sp|Q9LPZ1|MORF9_ARATH ----> Multiple organellar RNA editing factor 9, chloroplastic
Intron 1 GTAAGCTTCT ... TGCGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.65 | 95 | 44 | 1 |
| A2 | 32.85 | 92 | 45 | 0 |
| A3 | 38.37 | 106 | 66 | 2 |
| A4 | 27.4 | 53 | 20 | 5 |
| A5 | 37.29 | 37 | 22 | 0 |
| A6 | 34.7 | 766 | 407 | 1 |
| A7 | 35.66 | 765 | 424 | 4 |
| A8 | 33.47 | 797 | 401 | 5 |
| A9 | 34.1 | 605 | 313 | 0 |
| A10 | 37.19 | 483 | 286 | 0 |
>TRINITY_DN41308_c1_g1_i2 from sample A8 / Example spliced isoformCACAGTTGGGTAACCAGTAATACAGGTGCTGCTTTGTGACTGACAAAAGATATTCTTACTCAGGTGATAGACACAACAATGGGGTAATAACACCAGATCCTAATCCACCCAGGCCTCCTAGTGAGAGACCCAGACAGAGAAACTACGATAGGCCAAGATTTGATAGGGAAAGAGATCCCAGGGCCGGAGGAGGAAGAGAC
AATACACAGGGAGAACGCCAAGATTATAGACCCAGGCCAATGGAAGGAAGGGGAAATTACAGGCCTACAGAAGGACGGGACAATTACAGGCCTAGAGAAGGACGGGACAATTACAGGCCTACAGAAGGACGGGACAATTACAGGCCTATTGAACGAAGAGACACAATGCAGGGAGAGCGACGAGATAATAGGCCACCATA
TGAACGAAGAGAGTCAATGCAGGGGGAACGGAGGGAATATATGCGACCCGAGGATCGAGGAGACCCTGTGCCACCTATTGACAGAAGAGATTCATTCTAAAGATATGCCAATTATGTGTGGTCAAGACTCAAGACTCAAGAGAAGCACTTGGAGAAGGTAGATTACAACTTTGTGATAGCTGAAGAAAATAGAAGGCATA
TACCAAATCTGGTGTCTTGCTTCTCTCCCACTTACTGGTTCCAAAGAGTTCATAATTGTTCATTTGTTCATTGGAAATTTTGTTATGTGGTTATCACATGGAGAGTGCAAATGGTAGATGTGGTATCTGAAGTCTAGAGGTTTATGTGAATAGATCTTTCTGATTTTCTGTTTAGAAGATATAGGGAAAATGGGTGTTAT
GACTGTGATCTTAGACTTCATTTACTGGACTATTAAGTACTTTCAATATCTACAGGTTTGGATGTTTTTAATTCTGGTTGTATAATGTAGCACAATCTCCATGGTTTGATTGAGCCTTTGTTTCTAAATTTTCTGTATAAATACTATAGGGAATGGGTGTTATGACTATGATCTAATACTTAAATATGTTCTTTATTTGC
TATTGGACTATAACTACCGACAATATCTACAGGTTTTGTGTTTTAAGTCTGATTGTTATTGTAGCACAATCTCCATGGTAGCATGAACTCATTGTTGTTGGAATCCATGTCTTATTCTGAATA
>TRINITY_DN41308_c1_g1_i3 from sample A8 / Example unspliced isoform:TTTCAGTGTAATATAGATGAAGCCACATCAGAAAGACTAAAAGAGCAGCCTCTTGTTAATTGGGTGCTTCCTGATGGGTATGGTGACCCTGAACTTGGTATATTTGCAGGTGATAGATACAACAATGGGGTAATAACACCAGATCCTAATCCACCCAGGCCTCCTAGTGAGAGACCCAGACAGAGAAACTACGATAGGCC
AAGATTTGATAGGGAAAGAGATCCCAGGGCCGGAGGAGGAAGAGACAATACACAGGGAGAACGCCAAGATTATAGACCCAGGCCAATGGAAGGAAGGGGAAATTACAGGCCTACAGAAGGACGGGACAATTACAGGCCTAGAGAAGGACGGGACAATTACAGGCCTACAGAAGGACGGGACAATTACAGGCCTATTGAAC
GAAGAGACACAATGCAGGGAGAGCGACGAGATAATAGGCCACCATATGAACGAAGAGAGTCAATGCAGGGGGAACGGAGGGAATATATGCGACCCGAGGATCGAGGAGACCCTGTGCCACCTATTGACAGAAGAGATTCATTCTAAAGATATGCCAATTATGTGTGGTCAAGACTCAAGACTCAAGAGAAGCACTTGGAG
AAGgtaagcttctaaatatgagctggaaaatatgatatcttaactctatgtataacacatgaaactgactatgtcttattaaatgagtaacatgtgttatatagggttaaactcaagtaaacaagattacattccaactaaagatagagatgtgttgggataatttataatttggtatcagaattatttaattggcaaac
tgttatttgtgcatgctttaattctgtttttgtggtgtaaaactttggagttatcagtctgtgctgtgtcctctccatcccaaaaaagggaaatatttctgaattgacttgcctcttctataacatattatttttcttgaataaagtttgattgcaatcttgcgatgcagGTAGATTACAACTTTGTGATAGCTGAAGAA
AATAGAAGGCATATACCAAATCTGGTGTCTTGCTTCTCTCCCACTTACTGGTTCCAAAGAGTTCATAATTGTTCATT
Intron 2 GTATTTTGTT ... TGTCTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.94 | 71 | 13 | 10 |
| A2 | 10 | 63 | 2 | 12 |
| A3 | 13.09 | 83 | 15 | 10 |
| A4 | 10.53 | 51 | 2 | 10 |
| A5 | 11.11 | 44 | 5 | 6 |
| A6 | 11.46 | 313 | 29 | 52 |
| A7 | 10.66 | 356 | 33 | 52 |
| A8 | 11.52 | 311 | 36 | 45 |
| A9 | 12.5 | 357 | 43 | 59 |
| A10 | 10.66 | 264 | 23 | 40 |
>TRINITY_DN41584_c0_g2_i1 from sample A7 / Example spliced isoformGCAAATAGTAAGAATAGATCAAAGCGTTCTACAACCTGTGAACCCGTATTCTGTTACCTCTAAACCCTAAGCTCTGACTGAGATCTTGTGGAGAGTTGGATTCATCCATGGCGATCCGAGCAGCCGGTCGTCTTCGATGCGCTTCGAGCTTAGCAAGAGCATTCTCTTCATCAACTCCATCTTTGTCTGTCTTTACAGAT
GGTTGCTCTTCTGGTTTGGCAACATTAACAAGAGCATCGTCACCATTATCATTGGAGCATCTTTTCGGTTACGGCCAGTTATCTGGTTTTGAGGGGCGGCCATGCCCACCTTGGCGTCATATGTTAGCCCGCTGCAGATCATGGACGGAGTTACGGGACTGCAAGCATTGGCTAATCACTCTGGATTTTCCCAAGGACCC
TAGGCCTACACGGGAAGAAATGATTGAAACCTATGTTAAAACCCTTGCTGCTGTTCTCGGAAGTGAAGAGGAGGCTAAAAAGAAAATCTATGCCCTGAGTACCACTGTGTACACTGGATTTCAATGTAATATAGATGAAGCCACATCAGAAAGACTAAAAGAGCAGCCTCTTGTTAATTGGGTGCTTCCTGATGGGTATG
GTGACCCTGAACTTGGTATATTTGCAGGTGATAGATACAACAATGGGGTAATAACACCAGATCCTAATCCACCCAGGCCTCCTAGTGAGAGACCCAGACAGAGAAACTACGATAGGCCAAGATTTGATAGGGAAAGAGATCCCAGGGCCGGAGGAGGAAGAGACAATACACAGGGAGAACGCCAAGATTATAGACCCAGG
CCAATGGAAGGAAGGGGAAATTACAGGCCTACAGAAGGACGGGACAATTACAGGCCTAGGACAATTACAGGCCTAGAGAAGGACGGGACAATTACAGGCCTATTGAACGAAGAGACACAATGCAGGGAGAGCGACGAGATAATAGGCCACCATATGAACGAAGAGAGTCAATGCAGGGGGAACGGAGGGAATATATGCGA
CCCGAGGATCGAGGAGACCCTGTGCCACCTATTGACAGAAGAGATTCATTCTAAAGATATGCCAATTATGTGTGGTCAAGACTCAAGACTCAAGAGAAGCACTTGGAGAAGGTAGATGACAACTTTGTGATAGCTGAAGAAAATAGAAGGCATATACCAAATCTGGTGTCTTGCTTCTCTCCCACTTACTGGTTCCAAAG
AGTTCATAATTGTTCATTGGAAATTTTGTTATGTGGTTATCACATGGAGAGTGCAAATGGTAGATGTGGTATCTGAAGTCTAGAGGTTTATGTGAATAGATCTTTCTGATTTTCTGTTTAGAAGATATAGGGAAAATGGGTGTTATGACTGTGATCTTAGACTTCATTTACTGGACTATTAAGTACTTTCAATATCTACA
GGTTTGGATGTTTTTAATTCTGGTTGTATAATGTAGCACAATCTCCATGGTTTGATTGAGCCTTTGTTTCTAAATTTTCTGTATAAATACTATAGGGAATGGGTGTTATGACTATGATCTAATACTTAAATATGTTCTTTATTTGCTATTGGACTATAACTACCGACAATATCTACAGGTTTTGTGTTTTAAGTCTGATT
GTTATTGTAGCACAATCTCCATGGTAG
>TRINITY_DN41584_c0_g2_i4 from sample A7 / Example unspliced isoform:GCAAATAGTAAGAATAGATCAAAGCGTTCTACAACCTGTGAACCCGTATTCTGTTACCTCTAAACCCTAAGCTCTGACTGAGATCTTGTGGAGAGTTGGATTCATCCATGGCGATCCGAGCAGCCGGTCGTCTTCGATGCGCTTCGAGCTTAGCAAGAGCATTCTCTTCATCAACTCCATCTTTGTCTGTCTTTACAGAT
GGTTGCTCTTCTGGTTTGGCAACATTAACAAGAGCATCGTCACCATTATCATTGGAGCATCTTTTCGGTTACGGCCAGTTATCTGGTTTTGAGGGGCGGCCATGCCCACCTTGGCGTCATATGTTAGCCCGCTGCAGATCATGGACGGAGTTACGGGACTGCAAGCATTGGCTAATCACTCTGGATTTTCCCAAGGACCC
TAGGCCTACACGGGAAGAAATGATTGAAACCTATGTTAAAACCCTTGCTGCTGTTCTCGGAAGgtattttgtttcattttaattcattcttcatgttaccaggtattcttaatttgttcctctcatttccctctctctcggagggattttgttctccttgctataaaacacttgttaaaaaatgtgggagtgtcagagca
ttaatctcacattaacgacaatggtgggagtgtcaaggtgttaatctcacattaacgacagtggtaaaaccaaggtgatttatgaagcacttcactcaccaaaaacttgaccattctgaaaatgggctttggagtggccattgtttagtttgattgttttgttgcttttgtgaagactattttttggttacaagcttact
aaaaaatccaagtggtatatcctttgttgagcgttgagctttgggctccatgttagtttgagtatcatatgcatgaaaaactttgtcaattcaaaatatggttttgggatgcaattcccaattttggtgtgatactattctctcacacttttaacagagagatgtctttatgattcattttgtttgcaagtttactaaaa
tcaaagtgcatatcctttttaagactatttcaaacttattacacgtgcacaccctttatgtcttatagTGAAGAGGAGGCTAAAAAGAAAATCTATGCCCTGAGTACCACTGTGTACACTGGATTTCAATGTAATATAGATGAAGCCACATCAGAAAGACTAAAAGAGCAGCCTCTTGTTAATTGGGTGCTTCCTGATGG
GTATGGTGACCCTGAACTTGGTATATTTGCAGGTGATAGATACAACAATGGGGTAATAACACCAGATCCTAATCCACCCAGGCCTCCTAGTGAGAGACCCAGACAGAGAAACTACGATAGGCCAAGATTTGATAGGGAAAGAGATCCCAGGGCCGGAGGAGGAAGAGACAATACACAGGGAGAACGCCAAGATTATAGAC
CCAGGCCAATGGAAGGAAGGGGAAATTACAGGCCTACAGAAGGACGGGACAATTACAGGCCTAGGACAATTACAGGCCTAGAGAAGGACGGGACAATTACAGGCCTATTGAACGAAGAGACACAATGCAGGGAGAGCGACGAGATAATAGGCCACCATATGAACGAAGAGAGTCAATGCAGGGGGAACGGAGGGAATATA
TGCGACCCGAGGATCGAGGAGACCCTGTGCCACCTATTGACAGAAGAGATTCATTCTAAAGATATGCCAATTATGTGTGGTCAAGACTCAAGACTCAAGAGAAGCACTTGGAGAAGGTAGATGACAACTTTGTGATAGCTGAAGAAAATAGAAGGCATATACCAAATCTGGTGTCTTGCTTCTCTCCCACTTACTGGTTC
CAAAGAGTTCATAATTGTTCATTGGAAATTTTGTTATGTGGTTATCACATGGAGAGTGCAAATGGTAGATGTGGTATCTGAAGTCTAGAGGTTTATGTGAATAGATCTTTCTGATTTTCTGTTTAGAAGATATAGGGAAAATGGGTGTTATGACTGTGATCTTAGACTTCATTTACTGGACTATTAAGTACTTTCAATAT
CTACAGGTTTGGATGTTTTTAATTCTGGTTGTATAATGTAGCACAATCTCCATGGTTTGATTGAGCCTTTGTTTCTAAATTTTCTGTATAAATACTATAGGGAATGGGTGTTATGACTATGATCTAATACTTAAATATGTTCTTTATTTGCTATTGGACTATAACTACCGACAATATCTACAGGTTTTGTGTTTTAAGTC
TGATTGTTATTGTAGCACAATCTCCATGGTAG