sp|F4KFB3|PTST3_ARATH ----> Protein PTST homolog 3, chloroplastic

Intron 1 GTCTCCCTCT ... TAAAAGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	1	1	0
A2	57.14	3	4	1
A3	75	1	3	1
A4	-1	0	0	0
A5	0	2	0	0
A6	28.95	27	11	3
A7	22.73	51	15	7
A8	37.5	35	21	4
A9	44.74	21	17	8
A10	45.45	12	10	3

>TRINITY_DN40068_c0_g2_i8 from sample A8 / Example spliced isoform

TGTGGATTGTTTGGTATGAAAGCCAAGCACTTACTCCATGATGTGTATCGTCTTCCTCTAACTTCGTACATTTGTCGATCGTTTTAATTGGCATCAATTGAGCGAAAAACTATGGCAAATTTTTAATGGTAGATTCCTAAATAGTGAATGTCGATGAGATCATTTGGTGAGTAGGAGTGCTGGTGTTAGCTGTGGCGGCT
ATGGCGTGCTGCCAGATTATGCATTTGAACAGCAAATGGAGTTTGGGCACAGAGATGGGTATTATTCTCAAGGAGGAATGCAACTTTAGCTTTAAACCTCCTGGCCTCTGCATGAACGTCGCCTCCTCAGAAGGACAGCTAAGGCAACTTGGAAAGTTGAAAGCATCTAGGTCCCCAAGGAGTCATATAGATCTTCGCAA
GGAACTTCAGGACTTCATCTCTGAATTTGGTCTTCCTTCTGATTCAGTACCGTCATTGAAGCAACTTTCATGCCATGGAAGGGAAACATCTCCCAGATCCTTTGATAGGAAAATCAATGACCATTCCCAGTTCAATGTTGATAAAATTCCTGAGTCTGCTGGAATCAAGCATACCATGATGGAGCTTCATCATTTCAAAT
CTATTTTGCATACAAAGGAGTTAGAACTTGCCAAAATAAAGCAAGAACTTGAGAAGGAAAAGGCAGCATTATATTTAATACAATTGAAGGCCATGCAAGAGGTTGTACGGGTGAAGGAGATAGTTTCTCAGAAAGAATCCCAGTTAAGTGCAGCTGATCAAGAACTTTCAGATTTGAAGCAGGTCAGAATTGAATACTGG
GGCCATGGTCAAAATGTGGAGTTAACAGGCAGCTTCAATGGTTGGCAGCATCAAATTCCTATGGAACTGGAGCCAGCGTCTGAAATTCAAAATCCCACTGGAGAAAGGGGAGAAGCGATGTGGTCAACAAAATTATGGCTCTATCCTGGCAATTATGAGATCAAGTTCGTTGTGGATGGTAAATGGAAAATTGACCCTCG
ACGAGGGGTGGTGGTGACAAAGGACATGATTCAAAATAATGTTCTTAAAGTTGGAGATTAGCATAAGCCTATTCACATTATGTTAATTTACTTCCAAATTTGTATTATAGAAATATAGGTTTTCAATGTAAGTTGTCTCTCAATTTCCATTTCTAAAAGTTATTTGATTTTATAATATCATTATTGTCATGTCTATGCAT
A

>TRINITY_DN40068_c0_g2_i13 from sample A8 / Example unspliced isoform:

AGTTTCTCAGAAAGAATCCCAGTCAGAATTGAATACTGGGGCCATGGTCAAAATGTGGAGTTAACAGGCAGCTTCAATGGTTGGCAGCATCAAATTCCTATGGAACTGGAGCCAGCGTCTGAAATTCAAAATCCCACTGGAGAAAGGGGAGAAGCGATGTGGTCAACAAAATTATGGCTCTATCCTGGCAATTATGAGgt
ctccctcttacctttatagcttataatcacacaatcataaatcattgtgatgtgcaagtgacacatgtgcatcgacacacacttatacacacgaagtattaaaagaaagATCAAGTTCGTTGTGGATGGTAAATGGAAAATTGACCCTCGACGAGGGGTGGTGGTGACAAAGGACATGATTCAAAATAATGTTCTTAAAG
TTGGAGATTAGCATAAGCCTATTCACATTATGTTAATTTACTTCCAAATTTGTATTATAGAAATATAGGTTTTCAATGTAAGTTGTCTCTCAATTTCCATTTCTAAAAGTTATTTGATTTTATAATATCATTATTGTCATGTCTATGCATA

Intron 2 GTTAAGTGCA ... TTTGAAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	84.62	1	5	6
A2	60	1	1	2
A3	100	0	7	8
A4	86.67	1	6	7
A5	50	5	2	8
A6	95.35	1	21	20
A7	75	8	20	28
A8	92.31	3	36	36
A9	82.14	10	44	48
A10	65.79	13	19	31

>TRINITY_DN40068_c0_g2_i1 from sample A8 / Example spliced isoform

AGTTTCTCAGAAAGAATCCCAGTCAGAATTGAATACTGGGGCCATGGTCAAAATGTGGAGTTAACAGGCAGCTTCAATGGTTGGCAGCATCAAATTCCTATGGAACTGGAGCCAGCGTCTGAAATTCAAAATCCCACTGGAGAAAGGTTTGAACATTTTCTGGTTTTATATATTTTGCATATAAAGAGAAACTAAGAAGC
AACTTTAATGATTCACATTCATGGCTTGAGTAAATAAGGATTTGCTTTTGATAAACACAAGTTCATGGAGTGCTATATTCCAGTCAACCATTGATCTTCAGCAATGTAAACTAGATTTTGAAGGAAATAGCTAGATGTTGCAACTTTCAGAAGGTATCATTTGTTGCCAACATGCTACCATATTCATCAGGATTCTTTCC
TTCAAATGTTGATATGATGATATCTTGAATTGTATGGACCGCCATTGGTGGATTGGGAAATGCAATTCACAATTGAAATTTGATATTGAAATGCTAAACATATGCATTAAAATTCATGCTACTCTATAAAAGGTTTGTATCTTTTGGAGGGAAAGAAATCTCTACCCTATTTCTCAAGGTAAAATACAATATTCTATTGG
ACTAGCTAATCATTTTAAAAATAAAGGGAAATTGACTTTAATATTGCACGCTAGCAAATTGAAAATTACAATAGGTTTTGAATGAAGTGGGAAAGCTTTTAACGGGCTAGTGTTAGTATTCTTGGGTGGTGTTGCC

>TRINITY_DN40068_c0_g2_i10 from sample A8 / Example unspliced isoform:

TGTGGATTGTTTGGTATGAAAGCCAAGCACTTACTCCATGATGTGTATCGTCTTCCTCTAACTTCGTACATTTGTCGATCGTTTTAATTGGCATCAATTGAGCGAAAAACTATGGCAAATTTTTAATGGTAGATTCCTAAATAGTGAATGTCGATGAGATCATTTGGTGAGTAGGAGTGCTGGTGTTAGCTGTGGCGGCT
ATGGCGTGCTGCCAGATTATGCATTTGAACAGCAAATGGAGTTTGGGCACAGAGATGGGTATTATTCTCAAGGAGGAATGCAACTTTAGCTTTAAACCTCCTGGCCTCTGCATGAACGTCGCCTCCTCAGAAGGACAGCTAAGGCAACTTGGAAAGTTGAAAGCATCTAGGTCCCCAAGGAGTCATATAGATCTTCGCAA
GGAACTTCAGGACTTCATCTCTGAATTTGGTCTTCCTTCTGATTCAGTACCGTCATTGAAGCAACTTTCATGCCATGGAAGGGAAACATCTCCCAGATCCTTTGATAGGAAAATCAATGACCATTCCCAGTTCAATGTTGATAAAATTCCTGAGTCTGCTGGAATCAAGCATACCATGATGGAGCTTCATCATTTCAAAT
CTATTTTGCATACAAAGGAGTTAGAACTTGCCAAAATAAAGCAAGAACTTGAGAAGGAAAAGGCAGCATTATATTTAATACAATTGAAGGCCATGCAAGAGGTTGTACGGGTGAAGGAGATAGTTTCTCAGAAAGAATCCCAgttaagtgcagctgatcaagaactttcagatttgaagcagGTCAGAATTGAATACTGG
GGCCATGGTCAAAATGTGGAGTTAACAGGCAGCTTCAATGGTTGGCAGCATCAAATTCCTATGGAACTGGAGCCAGCGTCTGAAATTCAAAATCCCACTGGAGAAAGGGGAGAAGCGATGTGGTCAACAAAATTATGGCTCTATCCTGGCAATTATGAGGTCTCCCTCTTACCTTTATAGCTTATAATCACACAATCATA
AATCATTGTGATGTGCAAGTGACACATGTGCATCGACACACACTTATACACACGAAGTATTAAAAGAAAGGTGCTAATTCTTTTCTAAGTTTGAAACTTTTAGCATCCATTCTAGCCATGAATTTCATTGGGTTGTATGAGGGTAAATTAAATGTGTTTAAATCATGGATATAAGATCTCTACCCTTTTATCTTGTTTTC
TTTTTCACTTTTATGTTCTAATATTTCTTGACAAAGTGAAATTTTTTGTTTTCAAAGTTAATATATAGACAAATTCACAATCAC