sp|Q9FF66|UBC22_ARATH ----> Ubiquitin-conjugating enzyme E2 22
Intron 1 GTAATTGTTG ... TGGACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.31 | 271.3 | 7.7 | 45.9 |
| A2 | 15.11 | 211.2 | 6.9 | 38 |
| A3 | 14.63 | 209.2 | 1.9 | 36.5 |
| A4 | 10.55 | 229.7 | 2 | 27.4 |
| A5 | 11.75 | 89 | 1 | 12 |
| A6 | 10.07 | 356.4 | 2 | 40.6 |
| A7 | 9.56 | 955.8 | 4.8 | 102.1 |
| A8 | 8.64 | 782.1 | 3.9 | 75 |
| A9 | 9.93 | 1085.7 | 8.9 | 121.2 |
| A10 | 11.75 | 940.6 | 3.8 | 126.6 |
>TRINITY_DN123419_c5_g2_i2 from sample A1 / Example spliced isoformGGGGTTACTTGGACGTTGGTTCGATTAATTGCAAATGAATCGTTGTTTGAGATCCGGTTAATTGACGGGCCAGTATTTACAGGATAATAATGCACAGCGGATTGAATGGTCTTTAATGGCGATTGAATTTTCTTTTGACGTCCACGGAATGCGTTAGAAGATTTCACTCTGTCGCCACTGGACTTCTTTTCCGGTGATTT
TTACTGTCAGTATCGAAGGTGCAGAACCAATAATAGCGGAAGTTAAAACAGATCCGACGAGTCCCGACCGCTGAATCTTGTTCTGCAGCTCTCGAGGGTTTCAGATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATGTGAATGCTGACACGGTCCTTGTTAATTTTTT
ATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAGGCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGGCTGAAAACGAGAACCTACCACCCAGGGTGAT
AAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGGTATTTTG
TGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAG
CATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCTGAGGG
AGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAAGTCTTAAAAGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAATTGCATTGATCCTTT
GAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGTTAATGAAAACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGCTTTAAAAAAA
>TRINITY_DN123419_c5_g2_i8 from sample A1 / Example unspliced isoform:ATATTCTGCCTCTAAGCTCATGGTAAGTAAAATATGCCTTCTGTTTTTAAGGTTGAAAATTCCTTTGTTGTTATGTAGTTGCATTTGATTGTGCTTCTTTCTGCTTCCTGGTTCAATGTTCCTTAATGAAGAATCAGTCATTTTGAAACCTTGAAGTTAAACAAGATGTTGGATCTGTGTTTGATTTTACCTTCAAGATT
AGGGGTTTTACTTTTCTTCTACTAAGATCATTAGGTTGAAGTTGCCAACCATTGTGACAAGTCGGAGTACAGACAATTTTGTTAGATTTGTACATATTCTGCAGCCTGATCAATATGGACATAAATGAATATCTGGGCTCTTTATCTTGTCATTCCATCTTACATGCAAGATATGGAGGTTCCCTCCAACAAATCAGTAA
GTGGAAGTTTTCTCGGTAATTGAATCAGTGGTACATGGCAGAAAGCCTGACCCAGCTGGTGGATGATGGGGCCTTCTATCTCGTTATGGCTACTCAATTATTTCTACTGGAGCCTGCTGTGCTTTATATTAGCATTTTCTTTCTGTTTCTTTTTTAATGATACATAGATTTTTGGCATAAATCTCTCTTCTGCACTGTAA
GAGTGTCCCATTTCCGTTCATCTTCCTTAATGCTTAAATTAAAGGTACAGAGTTCAGATTAGTCTGCAATTTACAAAAATGTAGAAACCCTACGTCCTGGACAACTGCTTTTAGCAGGAATTGTGATATTACATCTTACTGACAAGATAGGGAGGTTTACTGCTGACCCAAACCGTGGATGTGGGCATCAGTGAATAGTT
TTGGGGCCTTTAGCTCGTTATAGCAAATGATCACTACTGAAGTCTGTTGTACAGAGTTCGGATTAGTCTCTGCAATTTACAAAAATGTAGAAACCCTACGCCCTGGACAACTGCTTTTGACAAGAATTGTGATATTACATCTTACCTACAAGATAGGGAGGTTCCTACTGAAAGTTTTCAGCCATTGCAACAAGTTGAAT
TCCAGGAAATTTTGTCAGTGGGACGCTGCATAAAGCCTGGCCCAACCCATGGATGTGGGAATCGGTGAATAGTTTTGGGGCCTCTAGCTTGTTATAGCAAATGTTCACTACTGAAGTCTGCTGTACTTTCCGTTAGCATTCACCTACAATTAAAATGCCGTATTGTGAATGTTTGTATTTTTTTTTTACTTTTGGCATAT
TTTTGTCTCTTTTGCAGTGCAAGAATGTCCCTTTTCCTTTCATCTCAATGCGTAAAGTTACAGAGTTCATATTTATCTGCAATTTACAAAAATGTGAAACCCCAACATCTTGGACAGCTGCTTTTAAATATGTTGCAACTGCATATTGCGTGTAGGCTGTTCTTTTTTGAGATTCTTATAATCACTTAATATGCTTACTG
TCAGGCATAGATTTTTGTGATGCTCTGCATTTTGGAGTAAATCTTGATAGGTATATACATATCTTATGTGTGACAGGCTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATAT
TTGCAGACATTGAAGGACCAGGTACATAACAAAAAAGAGTAATCCAGAACATTGCAACATATTTTAGATGTCCTATGCTTCAGAAAGAGATCATTTGTTCATATCACATTTACTGAAGGATCTGAATTCATTATTATTTACATAGTTATTACTAGTTTTTTACAGCATGAGCTATATATGCATTGATGCTTTTTCCTGCA
GCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGgtaattgttgatccttaagatgtgcttatcttaaatgtatattttctttagatgttttgttgcctgaagacattcttttttattttcttcatcaagtatacaaggaggatgcatgacttgt
gaaaactgagaaataacttgtgtattggactgcagGGTATTTTGTGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTATGTGTTCATTCCCTTGATAGTACTTGCTTTTTTGGTTCTAAGTATTGAC
TCTTCTACTCATATGATTGATGGATGATAAGTTGTCAGAGACCTTAGTTGTAAATGTTCTCTTAATGATGTATGGATTAATAGCTTGTAAA
Intron 2 GTCGGATTTT ... AAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.95 | 129 | 4 | 134 |
| A2 | 52.19 | 120 | 11 | 131 |
| A3 | 50.52 | 142 | 9 | 145 |
| A4 | 52.23 | 107 | 10 | 117 |
| A5 | 50 | 74 | 3 | 74 |
| A6 | 49.73 | 93 | 4 | 92 |
| A7 | 50.09 | 276 | 9 | 277 |
| A8 | 50 | 143 | 1 | 143 |
| A9 | 50.18 | 281 | 1 | 283 |
| A10 | 50 | 325 | 2 | 325 |
>TRINITY_DN119614_c2_g3_i9 from sample A3 / Example spliced isoformTGCCGCGCTCTGAATCGGCTCTACTTTCGTTATTTTGACCCTGGTTTCATGTGCGCTAGGGTATCATGTCATGAAAATGGTCTAATTCAGTAGATTGAAGCATTGCACTTTTAATTTTGTAGATGAGGGTGTTTTGGGGTTGGGTGGCTTGGTCTGAAATTTGGTCTTCTGGAGCTCTGTCTGCAGGAGATATTTGTTCC
TGATTTCTCTTGGGGATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATGTGAATGCTGACACGGTCCTTGTTAATTTTTTATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAG
GCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGGCTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTA
TATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGGTATTTTGTGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTG
CGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGG
CCCAAAAAATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCTGAGGGAGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAA
GTCTTAAAAGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAATTGCATTGATCCTTTGAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGT
TAATGAAAACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGCTTTAGTAGTGAGATTTCGTTATTTTGGGTATTCGTGAGATTTTGGCTTTTGGGTATTTTTGGATTTAGTTATTTTGGATGTAATTTTCAATGAATGGTATGCAGTTTTTGAAAACA
ATAGTTTTGTTGGTTTAAAATGTTAATCTGAACACCCAGGCATGAGGCATCCCATGATGAAAGCATTGAATCAGGATGAAATGTTGGGTTTCTTTGGCAATATTGAAATTTACTCTGGACAATTCTTCTGACAAGGGTATAAAAAATGCAAATGAACTTTTGTGTCTCTGGTGAATTCTTTGTTCCCTAGAGGTAAGATG
TGCATATATTACAAACATTCATATTGAATTTGGTTTCTTTTGCATGCATGCTCTATACAAGCATTCACCCAATGAAGCC
>TRINITY_DN119614_c2_g3_i2 from sample A3 / Example unspliced isoform:TGCCGCGCTCTGAATCGGCTCTACTTTCGTTATTTTGACCCTGGTTTCATGTGCGCTAGGGTATCATGTCATGAAAATGGTCTAATTCAGTAGATTGAAGCATTGCACTTTTAATTTTGTAGATGAGGGTGTTTTGGGGTTGGGTGGCTTGGTCTGAAATTTGGTCTTCTGGAGCTCTGTCTGCAGGAGATATTTGTTCC
TGATTTCTCTTGGGGgtcggattttttaagggcattgtaaatatttgcgatgaaatttgcattctttatattggtttctgggctttaaattactggaattatcgattattcatatgcacaaatgtaaagttatatttatgttcaaatccgagcaagataacctgttcttgtttaaattcagcttatctttctttagattt
cttgcgagcagaaaaatgcataacttcttcttgttttttcttttaaactttaattggttttggtttggggttttctatagggtcatgggttggacccttcttgtggaatcaccacttacatcagctgggtggtcacagtctcaactctgttgcaaattatttattgcacccactttgttaacttttgcccacgagttcaa
cttttctggattgattccttcaaaagacaatgcagagccctgtgaccctgaaactgaccctatgagaaagctggtattttaggttatcttgattatgtcggcattaagtcaatggctctgctaggaaaacaaatgtcgggctttttgtttaagttttaacagaagaggagaaatgaataaactagatgggtgtctgattg
tcattattttagggaagctcgggattggactctaaatttaacattctgctacgggttctgaaatttgcagATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATGTGAATGCTGACACGGTCCTTGTTAATTTTTTATCATCATACTGGTACAGACAGCTGAAGCCAGAG
ACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAGGCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGG
Intron 3 GTATTTTAGG ... AAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.27 | 112 | 5 | 68 |
| A2 | 8.07 | 114 | 10 | 66.5 |
| A3 | 7.67 | 132.5 | 11 | 73.5 |
| A4 | 11.16 | 103.5 | 13 | 61 |
| A5 | 7.79 | 71 | 6 | 37 |
| A6 | 2.34 | 83.5 | 2 | 46 |
| A7 | 3.67 | 249 | 9.5 | 140 |
| A8 | 1.51 | 130.5 | 2 | 72.5 |
| A9 | 2.61 | 261 | 7 | 141.5 |
| A10 | 0 | 284 | 0 | 164 |
>TRINITY_DN45660_c0_g2_i9 from sample A7 / Example spliced isoformTTATGTTCAAATCCGAGCAAGATAACCTGTTCTTGTTTAAATTCAGCTTATCTTTCTTTAGATTTCTTGCGAGCAGAAAAATGCATAACTTCTTCTTGTTTTTTCTTTTAAACTTTAATTGGTTTTGGTTTGGGGTTTTCTATAGGGTCATGGGTTGGACCCTTCTTGTGGAATCACCACTTACATCAGCTGGGTGGTCA
CAGTCTCAACTCTGTTGCAAATTATTTATTGCACCCACTTTGTTAACTTTTGCCCACGAGTTCAACTTTTCTGGATTGATTCCTTCAAAAGACAATGCAGAGCCCTGTGACCCTGAAACTGACCCTATGAGAAAGCTGATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGT
ATGTGAATGCTGACACGGTCCTTGTTAATTTTTTATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAGGCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCA
TGGCTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCT
GATTTTCCAAACTCTCCTCCAAAAGGGTATTTTGTGACAAAATTCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAA
GATGCTCATGGAAGACTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTAC
>TRINITY_DN45660_c0_g2_i13 from sample A7 / Example unspliced isoform:TTATGTTCAAATCCGAGCAAGATAACCTGTTCTTGTTTAAATTCAGCTTATCTTTCTTTAGATTTCTTGCGAGCAGAAAAATGCATAACTTCTTCTTGTTTTTTCTTTTAAACTTTAATTGGTTTTGGTTTGGGGTTTTCTATAGGGTCATGGGTTGGACCCTTCTTGTGGAATCACCACTTACATCAGCTGGGTGGTCA
CAGTCTCAACTCTGTTGCAAATTATTTATTGCACCCACTTTGTTAACTTTTGCCCACGAGTTCAACTTTTCTGGATTGATTCCTTCAAAAGACAATGCAGAGCCCTGTGACCCTGAAACTGACCCTATGAGAAAGCTGgtattttaggttatcttgattatgtcggcattaagtcaatggctctgctaggaaaacaaatg
tcgggctttttgtttaagttttaacagaagaggagaaatgaataaactagatgggtgtctgattgtcattattttagggaagctcgggattggactctaaatttaacattctgctacgggttctgaaatttgcagATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATG
TGAATGCTGACACGGTCCTTGTTAATTTTTTATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAGGCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGG
CTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGAT
TTTCCAAACTCTCCTCCAAAAGGGTATTTTGTGACAAAATTCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGAT
GCTCATGGAAGACTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTAC
Intron 4 GTATGTGTTC ... ACTGCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.16 | 231.3 | 67.1 | 6.6 |
| A2 | 20.8 | 192.3 | 51.4 | 10.6 |
| A3 | 22.47 | 225.8 | 66.5 | 14 |
| A4 | 21.17 | 188.3 | 51.8 | 10.4 |
| A5 | 13.59 | 89.6 | 14.6 | 9.8 |
| A6 | 14.7 | 336.5 | 60.6 | 13.7 |
| A7 | 16.34 | 861.8 | 171.6 | 31 |
| A8 | 13.55 | 781.4 | 125.8 | 26.5 |
| A9 | 14.15 | 984.7 | 167.6 | 34 |
| A10 | 15.82 | 878.8 | 169.5 | 25.6 |
>TRINITY_DN119614_c2_g3_i9 from sample A3 / Example spliced isoformTGCCGCGCTCTGAATCGGCTCTACTTTCGTTATTTTGACCCTGGTTTCATGTGCGCTAGGGTATCATGTCATGAAAATGGTCTAATTCAGTAGATTGAAGCATTGCACTTTTAATTTTGTAGATGAGGGTGTTTTGGGGTTGGGTGGCTTGGTCTGAAATTTGGTCTTCTGGAGCTCTGTCTGCAGGAGATATTTGTTCC
TGATTTCTCTTGGGGATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATGTGAATGCTGACACGGTCCTTGTTAATTTTTTATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAG
GCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGGCTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTA
TATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGGTATTTTGTGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTG
CGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGG
CCCAAAAAATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCTGAGGGAGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAA
GTCTTAAAAGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAATTGCATTGATCCTTTGAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGT
TAATGAAAACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGCTTTAGTAGTGAGATTTCGTTATTTTGGGTATTCGTGAGATTTTGGCTTTTGGGTATTTTTGGATTTAGTTATTTTGGATGTAATTTTCAATGAATGGTATGCAGTTTTTGAAAACA
ATAGTTTTGTTGGTTTAAAATGTTAATCTGAACACCCAGGCATGAGGCATCCCATGATGAAAGCATTGAATCAGGATGAAATGTTGGGTTTCTTTGGCAATATTGAAATTTACTCTGGACAATTCTTCTGACAAGGGTATAAAAAATGCAAATGAACTTTTGTGTCTCTGGTGAATTCTTTGTTCCCTAGAGGTAAGATG
TGCATATATTACAAACATTCATATTGAATTTGGTTTCTTTTGCATGCATGCTCTATACAAGCATTCACCCAATGAAGCC
>TRINITY_DN119614_c2_g3_i7 from sample A3 / Example unspliced isoform:CAGGCATAGATTTTTGTGATGCTCTGCATTTTGGAGTAAATCTTGATAGGTATATACATATCTTATGTGTGACAGGCTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATATT
TGCAGACATTGAAGGACCAGGTACATAACAAAAAAGAGTAATCCAGAACATTGCAACATATTTTAGATGTCCTATGCTTCAGAAAGAGATCATTTGTTCATATCACATTTACTGAAGGATCTGAATTCATTATTATTTACATAGTTATTACTAGTTTTTTACAGCATGAGCTATATATGCATTGATGCTTTTTCCTGCAG
CTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGTAATTGTTGATCCTTAAGATGTGCTTATCTTAAATGTGTATTTTCTTTAGATGTTTTGTTGCCTGAAGACATTCTTTTTTATTTTCTTCATCAAGTATACAAGGAGGATGCATGACTTGTG
AAAACTGAGAAATAACTTGTGTATTGGACTGCAGGGTATTTTGTGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTgtatgtgttcattcccttgatagtacttgcttttttggttctaagtattgact
cttctactcatatgattgatggatgataagttgtcagagaccttagttgtaaatgttctcttaatgctgtctggattaatagcttggaaagtgtgtttagaaatggatggactcaacatgagttataggaattgtgcttgttctattttgcttaaatgatatttgaaaactgaatatgcacatctatttaaatagcattg
tagcgtgctacatttgtctgtatacaacagtagttataggaattgtgcttgtcgcatatggcttaaaggatatttgcacatgaaggaacaacttaatggattttgctcgatcttggatctgttttcagtggccacttttaactttctatgatcgacaaccaagaaacttggggataaactgtttggggttcaaaatgtta
gattgacatgatgtgtgcacaatgagaactgactggatttcatgtgaagaataaatgctttgtatcaactctgcaacagtaaactgacagggacagtcatatgcattcttgtatcttagttacaggcaccagagtacatgattcttgtcataaacaatggtaagtactttcccgttctaaactattctgttttgattact
gctgtagGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAA
ATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCTGAGGGAGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAAGTCTTAAA
AGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAATTGCATTGATCCTTTGAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGTTAATGAAA
ACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGCTTTAGTAGTGAGATTTCGTTATTTTGGGTATTCGTGAGATTTTGGCTTTTGGGTATTTTTGGATTTAGTTATTTTGGATGTAATTTTCAATGAATGGTATGCAGTTTTTGAAAACAATAGTTTT
GTTGGTTTAAAATGTTAATCTGAACACCCAGGCATGAGGCATCCCATGATGAAAGCATTGAATCAGGATGAAATGTTGGGTTTCTTTGGCAATATTGAAATTTACTCTGGACAATTCTTCTGACAAGGGTATAAAAAATGCAAATGAACTTTTGTGTCTCTGGTGAATTCTTTGTTCCCTAGAGGTAAGATGTGCATATA
TTACAAACATTCATATTGAATTTGGTTTCTTTTGCATGCATGCTCTATACAAGCATTCACCCAATGAAGCC
Intron 5 GTATGTTAAT ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.99 | 208.4 | 16.3 | 56.8 |
| A2 | 19.54 | 185.9 | 21.5 | 46.4 |
| A3 | 12.59 | 197.9 | 19.3 | 29.4 |
| A4 | 22.76 | 170.8 | 30.8 | 51.8 |
| A5 | 14.4 | 77.6 | 18.6 | 13.4 |
| A6 | 14.58 | 371.6 | 43.7 | 65 |
| A7 | 15.31 | 967.5 | 98 | 180.4 |
| A8 | 19.03 | 903.9 | 78.8 | 220 |
| A9 | 15.82 | 1104.3 | 122.4 | 214.5 |
| A10 | 15.97 | 916.6 | 104.6 | 181.3 |
>TRINITY_DN123419_c5_g2_i2 from sample A1 / Example spliced isoformGGGGTTACTTGGACGTTGGTTCGATTAATTGCAAATGAATCGTTGTTTGAGATCCGGTTAATTGACGGGCCAGTATTTACAGGATAATAATGCACAGCGGATTGAATGGTCTTTAATGGCGATTGAATTTTCTTTTGACGTCCACGGAATGCGTTAGAAGATTTCACTCTGTCGCCACTGGACTTCTTTTCCGGTGATTT
TTACTGTCAGTATCGAAGGTGCAGAACCAATAATAGCGGAAGTTAAAACAGATCCGACGAGTCCCGACCGCTGAATCTTGTTCTGCAGCTCTCGAGGGTTTCAGATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATGTGAATGCTGACACGGTCCTTGTTAATTTTTT
ATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAGGCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGGCTGAAAACGAGAACCTACCACCCAGGGTGAT
AAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGGTATTTTG
TGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAG
CATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCTGAGGG
AGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAAGTCTTAAAAGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAATTGCATTGATCCTTT
GAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGTTAATGAAAACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGCTTTAAAAAAA
>TRINITY_DN123419_c5_g2_i7 from sample A1 / Example unspliced isoform:AAGCATATGCAAAGCATGCCAGgtatgttaatgatgcatccctctcttttttggtgctaatgtactcattctgagcttgaatatcattaggatcatactttacaatttttttaaaacacatgggtataaaatatatttgcacaattcatctatatctggacataattgaataattccagatatttccctgagtaaggcca
actaccctgaatatagtttctactcagtaatcagttgaacttatcattctctaagtaatttgacacattgtctaatgctgagtagtgcttctctattttctagggtttaccctcttggatcaccctttctcttatttcacttgtatcctatagcttgtagcttctaggagttgcttgtaccttgtatgtcacttagctta
taacttccaggaattgcttgtagcttgtctgtcacttactgggatttctagtcccattgaccttttttccttgttacgaattgtgctttatatttgtgtgctttatctatttttaattttttgtatttggtgaaattacagtgtgagtgttcttaatgtgtccatattcacacacctgcacctgcctttgcacaagtgcc
tttagtaattgtcaatgtgaatcttgttatgtcagtcataaagtattatattggataccattttgtagtggatgtgcattgtgaactgtagaggcttgctgtggatctagtcaactcttctgacaagggtataaaaaatgcaaatgaacttttatgtctggcgaaaactttgttcccaagaggtaagatgtgcttatatt
acaaacattaatgctgaattgggtttcttttgcagGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCAT
AAATGTTGCTTCAACAGAAGCTGAGGGAGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAAGTCTTAAAAGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTT
ATTCTGTGAAAATTGCATTGATCCTTTGAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGTTAATGAAAACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGC
TTTAAAAAAA
Intron 6 GTAAGTAAAA ... TGTGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.72 | 369 | 3 | 85 |
| A2 | 11.64 | 281 | 0 | 37 |
| A3 | 13.88 | 360 | 6 | 58 |
| A4 | 8.31 | 320 | 1 | 29 |
| A5 | 7.65 | 157 | 2 | 13 |
| A6 | 13.61 | 419 | 0 | 66 |
| A7 | 12.01 | 1400 | 0 | 191 |
| A8 | 15.43 | 718 | 0 | 131 |
| A9 | 13.03 | 1322 | 0 | 198 |
| A10 | 12.7 | 1340 | 0 | 195 |
>TRINITY_DN123419_c5_g2_i2 from sample A1 / Example spliced isoformGGGGTTACTTGGACGTTGGTTCGATTAATTGCAAATGAATCGTTGTTTGAGATCCGGTTAATTGACGGGCCAGTATTTACAGGATAATAATGCACAGCGGATTGAATGGTCTTTAATGGCGATTGAATTTTCTTTTGACGTCCACGGAATGCGTTAGAAGATTTCACTCTGTCGCCACTGGACTTCTTTTCCGGTGATTT
TTACTGTCAGTATCGAAGGTGCAGAACCAATAATAGCGGAAGTTAAAACAGATCCGACGAGTCCCGACCGCTGAATCTTGTTCTGCAGCTCTCGAGGGTTTCAGATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATGTGAATGCTGACACGGTCCTTGTTAATTTTTT
ATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAGGCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGGCTGAAAACGAGAACCTACCACCCAGGGTGAT
AAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGGTATTTTG
TGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAG
CATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCTGAGGG
AGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAAGTCTTAAAAGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAATTGCATTGATCCTTT
GAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGTTAATGAAAACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGCTTTAAAAAAA
>TRINITY_DN123419_c5_g2_i8 from sample A1 / Example unspliced isoform:ATATTCTGCCTCTAAGCTCATGgtaagtaaaatatgccttctgtttttaaggttgaaaattcctttgttgttatgtagttgcatttgattgtgcttctttctgcttcctggttcaatgttccttaatgaagaatcagtcattttgaaaccttgaagttaaacaagatgttggatctgtgtttgattttaccttcaagatt
aggggttttacttttcttctactaagatcattaggttgaagttgccaaccattgtgacaagtcggagtacagacaattttgttagatttgtacatattctgcagcctgatcaatatggacataaatgaatatctgggctctttatcttgtcattccatcttacatgcaagatatggaggttccctccaacaaatcagtaa
gtggaagttttctcggtaattgaatcagtggtacatggcagaaagcctgacccagctggtggatgatggggccttctatctcgttatggctactcaattatttctactggagcctgctgtgctttatattagcattttctttctgtttcttttttaatgatacatagatttttggcataaatctctcttctgcactgtaa
gagtgtcccatttccgttcatcttccttaatgcttaaattaaaggtacagagttcagattagtctgcaatttacaaaaatgtagaaaccctacgtcctggacaactgcttttagcaggaattgtgatattacatcttactgacaagatagggaggtttactgctgacccaaaccgtggatgtgggcatcagtgaatagtt
ttggggcctttagctcgttatagcaaatgatcactactgaagtctgttgtacagagttcggattagtctctgcaatttacaaaaatgtagaaaccctacgccctggacaactgcttttgacaagaattgtgatattacatcttacctacaagatagggaggttcctactgaaagttttcagccattgcaacaagttgaat
tccaggaaattttgtcagtgggacgctgcataaagcctggcccaacccatggatgtgggaatcggtgaatagttttggggcctctagcttgttatagcaaatgttcactactgaagtctgctgtactttccgttagcattcacctacaattaaaatgccgtattgtgaatgtttgtattttttttttacttttggcatat
ttttgtctcttttgcagtgcaagaatgtcccttttcctttcatctcaatgcgtaaagttacagagttcatatttatctgcaatttacaaaaatgtgaaaccccaacatcttggacagctgcttttaaatatgttgcaactgcatattgcgtgtaggctgttcttttttgagattcttataatcacttaatatgcttactg
tcaggcatagatttttgtgatgctctgcattttggagtaaatcttgataggtatatacatatcttatgtgtgacagGCTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATAT
TTGCAGACATTGAAGGACCAGGTACATAACAAAAAAGAGTAATCCAGAACATTGCAACATATTTTAGATGTCCTATGCTTCAGAAAGAGATCATTTGTTCATATCACATTTACTGAAGGATCTGAATTCATTATTATTTACATAGTTATTACTAGTTTTTTACAGCATGAGCTATATATGCATTGATGCTTTTTCCTGCA
GCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGTAATTGTTGATCCTTAAGATGTGCTTATCTTAAATGTATATTTTCTTTAGATGTTTTGTTGCCTGAAGACATTCTTTTTTATTTTCTTCATCAAGTATACAAGGAGGATGCATGACTTGT
GAAAACTGAGAAATAACTTGTGTATTGGACTGCAGGGTATTTTGTGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTATGTGTTCATTCCCTTGATAGTACTTGCTTTTTTGGTTCTAAGTATTGAC
TCTTCTACTCATATGATTGATGGATGATAAGTTGTCAGAGACCTTAGTTGTAAATGTTCTCTTAATGATGTATGGATTAATAGCTTGTAAA
Intron 7 GTATGAATTT ... TTTGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.22 | 8 | 2 | 15 |
| A2 | 45.76 | 32 | 4 | 27 |
| A3 | 50 | 21 | 0 | 21 |
| A4 | 52.38 | 20 | 0 | 22 |
| A5 | 48.39 | 16 | 1 | 15 |
| A6 | 51.26 | 58 | 2 | 61 |
| A7 | 51.05 | 117 | 13 | 122 |
| A8 | 49.48 | 98 | 3 | 96 |
| A9 | 51.82 | 159 | 2 | 171 |
| A10 | 50.41 | 122 | 2 | 124 |
>TRINITY_DN42163_c1_g1_i17 from sample A9 / Example spliced isoformTTCTAATATTGGAGAGTTCTTGTGGCTTTCAATATTGGGAGATGTGACCCTTGAAATTGTGACTAGTTTTGGAGGGTAAAGATTCCACCCTAGCTGGTGTGAGAGGAGAGATAACCTAGATCTCTTCATTATGCTTCATTGCCAGTGATTGAGAGGAGGAATCACACAGATTTCTCTATAGAGATTCATAAGTCATAAGA
CTTGTAGAACCCTTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTACCTCTCCTAC
TCCACTTGTACGATGCACAACAAATAAAGAAAATAGTATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCCGAGGGTGTTGGTGCATCAACAATTTTGGGCCAGCGTTTTCTGCGAGCTTTTGATACTCCTACTGGCCTTCCATATGCATGGATTAATATTAAGGTGCTCTTTTCTTATACTCGATAACATTCTG
CTAGCTCACTGTAAACTAATCCCAGTATTTCTTATTTGAAGCTTAGGTATCGACATCCTAGGCAGTGACAGAAACTCAAAGAAGTGAGTGTTTTGGAGTTTATTATGTTGATCGCTATGAACCTAAAATATTAAAGCAGTGGGGGAAATATGCTCCAGTGGTAAAGTCACTATTGGTAGAAGGTTGTTGAAATTTGATGC
TATAATAGCTAAGATACAAGCTCTGCAAGGATGGCTTGCAAGGCATTTATCTACATGTGTAAGCATGTAGATAACTTGAACCCTGTAAACAAAGCTTTTGTTGATATTCATTTTTGGAGAAATGGTCACTCAAAGAACATATATGAATTATTTGGAATTCTCCAGATTGTCCCTATTTATATTGGTTCTTG
>TRINITY_DN42163_c1_g1_i4 from sample A9 / Example unspliced isoform:TTCTAATATTGGAGAGTTCTTGTGGCTTTCAATATTGGGAGATGTGACCCTTGAAATTGTGACTAGTTTTGGAGGGTAAAGATTCCACCCTAGCTGGTGTGAGAGGAGAGATAACCTAGATCTCTTCATTATGCTTCATTGCCAGTGATTGAGAGGAGGAATCACACAGATTTCTCTATAGAGATTCATAAgtatgaatt
tattgagtgtttatttgcatgttagaggatttgacgatgttttgggtttcattcatgttgttttggtggtgtttgatagtgtttggaattgattattgttggcttggaagttctgctaccgtgggtgttccaaatattgaattggtgttggagaggccaaaatggatcttctagttcgaatatttatgagtatttatgga
ctatgatatatgttccattgaatttagagcatcatttctagtttggaacacttttcgcttcgtcaaaaaaggttttcgttttcttgagatatggccaatttaccatatccatgatttggagttctgtttcgaaattttcttctggttgaggagggcgcactagtggttgtctagatctcttacaggtggttctattggat
ttatataattcccatttggtataggacgcacttggaagagcatatatccaagttggggttgaaacctgtttgtgaagggtgcatctattagagaagatcttccatttggagctgtgcttcccatctttctctttgttatttactagcatccatctcaacgctatttgtatcagGTCATAAGACTTGTAGAACCCTTCCCG
GAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTACCTCTCCTACTCCACTTGTACGATGCAC
AACAAATAAAGAAAATAGTATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCCGAGGGTGTTGGTGCATCAACAATTTTGGGCCAGCGTTTTCTGCGAGCTTTTGATACTCCTACTGGCCTTCCATATGCATGGATTAATATTAAGGTGCTCTTTTCTTATACTCGATAACATTCTGCTAGCTCACTGTAAACTA
ATCCCAGTATTTCTTATTTGAAGCTTAGGTATCGACATCCTAGGCAGTGACAGAAACTCAAAGAAGTGAGTGTTTTGGAGTTTATTATGTTGATCGCTATGAACCTAAAATATTAAAGCAGTGGGGGAAATATGCTCCAGTGGTAAAGTCACTATTGGTAGAAGGTTGTTGAAATTTGATGCTATAATAGCTAAGATACA
AGCTCTGCAAGGATGGCTTGCAAGGCATTTATCTACATGTGTAAGCATGTAGATAACTTGAACCCTGTAAACAAAGCTTTTGTTGATATTCATTTTTGGAGAAATGGTCACTCAAAGAACATATATGAATTATTTGGAATTCTCCAGATTGTCCCTATTTATATTGGTTCTTGAGTAGCAACAGATTGGCCCTAATTACA
TCACCGGTTGTGCCTACTTTAAGTGCA
Intron 8 GTACATAACA ... TTTCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.29 | 315.7 | 43.6 | 18.5 |
| A2 | 3.21 | 254.9 | 40.7 | 9.3 |
| A3 | 3.19 | 289.4 | 41.7 | 10.6 |
| A4 | 3.16 | 279.6 | 37.4 | 10.1 |
| A5 | 2.33 | 122.9 | 15.1 | 3.3 |
| A6 | 2.26 | 420.7 | 58.3 | 11.3 |
| A7 | 2.08 | 1233.8 | 154.9 | 30.7 |
| A8 | 2.91 | 894.1 | 110.9 | 31.6 |
| A9 | 2.04 | 1315 | 142.1 | 30.8 |
| A10 | 1.54 | 1243.3 | 162.7 | 22.1 |
>TRINITY_DN123419_c5_g2_i2 from sample A1 / Example spliced isoformGGGGTTACTTGGACGTTGGTTCGATTAATTGCAAATGAATCGTTGTTTGAGATCCGGTTAATTGACGGGCCAGTATTTACAGGATAATAATGCACAGCGGATTGAATGGTCTTTAATGGCGATTGAATTTTCTTTTGACGTCCACGGAATGCGTTAGAAGATTTCACTCTGTCGCCACTGGACTTCTTTTCCGGTGATTT
TTACTGTCAGTATCGAAGGTGCAGAACCAATAATAGCGGAAGTTAAAACAGATCCGACGAGTCCCGACCGCTGAATCTTGTTCTGCAGCTCTCGAGGGTTTCAGATATTACCATCCATAGAAGATCAAGTGTGACTGGCAGATCAACTGCTGGAAAGGGATTTTGTATGTGAATGCTGACACGGTCCTTGTTAATTTTTT
ATCATCATACTGGTACAGACAGCTGAAGCCAGAGACGACCTGAAAACAAGCACTTTAGCTGTGTTGAAAAGACAACCACAAAGGTGTAGGCAACCAATTTGGGGATTTTCAGAAATTTCGGAAAGCAGTATATGTGCTGTAATAAAATATTCTGCCTCTAAGCTCATGGCTGAAAACGAGAACCTACCACCCAGGGTGAT
AAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATATTTGCAGACATTGAAGGACCAGCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGGTATTTTG
TGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCAGGGAAGATGCTCATGGAAGACTATGAAGCATATGCAAAG
CATGCCAGGCTCTATACAAGCATTCATGCAATGAAGCCCAAATTGAAAAGTAAAGTGGCTATTTCAGAATCTACTGCTTTAAATGAAGGCCCAAAAAATACCCTTGTTACATCTCCTACCCCACTTGTACCATGCACAACAAATAAAGAAAATAATATTCAAGATCCAAGCATAAATGTTGCTTCAACAGAAGCTGAGGG
AGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTTTGCCAAAGTACATGTTGATAAGAAGAAGCTCGATGCAAGGAAGAAAAGTCTTAAAAGATTGTAGAATTTTAGGCCTTTTTATCAGTCATTGAGTCTTTTTAACTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAATTGCATTGATCCTTT
GAGGCCAGATTGGGAAATGATGTATTTAGGTGGAAAGGCTTGGTCTCAGAATCTTTGGGAGCCAAAAATTTGGTACCTGAGATCATAGTTAATGAAAACTGCTGCAAGTTTGTCTGTTGGTATCTATAATTATTATTTTTGGAGCCCTCTTTTCAATAATTTTGGCTTTTGGCTTTAAAAAAA
>TRINITY_DN123419_c5_g2_i8 from sample A1 / Example unspliced isoform:ATATTCTGCCTCTAAGCTCATGGTAAGTAAAATATGCCTTCTGTTTTTAAGGTTGAAAATTCCTTTGTTGTTATGTAGTTGCATTTGATTGTGCTTCTTTCTGCTTCCTGGTTCAATGTTCCTTAATGAAGAATCAGTCATTTTGAAACCTTGAAGTTAAACAAGATGTTGGATCTGTGTTTGATTTTACCTTCAAGATT
AGGGGTTTTACTTTTCTTCTACTAAGATCATTAGGTTGAAGTTGCCAACCATTGTGACAAGTCGGAGTACAGACAATTTTGTTAGATTTGTACATATTCTGCAGCCTGATCAATATGGACATAAATGAATATCTGGGCTCTTTATCTTGTCATTCCATCTTACATGCAAGATATGGAGGTTCCCTCCAACAAATCAGTAA
GTGGAAGTTTTCTCGGTAATTGAATCAGTGGTACATGGCAGAAAGCCTGACCCAGCTGGTGGATGATGGGGCCTTCTATCTCGTTATGGCTACTCAATTATTTCTACTGGAGCCTGCTGTGCTTTATATTAGCATTTTCTTTCTGTTTCTTTTTTAATGATACATAGATTTTTGGCATAAATCTCTCTTCTGCACTGTAA
GAGTGTCCCATTTCCGTTCATCTTCCTTAATGCTTAAATTAAAGGTACAGAGTTCAGATTAGTCTGCAATTTACAAAAATGTAGAAACCCTACGTCCTGGACAACTGCTTTTAGCAGGAATTGTGATATTACATCTTACTGACAAGATAGGGAGGTTTACTGCTGACCCAAACCGTGGATGTGGGCATCAGTGAATAGTT
TTGGGGCCTTTAGCTCGTTATAGCAAATGATCACTACTGAAGTCTGTTGTACAGAGTTCGGATTAGTCTCTGCAATTTACAAAAATGTAGAAACCCTACGCCCTGGACAACTGCTTTTGACAAGAATTGTGATATTACATCTTACCTACAAGATAGGGAGGTTCCTACTGAAAGTTTTCAGCCATTGCAACAAGTTGAAT
TCCAGGAAATTTTGTCAGTGGGACGCTGCATAAAGCCTGGCCCAACCCATGGATGTGGGAATCGGTGAATAGTTTTGGGGCCTCTAGCTTGTTATAGCAAATGTTCACTACTGAAGTCTGCTGTACTTTCCGTTAGCATTCACCTACAATTAAAATGCCGTATTGTGAATGTTTGTATTTTTTTTTTACTTTTGGCATAT
TTTTGTCTCTTTTGCAGTGCAAGAATGTCCCTTTTCCTTTCATCTCAATGCGTAAAGTTACAGAGTTCATATTTATCTGCAATTTACAAAAATGTGAAACCCCAACATCTTGGACAGCTGCTTTTAAATATGTTGCAACTGCATATTGCGTGTAGGCTGTTCTTTTTTGAGATTCTTATAATCACTTAATATGCTTACTG
TCAGGCATAGATTTTTGTGATGCTCTGCATTTTGGAGTAAATCTTGATAGGTATATACATATCTTATGTGTGACAGGCTGAAAACGAGAACCTACCACCCAGGGTGATAAAAGAAATTGCAAGGGAGCTGAAGAGTCTCGATGAATCACCTCCTGGAGGCATAAAAGTGGTGCTGAATGATGGCAACTTTTCAACTATAT
TTGCAGACATTGAAGGACCAGgtacataacaaaaaagagtaatccagaacattgcaacatattttagatgtcctatgcttcagaaagagatcatttgttcatatcacatttactgaaggatctgaattcattattatttacatagttattactagttttttacagcatgagctatatatgcattgatgctttttcctgca
gCTGGTACTCCATATGAATGTGGCGTTTTTCGAATGAAACTAGTCTTAACCCCTGATTTTCCAAACTCTCCTCCAAAAGGTAATTGTTGATCCTTAAGATGTGCTTATCTTAAATGTATATTTTCTTTAGATGTTTTGTTGCCTGAAGACATTCTTTTTTATTTTCTTCATCAAGTATACAAGGAGGATGCATGACTTGT
GAAAACTGAGAAATAACTTGTGTATTGGACTGCAGGGTATTTTGTGACAAAAATCTTCCACCCTAATATTGCAAATAATGGAGAGATCTGTGTCAATACTCTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTATGTGTTCATTCCCTTGATAGTACTTGCTTTTTTGGTTCTAAGTATTGAC
TCTTCTACTCATATGATTGATGGATGATAAGTTGTCAGAGACCTTAGTTGTAAATGTTCTCTTAATGATGTATGGATTAATAGCTTGTAAA