sp|Q9LX20|ASPL1_ARATH ----> Aspartic proteinase-like protein 1
Intron 1 GTGAGTAATT ... TTGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.04 | 47.2 | 11.4 | 2.3 |
| A2 | 5.91 | 51 | 13.3 | 3.2 |
| A3 | 1.68 | 60.5 | 16.5 | 1.4 |
| A4 | 1.63 | 31.1 | 2.7 | 0.6 |
| A5 | 8.84 | 35.1 | 4.7 | 3.5 |
| A6 | 1.27 | 360.8 | 68.8 | 5.6 |
| A7 | 1.39 | 264.6 | 48.2 | 4.5 |
| A8 | 1.91 | 361.5 | 85.5 | 8.2 |
| A9 | 1.12 | 272.6 | 61.8 | 3.7 |
| A10 | 0.68 | 197 | 47.4 | 1.5 |
>TRINITY_DN112203_c2_g1_i2 from sample A2 / Example spliced isoformATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTG
GAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGAT
TCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATGATGCATTTAA
AAGCCTAACCAAACAATTTGATGCACAGGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATG
GGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGCTATCAACTAGATGAAAATGAAGGTGCTGTGGCCCCCGCTCCTTCACCTCAGAATGGCTTGGGAACTCGA
ACACCTCTACAGCAGCAGCAGACTTCTCCAGGACGGGCAGTTGCTCCAGCAATAGCAGGGAGAACTCCTAAAATAAACCATTCTGATTGTTTTCTGAGAAAGTCGGATATTGTAACATCCTTGTTATTTTCTTTTTCGGTTGGTGTAATTTTGCTCTTTGGACAATGGCATACCTGTACGTCAAGCTACTAAATTTATTT
CCTCACGTGCTTTTAGGATATACTGCACATATTAGTTTCTAGATGCCGCCATCTTCTGATTTACAGTGTTTTACCATCCTCTCTACACTAGTATTTAAAATGGCTTATTACTGTAACTATTGATTTATTTGTTCCTCTCCATTGTATCCTATTAGTATAACACTTAGTTGCTTTTACTTGAACTTGACATAGCATTTCTT
ATGAAACGTGTAAACTTTTTCTCTTTCCCAGACGTGCTTTCAAATATGCAATTTTGCTCACATTGCAGACAATGGTTTTTAGATGTTACTATTATTACTCATCTCTCGTTATGCTTGTTTACTAGTGCTGATCTATAGCAATGGCTTTATAGTATTTCTATGAA
>TRINITY_DN112203_c2_g1_i8 from sample A2 / Example unspliced isoform:ATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTG
GAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGAT
TCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATGATGCATTTAA
AAGCCTAACCAAACAAGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATGGGACGTTGGCAG
GTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTgtgagtaattggaagtgcagtatggaaacttttcctgtttcttatccatccactatatttctttattttcagtggaaagtttt
cctttgcgtctcttattcttttactatatttccttatttcccatccaacatcttacatttgttttgtgtgcagGCTATCAACTAGATGAAAATGAA
Intron 2 GTAAGCAAAA ... TGCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.91 | 26 | 3 | 18 |
| A2 | 15.87 | 53 | 4 | 10 |
| A3 | 22.64 | 41 | 4 | 12 |
| A4 | 10.34 | 26 | 6 | 3 |
| A5 | 20.83 | 19 | 6 | 5 |
| A6 | 20.48 | 233 | 5 | 60 |
| A7 | 21.08 | 161 | 9 | 43 |
| A8 | 24.73 | 213 | 8 | 70 |
| A9 | 18.24 | 242 | 8 | 54 |
| A10 | 18.38 | 151 | 2 | 34 |
>TRINITY_DN104709_c1_g2_i4 from sample A3 / Example spliced isoformCCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCATTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGC
TTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTTATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGC
AGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATATGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGC
TGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTGGAAGTGAACTTGCATCAGGTCATTCAGTAAAGACAC
GGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCG
GGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATGATGCATTTAAAAGCCTAACCAAACAATTTGATGCACAGGTGCCGTA
CCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGG
GCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGCTATCAACTAGATGAAAATGAAGGTGCTGTGGCCCCCGCTCCTTCACCTCAGAATGGCTTGGGAACTCGAACACCTCTACAGCAGCAGCAGACTTCTCCAGGACGG
GCAGTTGCTCCAGCAATAGCAGGGAGAACTCCTAAAATAAACCATTCTGATTGTTTTCTGAGAAAGTCGGATATTGTAACATCCTTGTTATTTTCTTTTTCGGTTGGTGTAATTTTGCTCTTTGGACAATGGCATACCTGTACGTCAAGCTACTAAATTTATTTCCTCACGTGCTTTTAGGATATACTGCACATATTAGT
TTCTAGATGCCGCCATCTTCTGATTTACAGTGTTTTACCATCCTCTCTACACTAGTATTTAAAATGGCTTATTACTGTAACTATTGATTTATTTGTTCCTCTCCATTGTATCCTATTAGTATAACACTTAGTTGCTTTTACTTGAACTTGACATAGCT
>TRINITY_DN104709_c1_g2_i5 from sample A3 / Example unspliced isoform:TGGGATCATTGCTATCAAGTAAGGTTGGTTGATTACCCTTGGTTGGCATTCATGATGGAGAATAATTATTTTATGCATCTGTATTTTTGGGTTCTTGTTGTCTACTGTCTCATTGTCTAACTTGTTTTATACCTTTACACTGCTTAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTT
TCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATgtaagcaaaattgccccatgctagaaatgttattgctttatgttattttttataaatttgaaagttcaagcacatgcttttttagtttatcaatgcaacttgatttggagcatgaaatcatctttatttttcttgcatttc
agGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGCTATCAACTAGATGAAAATGAAGGTGCTGTGGCCCCCGCTCCTTCACCTCAGAATGGCTTGGGAACT
CGAACACCTCTACAGCAGCAGCAGACTTCTCCAGGACGGGCAGTTGCTCCAGCAATAGCAGGGAGAACTCCTAAAATAAACCATTCTGATTGTTTTCTGAGAAAGTCGGATATTGTAACATCCTTGTTATTTTCTTTTTCGGTTGGTGTAATTTTGCTCTTTGGACAATGGCATACCTGTACGTCAAGCTACTAAATTTA
TTTCCTCACGTGCTTTTAGGATATACTGCACATATTAGTTTCTAGATGCCGCCATCTTCTGATTTACAGTGTTTTACCATCCTCTCTACACTAGTATTTAAAATGGCTTATTACTGTAACTATTGATTTATTTGTTCCTCTCCATTGTATCCTATTAGTATAACACTTAGTTGCTTTTACTTGAACTTGACATAGCT
Intron 3 GTTGGTTGAT ... CACTGCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.95 | 52 | 3.6 | 3.3 |
| A2 | 12.91 | 52 | 3.3 | 7.8 |
| A3 | 13.77 | 43 | 0.8 | 6.9 |
| A4 | 14.09 | 48 | 5.1 | 7.9 |
| A5 | 31.49 | 21 | 2 | 9.8 |
| A6 | 13.55 | 150 | 1 | 25.1 |
| A7 | 10.88 | 124 | 0.8 | 16.8 |
| A8 | 8.8 | 177 | 2.3 | 18 |
| A9 | 8.4 | 163 | 0 | 16.9 |
| A10 | 8.5 | 93 | 0 | 9.8 |
>TRINITY_DN112203_c2_g1_i9 from sample A2 / Example spliced isoformATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGAACTCTCTGGTGTTTGGGGCATTTGATTATGCAGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGG
ATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTGGAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGC
AAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGA
ACTTCATTCACATATCTTCCTAATGATGCATTTAAAAGCCTAACCAAACAAGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGT
AGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAATTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCA
TCCACTATATTTCTTTATTTTCAGTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA
>TRINITY_DN112203_c2_g1_i4 from sample A2 / Example unspliced isoform:ATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTG
GAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGAT
TCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACAGTAAGAAACTAATCCGTTCTTATAAATTGTGAGTATTAGCTGGCTGGAGGGATGTTAAACACAAGTCTTCAAACTGAAAATATAAGTCTAACTAAAAATTTGAAAGTTTCTATGCCTAGATGC
CCATGTTCACTTAATTAAAAACATGTGCATATGTCAACCCATGCTGTTTGGGTCAGTCATGCAATTCTGCAAGGCAATGGATGATCAACATGGTTTGCCACTGAATAATTGCAGGAGGTTTAATGGTTTATGACCATATGGTTCATTTTTTCTTTTATTTAGAGATATTGTTTGCATTCATTTTGGGCCATTTATACAGG
GATTCACTATCTAGAAGTATTCATGAAATATTCTTATTTTCTATTAGAACACATTTTTATTTAAACTATCAAAATGATTTTTTTCAGCCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATG
ATGCATTTAAAAGCCTAACCAAACAAGTAAGGATTTTGTCTACTTGTTTTGACTATTCTTTTATATAATTTGGTATGATATATCCTAGGTAATGTTTTAATATATTTGTTGCTAAAGTTAGACATTAACATATATTATAATCCTCTTCTTGGTAGTTTGATGCACAGGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTT
CCTTGGGATCATTGCTATCAAGTAAGgttggttgattacccttggttggcattcatgatggagaataattattttatgcatctgtatttttgggttcttgttgtctactgtctcattgtctaacttgttttatacctttacactgcttagTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTA
TTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAA
TTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCATCCACTATATTTCTTTATTTTCAGTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA
Intron 4 GTAAGGATTT ... TGATGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.71 | 74 | 23 | 1 |
| A2 | 30.39 | 71 | 31 | 6 |
| A3 | 25.35 | 53 | 18 | 1 |
| A4 | 17.33 | 62 | 13 | 6 |
| A5 | 27.27 | 24 | 9 | 2 |
| A6 | 22.13 | 197 | 56 | 0 |
| A7 | 24.48 | 145 | 47 | 2 |
| A8 | 17.84 | 198 | 43 | 1 |
| A9 | 21.3 | 170 | 46 | 0 |
| A10 | 30.05 | 128 | 55 | 0 |
>TRINITY_DN112203_c2_g1_i9 from sample A2 / Example spliced isoformATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGAACTCTCTGGTGTTTGGGGCATTTGATTATGCAGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGG
ATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTGGAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGC
AAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGA
ACTTCATTCACATATCTTCCTAATGATGCATTTAAAAGCCTAACCAAACAAGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGT
AGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAATTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCA
TCCACTATATTTCTTTATTTTCAGTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA
>TRINITY_DN112203_c2_g1_i4 from sample A2 / Example unspliced isoform:ATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTG
GAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGAT
TCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACAGTAAGAAACTAATCCGTTCTTATAAATTGTGAGTATTAGCTGGCTGGAGGGATGTTAAACACAAGTCTTCAAACTGAAAATATAAGTCTAACTAAAAATTTGAAAGTTTCTATGCCTAGATGC
CCATGTTCACTTAATTAAAAACATGTGCATATGTCAACCCATGCTGTTTGGGTCAGTCATGCAATTCTGCAAGGCAATGGATGATCAACATGGTTTGCCACTGAATAATTGCAGGAGGTTTAATGGTTTATGACCATATGGTTCATTTTTTCTTTTATTTAGAGATATTGTTTGCATTCATTTTGGGCCATTTATACAGG
GATTCACTATCTAGAAGTATTCATGAAATATTCTTATTTTCTATTAGAACACATTTTTATTTAAACTATCAAAATGATTTTTTTCAGCCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATG
ATGCATTTAAAAGCCTAACCAAACAAgtaaggattttgtctacttgttttgactattcttttatataatttggtatgatatatcctaggtaatgttttaatatatttgttgctaaagttagacattaacatatattataatcctcttcttggtagtttgatgcacagGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTT
CCTTGGGATCATTGCTATCAAGTAAGGTTGGTTGATTACCCTTGGTTGGCATTCATGATGGAGAATAATTATTTTATGCATCTGTATTTTTGGGTTCTTGTTGTCTACTGTCTCATTGTCTAACTTGTTTTATACCTTTACACTGCTTAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTA
TTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAA
TTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCATCCACTATATTTCTTTATTTTCAGTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA
Intron 5 GTAAGTTCAG ... ATGACAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.03 | 49.1 | 12.3 | 9.1 |
| A2 | 14.65 | 51.5 | 9.3 | 3.2 |
| A3 | 10.54 | 56.5 | 6.9 | 8 |
| A4 | 15.28 | 51 | 10.2 | 4.2 |
| A5 | 13.56 | 19.1 | 3.2 | 3.8 |
| A6 | 8.49 | 138.3 | 13.4 | 15.6 |
| A7 | 7.92 | 93.8 | 8.3 | 12.4 |
| A8 | 8.98 | 82.8 | 8.8 | 17.2 |
| A9 | 11.98 | 96.7 | 14.3 | 11.8 |
| A10 | 7.71 | 133.6 | 11.5 | 10.2 |
>TRINITY_DN123686_c6_g1_i7 from sample A1 / Example spliced isoformGCCACGTCAGGCCTCGTGCCACGTAAGCGGATATATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAA
TGGCCATGGAACCTGTGGTTGGTTACCGCTGCCATTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCA
TGACATTAAGCGGAGCTTGCAGAGACGGGAGCTTATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATT
GTATACAATGTGCACCTACTTCTGCCTCAACATATGGTCTGGAACTCTCTGGTGTTTGGGGCATTTGATTATGCAGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTG
TTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTGGAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCA
GTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAA
AGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATGATGCATTTAAAAGCCTAACCAAACAATTTGATGCACAGGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGT
CACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGC
TATCAACTAGATGAAAATGAAGGTGCTGTGGCCCCCGCTCCTTCACCTCAGAATGGCTTGGGAACTCGAACACCTCTACAGCAGCAGCAGACTTCTCCAGGACGGGCAGTTGCTCCAGCAATAGCAGGGAGAACTCCTAAAATAAACCATTCTGATTGTTTTCTGAGAAAGTCGGATATTGTAACATCCTTGTTATTTTC
TTTTTCGGTTGGTGTAATTTTGCTCTTTGGACAATGGCATACCTGTACGTCAAGCTACTAAATTTATTTCCTCACGTGCTTTTAGGATATACTGCACATATTAGTTTCTAGATGCCGCCATCTTCTGATTTACAGTGTTTTACCATCCTCTCTACACTAGTATTTAAAATGGCTTATTACTGTAACTATTGATTTATTTG
TTCCTCTCCATTGTATCCTATTAGTATAACACTTAGTTGCTTTTACTTGAACTTGACATAGCATTTCTTATGAAACGTGTAAACTTTTTCTCTTTCCCAGACGTGCTTTCAAATATGCAATTTTGCTCACATTGCAGACAATGGTTTTTAGATGTTACTATTATTACTCATCTCTCGTTATGCTTGTTTACTAGTGCTGA
TCTATAGCAATGGCTTTATAGTATTTCTATGAATAAATTGTCTCCACTGGAATCCTCTGTAATCTTGTTTATCATAGTCCACTTAATTTGCAGGTTTCAGATCTTGTTTACGTCCTACGAATTTTGTTGTTTGATTGAAACATATTGACGTACTTGTTTCCCTCCTAGAAAATTTGTTGTTTGGATTGAAGCATATTGAC
ATTGAAGAAGATTGTCGAAGTAATTATGTTTTTTACATGGATTTTCTTATTGGTCAACGAAACAG
>TRINITY_DN123686_c6_g1_i1 from sample A1 / Example unspliced isoform:GTAAAGACACGGGTGGTAATTGGgtaagttcagaaaccttcctatctatttgactagtaaatttcatcccatttagtattcctaaactgattgaaattgagaagttcacttatacttatgaattttattgtttagcttgcatggcattatattggagtgcatagtgacttgtgtcttatatatgcattttatgacaacag
CTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTA
CGCCATTCTTAGCCTTAAATGGGACACAGTAAGAAACTAATCCGTTCTTATAAATTGTGAGTATTAGCTGGCTGGAGGGATGTTAAACACAAGTCTTCAAACTGAAAATATAAGTCTAACTAAAAATTTGAAAGTTTCTATGCCTAGATGCCCATGTTCACTTAATTAAAAACATGTGCATATGTCAACCCATGCTGTTT
GGGTCAGTCATGCAATTCTGCAAGGCAATGGATGATCAACATGGTTTGCCA
Intron 6 GTAAGAAACT ... TTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.85 | 57 | 26 | 18 |
| A2 | 22.99 | 67 | 10 | 30 |
| A3 | 20.96 | 66 | 16 | 19 |
| A4 | 19.72 | 57 | 10 | 18 |
| A5 | 22.77 | 39 | 13 | 10 |
| A6 | 14.73 | 220 | 23 | 53 |
| A7 | 15.54 | 193 | 13 | 58 |
| A8 | 16.19 | 189 | 16 | 57 |
| A9 | 15.56 | 152 | 10 | 46 |
| A10 | 12.14 | 152 | 7 | 35 |
>TRINITY_DN112203_c2_g1_i9 from sample A2 / Example spliced isoformATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGAACTCTCTGGTGTTTGGGGCATTTGATTATGCAGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGG
ATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTGGAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGC
AAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGA
ACTTCATTCACATATCTTCCTAATGATGCATTTAAAAGCCTAACCAAACAAGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGT
AGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAATTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCA
TCCACTATATTTCTTTATTTTCAGTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA
>TRINITY_DN112203_c2_g1_i4 from sample A2 / Example unspliced isoform:ATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTG
GAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGAT
TCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACAgtaagaaactaatccgttcttataaattgtgagtattagctggctggagggatgttaaacacaagtcttcaaactgaaaatataagtctaactaaaaatttgaaagtttctatgcctagatgc
ccatgttcacttaattaaaaacatgtgcatatgtcaacccatgctgtttgggtcagtcatgcaattctgcaaggcaatggatgatcaacatggtttgccactgaataattgcaggaggtttaatggtttatgaccatatggttcattttttcttttatttagagatattgtttgcattcattttgggccatttatacagg
gattcactatctagaagtattcatgaaatattcttattttctattagaacacatttttatttaaactatcaaaatgatttttttcagCCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATG
ATGCATTTAAAAGCCTAACCAAACAAGTAAGGATTTTGTCTACTTGTTTTGACTATTCTTTTATATAATTTGGTATGATATATCCTAGGTAATGTTTTAATATATTTGTTGCTAAAGTTAGACATTAACATATATTATAATCCTCTTCTTGGTAGTTTGATGCACAGGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTT
CCTTGGGATCATTGCTATCAAGTAAGGTTGGTTGATTACCCTTGGTTGGCATTCATGATGGAGAATAATTATTTTATGCATCTGTATTTTTGGGTTCTTGTTGTCTACTGTCTCATTGTCTAACTTGTTTTATACCTTTACACTGCTTAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTA
TTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAA
TTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCATCCACTATATTTCTTTATTTTCAGTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA
Intron 7 GTAAGGATTT ... TTCTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.75 | 57 | 23 | 1 |
| A2 | 33.7 | 61 | 31 | 5 |
| A3 | 28.13 | 46 | 18 | 1 |
| A4 | 21.67 | 47 | 13 | 6 |
| A5 | 28.13 | 23 | 9 | 2 |
| A6 | 23.73 | 180 | 56 | 0 |
| A7 | 26.26 | 132 | 47 | 2 |
| A8 | 18.3 | 192 | 43 | 1 |
| A9 | 23 | 154 | 46 | 0 |
| A10 | 31.25 | 121 | 55 | 0 |
>TRINITY_DN112203_c2_g1_i10 from sample A2 / Example spliced isoformATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTG
GAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGAT
TCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACACCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATGATGCATTTAA
AAGCCTAACCAAACAATTTGATGCACAGGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTTCCTTGGGATCATTGCTATCAAGTAAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATG
GGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAATTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCATCCACTATATTTCTTTATTTTCA
GTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA
>TRINITY_DN112203_c2_g1_i4 from sample A2 / Example unspliced isoform:ATCGATTTCGAGGTGGGCGGTGCTTCGTATTTGAAACCTCCACTGCCATTTTCTTCAAACCCTCGAGAGTTGAGAACTGAAACCCTGGATCATTCATTTGTGCTCTACACTGCAAAAGTTTCCATCTTCAAATCCTCCTGTACAAGCAATGATGAAGGAAAATCAATGGCCATGGAACCTGTGGTTGGTTACCGCTGCCA
TTGTCATGTTGGCGGGCTCCTGCGGTGCTTTAACGCTTTCTTCGAAGATGATACACAGATTTTCGGATGAGGCCAGGGTCATATGGAGAGAGAGGCACGAGGGAGCCGAGCCTGGGCACTGGCCGAGGAAGGGCAGCGCCGAGTACTACGGGATGCTTTGGAGCCATGACATTAAGCGGAGCTTGCAGAGACGGGAGCTT
ATTGCCGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACCATTGAGTATGGCGAGAGCTTAGGATGGTTGCACTACACACGGGTTGACATTGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGTGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCAACATA
TGGTCTGGATAGAGATCTGAGCGAGTACAATCCGGCTGCATCTAGTACCAGCAAACATTTATCTTGTACCAACAACTTATGTGCATTAGGCCATAATTGCAAAACGAAGAGACAGTCGTGTCCTTATATTGTTGAATATCTATCTGATAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTGTACTTGGCCTCTG
GAAGTGAACTTGCATCAGGTCATTCAGTAAAGACACGGGTGGTAATTGGCTGTGGCAGAATACAAAGTGGTGGCTTTTTGAGTGGCGGGGCTCCAGATGGTCTTCTTGGTTTAGGACTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCAGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGAT
TCTGGAAGGATTTTTTTTGGGGACCAAGGGGCATCGGGCCAGAAGACTACGCCATTCTTAGCCTTAAATGGGACACAGTAAGAAACTAATCCGTTCTTATAAATTGTGAGTATTAGCTGGCTGGAGGGATGTTAAACACAAGTCTTCAAACTGAAAATATAAGTCTAACTAAAAATTTGAAAGTTTCTATGCCTAGATGC
CCATGTTCACTTAATTAAAAACATGTGCATATGTCAACCCATGCTGTTTGGGTCAGTCATGCAATTCTGCAAGGCAATGGATGATCAACATGGTTTGCCACTGAATAATTGCAGGAGGTTTAATGGTTTATGACCATATGGTTCATTTTTTCTTTTATTTAGAGATATTGTTTGCATTCATTTTGGGCCATTTATACAGG
GATTCACTATCTAGAAGTATTCATGAAATATTCTTATTTTCTATTAGAACACATTTTTATTTAAACTATCAAAATGATTTTTTTCAGCCCAACATATATTGTTGGAGTTGAAGAGATTCATGTTGGCTCAGCAGCAGTAAAAGGCTCAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCATTCACATATCTTCCTAATG
ATGCATTTAAAAGCCTAACCAAACAAgtaaggattttgtctacttgttttgactattcttttatataatttggtatgatatatcctaggtaatgttttaatatatttgttgctaaagttagacattaacatatattataatcctcttcttggtagTTTGATGCACAGGTGCCGTACCCAAAAGCTTCCTATGGAGGTCTT
CCTTGGGATCATTGCTATCAAGTAAGGTTGGTTGATTACCCTTGGTTGGCATTCATGATGGAGAATAATTATTTTATGCATCTGTATTTTTGGGTTCTTGTTGTCTACTGTCTCATTGTCTAACTTGTTTTATACCTTTACACTGCTTAGTGGAGGATCTAGGTCTTCAGATTCTCTTACTGTCCCTGTTGTGTCACTTA
TTTTCAAAGGAGGCGGCAAATTTTCTATCTTCAGTCCCGTAGTAAGGTTGTATACTGATAATGGGACGTTGGCAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAACTTTATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACATGCAGCTGGGTTGGTCTCCATCTGATTGTGAGTAA
TTGGAAGTGCAGTATGGAAACTTTTCCTGTTTCTTATCCATCCACTATATTTCTTTATTTTCAGTGGAAAGTTTTCCTTTGCGTCTCTTATTCTTTTACTATATTTCCTTATTTCCCATCCAACATCTTACATTTGTTTTGTGTGCAGGCTATCAACTAGATGAAAATGAA