTCAGGGACCCCACATTATTCACAGTCACACTGGTTATGACGGATCCTGACACTCCTGGCGGCGAGTATTTGCACTGGTATG
CTATAAACTTCCTGAAGTTACATAAAATTATTGATTGTGCAGTTTATCTGTGAATGCATTAAATAACAATATTCATCGATACATTGTGCAGGTTATCTGTGAATGCCAATGCCCGTCTAGAATTTCTAGGGCGGATGCAATGGCAGGATCTGGTTACGTATGAAGCTCCAAGGGAAAGACGCATGGGTACCCGCAAGATA
GTTTTCACACTATTTGCTTCGGGTGTGCCGCGCCGTATAATTTTACCCCAGTCGCGGAAGAATTTCAGTACCAGTTTCTTTGCAGACACTAATGCACTTGGACCTCCGCTGGCAGCTTCCTTTTTCAAAATCATCGATCTGAATTGGATGACAATGGAGGTGGCGAAGCAGTTGCTTATAGAAGCGGGAGTTATCGGAGG
CATTGTGGGCGATTTTGATCCTCAATTTCATTTGGATGTAATCTACGGCCATAGACGAATATGCC

>TRINITY_DN118870_c1_g6_i1 from sample A1 / Example unspliced isoform:

TTTCAGTTGGATGTAATCTACGGTGATAAACGAATATGCCTAGGTGATCAAGTCTTGCCTGCTGACGCGAATCAAAGACTACCTTAACGATCCTGACCATCCCGAGCTGGTGGAAACCTTCAGGGACCCCACATTATTCACAGTCACACTGgtaagtttaaattctatttattcattatttttgccataccttttttaat
atatttggtcaaattgaaattcatattctcaagcatttcttgaacccgtaacaagGTTATGACGGATCCTGACGCTCCTGGCGGCGAGTATTTGCTCTGGCTATGTAGGCATTTCGTGGTGACCCCACATGATCAAG

Intron 2 GTATGCTATA ... CATTGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	24.78	170	10	56
A2	24.34	115	2	37
A3	20.62	154	5	40
A4	26.9	125	7	46
A5	20	96	6	24
A6	19.39	769	6	185
A7	21.25	771	11	208
A8	21.36	545	18	148
A9	20.02	795	10	199
A10	21.14	776	10	208

>TRINITY_DN118870_c1_g6_i5 from sample A1 / Example spliced isoform

GTAATCTACGGCGATAAACGAGTAAGCCTAGGTGATCAAGTCTCGTCTGCTCAAGTGCAGCACAGACCTCATGATTTTGAATACTTTCACCGACCTGCTCATCCCCTGTTCCCGGAAATACTCAGGCACGGCCCATTACTCGCAGTGGTTATGACGGATCTTGACGCTGCTGGCGGCGAGTATTTGCACTGGTTATCTGT
GAATGCCAATGCCCGTCTAGAATTTCTAGGGCGGATGCAATGGCAGGATCTGGTTACGTATGAAGCTCCAAGGGAAAGACGCATGGGTACCCGCAAGATAGTTTTCACACTATTTGCTTCGGGTGTGCCGCGCCGTATAATTTTACCCCAGTCGCGGAAGAATTTCAGTACCAGTTTCTTTGCAGACACTAATGCACTTG
GACCTCCGCTGGCAGCTTCCTTTTTCAAAATCATCGATCTGAATTGGATGACAATGGAGGTGGCGAAGCAGTTGCTTATAGAAGCGGGAGTTATCGGAGGCATTGTGGGCGATTTTGATCCTCAATTTCATTTGGATGTAATCTACGGCCATAGACGAATATGCC

>TRINITY_DN118870_c1_g6_i2 from sample A1 / Example unspliced isoform:

GTAATCTACGGCGATAAACGAGTAAGCCTAGGTGATCAAGTCTCGTCTGCTCAAGTGCAGCACAGACCTCATGATTTTGAATACTTTCACCGACCTGCTCATCCCCTGTTCCCGGAAATACTCAGGCACGGCCCATTACTCGCAGTGGTAAGATTAAATTGTATTTCGTCATTATTTTTCCAACGAATATTTTTTTTTAT
ATTAGGTCAAATCGAAATTATACTATTAAGCATTTCTTAAATCCATAATTAGGTTATGACGGACTTGACGCTGCTGGCGGCGAGTATTTGCACTGgtatgctataaacttcctgaagttacataaaattattgattgtgcagtttatctgtgaatgcattaaataacaatattcatcgatacattgtgcagGTTATCTGT
GAATGCCAATGCCCGTCTAGAATTTCTAGGGCGGATGCAATGGCAGGATCTGGTTACGTATGAAGCTCCAAGGGAAAGACGCATGGGTACCCGCAAGATAGTTTTCACACTATTTGCTTCGGGTGTGCCGCGCCGTATAATTTTACCCCAGTCGCGGAAGAATTTCAGTACCAGTTTCTTTGCAGACACTAATGCACTTG
GACCTCCGCTGGCAGCTTCCTTTTTCAAAATCATCGATCTGAATTGGATGACAATGGAGGTGGCGAAGCAGTTGCTTATAGAAGCGGGAGTTATCGGAGGCATTGTGGGCGATTTTGATCCTCAATTTCATTTGGATGTAATCTACGGCCATAGACGAATATGCC