NA ----> NA

Intron 1 GTAATTATTT ... TCCCTGCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	16.78	76	10.7	20
A2	7.09	59	0	9
A3	16.04	102	22	17
A4	16.61	41	6.3	10
A5	14.06	54	3.7	14
A6	12.25	598	58	109
A7	13.9	550	69.3	108.3
A8	14.78	589	63.3	141
A9	12.37	627	75	102
A10	13.26	495	61.3	90

>TRINITY_DN113073_c0_g1_i1 from sample A1 / Example spliced isoform

TATATATTCCGCCCTGGCGTTCGATTTCATTTTTTCTTGTGGCCAGATCATTAATTTCATCCACCATGGCCATGGGCGCGGCCGCTGTACTTTCATCGCCCCTGCTTCAACGCCCCGTTTTTCTTTCCCATTCTCATTATGAAACCCTTGATGAATCTGAGTTTGAAGAATGCAACACCCTCACTGTGCTTGATTATGGG
AATAAGAAAAGCCACTGGATGACGCCGCAGTATCTAATGTTACAGCTTCGCTGCTCCAGGTTGATGAGAGCTGAAGCCCGACAGGCTCTCAGGGGCCATTTCAGAGAAGAAAGCCATCAAAATCTGCAGCGATTGCCGAAGATTTATAAGGAAACGGACACGGCAGAGAGAAGCAGCGTGAATCGAACTCTGCTTCCCGC
GTTCCTGGCCGTGCCGTTGGATGACCGGGAAGCCGTGTCTGGGCATTTGGAAGAGTCCTTTGACCAGTGATTGAGTGAGAATCGGATTGGAAATCCAAGGCAGGAAGAGGAAGCTACAGACCGAATTCAAAGTTCATTCAAGGGAGAAATCATGAGATCCAAAGGGAAAGACAGACTGCTGTACTTCTACTACGAACAGG
GGGTGATCCGTTACACGTTTGATAAAAGGAAATCGAAATCTGCTGGTTTTCTTTTAGTAGGCCGTGCATACCTCTGAGATCTGTCACGAAATATTTTCTGCATTATAACATTTATTTTTTCGGGTATTAGCAGAATTAGTTCACTCTGCTCGTATGTTTCTTTCCTTTTTTCAGTTGATGTATTCTTAATATAAATATTA
ATATACAAAGGAAAATTCTTTTCGTAC

>TRINITY_DN113073_c0_g1_i2 from sample A1 / Example unspliced isoform:

TATATATTCCGCCCTGGCGTTCGATTTCATTTTTTCTTGTGGCCAGATCATTAATTTCATCCACCATGGCCATGGGCGCGGCCGCTGTACTTTCATCGCCCCTGCTTCAACGCCCCGTTTTTCTTTCCCATTCTCATTATGAAACCCTTGATGAATCTGAGTTTGAAGAATGCAACACCCTCACTGTGCTTGATTATGGG
AATAAGAAAAGCCACTGGATGACGCCGCAGTATCTAATGTTACAGCTTCGCTGCTCCAGgtaattattttataattcttgatattcatttatgcctttaatttgcatacagaatccagactcggcttatatgtcggttcttgatttttccctgctagGTTGATGAGAGCTGAAGCCCGACAGGCTCTCAGGGGCCATTTC
AGAGAAGAAAGCCATCAAAATCTGCAGCGATTGCCGAAGATTTATAAGGAAACGGACACGGCAGAGAGAAGCAGCGTGAATCGAACTCTGCTTCCCGCGTTCCTGGCCGTGCCGTTGGATGACCGGGAAGCCGTGTCTGGGCATTTGGAAGAGTCCTTTGACCAGTGATTGAGTGAGAATCGGATTGGAAATCCAAGGCA
GGAAGAGGAAGCTACAGACCGAATTCAAAGTTCATTCAAGGGAGAAATCATGAGATCCAAAGGGAAAGACAGACTGCTGTACTTCTACTACGAACAGGGGGTGATCCGTTACACGTTTGATAAAAGGAAATCGAAATCTGCTGGTTTTCTTTTAGTAGGCCGTGCATACCTCTGAGATCTGTCACGAAATATTTTCTGCA
TTATAACATTTATTTTTTCGGGTATTAGCAGAATTAGTTCACTCTGCTCGTATGTTTCTTTCCTTTTTTCAGTTGATGTATTCTTAATATAAATATTAATATACAAAGGAAAATTCTTTTCGTAC