sp|Q9LXB4|Y5620_ARATH ----> Putative RNA methyltransferase At5g10620
Intron 1 GTACAGTTGT ... ATCATCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.09 | 5 | 0 | 1 |
| A2 | 20 | 2 | 1 | 0 |
| A3 | 33.33 | 7 | 6 | 1 |
| A4 | 26.32 | 7 | 2 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 16.67 | 15 | 3 | 3 |
| A7 | 14.29 | 12 | 1 | 3 |
| A8 | 11.11 | 8 | 2 | 0 |
| A9 | 14.29 | 12 | 3 | 1 |
| A10 | 18.92 | 15 | 4 | 3 |
>TRINITY_DN29831_c0_g1_i2 from sample A9 / Example spliced isoformTTAAGGGATAAACACAAGGTCGTCAATTGGAAGCTCATGATTTTTGAATCGATTGAGAATAAACTCCATTAAACATTTCTTCTTATGTCTGCCTCATCATCACGGGCATGCATTCAGATAAAATGAACCTGTAATAGTGAGAATCACGCGCGTAGTTCACAGCTTCAAAATAAATGGCGGTTTTTGTGTCGGCAAACTCG
ATACCAGGGTTCAGTCCCTATGCCGCCAAAAGAAATTCAAGCTCCGCTCATTCTGGCCGTTTTAAAGACTCCTTTCTTGGTGAGGCGAATTCGAAATCCCTTGCTCGATCCGTGAGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCT
TCGACGATACTGTAGTGTTGAGTATATACAAGTTAGATCAAATCCAAAGAAAACCAGTGACGTGAAGGCACAAATTGAAGGAGAAGATATCAAAGCTATGCAGCATATTATGCCAAAAGATTGGGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACTTCTGAGCAGCTGGCTAATTTAATAGGGGACACAGGAACAA
CAGGGGCTTCAGCTATTGTATTTTGCATAGGAGGCCCTTATGGTCATGGCCAGCAACTGAGGATGCGTGCTGATATCACTATACGACTTTCCTCCATGGTTTTAAATCATCAGATTGCGTTCATTGTGCTGGTTGAGCAATTATACAGAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTG
GCTCATTTTACATTTTTCGTTCGACTTTTATGTTGTAGAATATTTGTAGTATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATTACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGAT
TTCACCTGCTATAAACTTTTTTCTTGCCCTATCGTGTTGTGATTCTTAATGTTGTTGGATCTGGATTGCAATGAATCTATACTGCATTACGAATGG
>TRINITY_DN29831_c0_g1_i1 from sample A9 / Example unspliced isoform:AGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCTTCGACGATACTGTAGTGTTGAGTATATACAAGTTAGATCAAATCCAAAGAAAACCAGTGACGTGAAGGCACAAATTGAAGGAGAAGATATCAAAGCTATGCAGCATATTATGCC
AAAAGATTGGgtacagttgtagagcttctaagccattgaggtgaaaaagttcattatgttctgaattttgaaattcaatcaatcaccattgttttagatgcaagattatgctgtttgaaactttgaatacatttatatacagtgttattgaggaggggatggcagattattctccattattatgatttgaaaggagtttt
tatctttcaatgcagtatgttgtggacttggtattggaggttcaggttggtacgtgttgacattagacgatattcactgatttttaatttaaatcatcacagGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACTTCTGAGCAGCTGGCTAATTTAATAGGGGACACAGGAACAACAGGGGCTTCAGCTATTGTATT
TTGCATAGGAGGCCCTTATGGTCATGGCCAGCAACTGAGGATGCGTGCTGATATCACTATACGACTTTCCTCCATGGTTTTAAATCATCAGATTGCGTTCATTGTGCTGGTTGAGCAATTATACAGAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTGGCTCATTTTACATTTTTCGTTC
GACTTTTATGTTGTAGAATATTTGTAGTATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATTACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGATTTCACCTGCTATAAACTTTTTT
CTTGCCCTATCGTGTTGTGATTCTTAATGTTGTTGGATCTGGATTGCAATGAATCTATACTGCATTACGAATGG
Intron 2 GTACAGTTGT ... AGCCATTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 5 | 0 | 0 |
| A2 | 33.33 | 2 | 1 | 1 |
| A3 | 30 | 7 | 6 | 0 |
| A4 | 48.15 | 7 | 6 | 7 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 21.05 | 15 | 5 | 3 |
| A7 | 17.24 | 12 | 1 | 4 |
| A8 | 23.81 | 8 | 3 | 2 |
| A9 | 29.41 | 12 | 6 | 4 |
| A10 | 26.83 | 15 | 6 | 5 |
>TRINITY_DN30724_c0_g1_i2 from sample A6 / Example spliced isoformGATTTTTGAATCGATTGAGAATAAACTCCATTAAACATTTCTTCTTATGTCTGCCTCATCATCACGGGCATGCATTCAGATAAAATGAACCTGTAATAGTGAGAATCACGCGCGTAGTTCACAGCTTCAAAATAAATGGCGGTTTTTGTGTCGGCAAACTCGATACCAGGGTTCAGTCCCTATGCCGCCAAAAGAAATTC
AAGCTCCGCTCATTCTGGCCGTTTTAAAGACTCCTTTCTTGGTGAGGCGAATTCGAAATCCCTTGCTCGATCCGTGAGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCTTCGACGATACTGTAGTGTTGAGTATATACAAGTTAGAT
CAAATCCAAAGAAAACCAGTGACGTGAAGGCACAAATTGAAGGAGAAGATATCAAAGCTATGCAGCATATTATGCCAAAAGATTGGGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACTTCTGAGCAGCTGGCTAATTTAATAGGGGACACAGGAACAACAGGGGCTTCAGCTATTGTATTTTGCATAGGAGGCCCT
TATGGTCATGGCCAGCAACTGAGGATGCGTGCTGATATCACTATACGACTTTCCTCCATGGTTTTAAATCATCAGATTGCGTTCATTGTGCTGGTTGAGCAATTATACAGAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTGGCTCATTTTACATTTTTCGTTCGACTTTTATGTTGTAG
AATATTTGTAGTATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATTACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGATTTCACCTGCTATAAACTTTTTTCTTGCCCTATCGTGTT
GTGATTCTTAATGTTGTTGGATCTGGATTGCAATGAATCTATACTGCCG
>TRINITY_DN30724_c0_g1_i3 from sample A6 / Example unspliced isoform:GATTTTTGAATCGATTGAGAATAAACTCCATTAAACATTTCTTCTTATGTCTGCCTCATCATCACGGGCATGCATTCAGATAAAATGAACCTGTAATAGTGAGAATCACGCGCGTAGTTCACAGCTTCAAAATAAATGGCGGTTTTTGTGTCGGCAAACTCGATACCAGGGTTCAGTCCCTATGCCGCCAAAAGAAATTC
AAGCTCCGCTCATTCTGGCCGTTTTAAAGACTCCTTTCTTGAGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCTTCGACGATACTGTAGTGTTGAGTATATACAAGTTAGATCAAATCCAAAGAAAACCAGTGACGTGAAGGCACAA
ATTGAAGGAGAAGATATCAAAGCTATGCAGCATATTATGCCAAAAGATTGGgtacagttgtagagcttctaagccattgagGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACTTCTGAGCAGCTGGCTAATTTAATAGGGGACACAGGAACAACAGGGGCTTCAGCTATTGTATTTTGCATAGGAGGCCCTTATGG
TCATGGCCAGCAACTGAGGATGCGTGCTGATATCACTATACGACTTTCCTCCATGGTTTTAAATCATCAGATTGCGTTCATTGTGCTGGTTGAGCAATTATACAGAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTGGCTCATTTTACATTTTTCGTTCGACTTTTATGTTGTAGAATAT
TTGTAGTATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATTACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGATTTCACCTGCTATAAACTTTTTTCTTGCCCTATCGTGTTGTGAT
TCTTAATGTTGTTGGATCTGGATTGCAATGAATCTATACTGCCG
Intron 3 GTTGTTCTTT ... AATTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 3 |
| A2 | 50 | 1 | 1 | 1 |
| A3 | 75 | 1 | 0 | 3 |
| A4 | 100 | 0 | 7 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 60.53 | 15 | 3 | 23 |
| A7 | 95.65 | 1 | 4 | 22 |
| A8 | 68.42 | 6 | 2 | 13 |
| A9 | 68.75 | 5 | 4 | 11 |
| A10 | 75 | 2 | 5 | 6 |
>TRINITY_DN36132_c0_g1_i3 from sample A8 / Example spliced isoformAGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCTTCGACGATACTGTAGTGTTGAGTATATACAAGTTAGATCAAATCCAAAGAAAACCAGTGACGTGAAGGCACAAATTGAAGGAGAAGATATCAAAGCTATGCAGCATATTATGCC
AAAAGATTGGGTACAGTTGTAGAGCTTCTAAGCCATTGAGAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTGGCTCATTTTACATTTTTCGTTCGACTTTTATGTTGTAGAATATTTGTAGTATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATT
ACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGATTTCACCTGCTATAAACTTTTTTCTTGCCCTATCGTGTTGTGATTCTTAATGTTGTTGGATCTGGATTGCAATGAATCTATACTGCATTACGAATGGTACTTGAATCTT
TAGATCTTCTGGTGTATCAAGGC
>TRINITY_DN36132_c0_g1_i5 from sample A8 / Example unspliced isoform:TTCTTGTTCTGCACGGAGAACCAAATTTAGAAGTAGTTGAGGTTTCATTCTGCTGCCATTTGCAGAGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCTTCGACGATACTGTAGTGTTGAGTATATACAAGTTAGATCAAATCCAAAG
AAAACCAGTGACGTGAAGGCACAAATTGAAGGAGAAGATATCAAAGCTATGCAGCATATTATGCCAAAAGATTGGGTACAGTTGTAGAGCTTCTAAGCCATTGAGgttgttcttttagatgaaaatgggaaagatattacttctgagcagctggctaatttaataggggacacaggaacaacaggggcttcagctattgt
attttgcataggaggcccttatggtcatggccagcaactgaggatgcgtgctgatatcactatacgactttcctccatggttttaaatcatcagattgcgttcattgtgctggttgagcaattatacagAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTGGCTCATTTTACATTTTTCG
TTCGACTTTTATGTTGTAGAATATTTGTAGTATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATTACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGATTTCACCTGCTATAAACTTT
TTTCTTGCCCTATCGTGTTGTGATTCTTAATGTTGTTGGATCTGGATTGCAATGAATCTATACTGCATTACGAATGGTACTTGAATCTTTAGATCTTCTGGTGTATCAAGGC
Intron 4 GTGAAAAAGT ... ATCATCACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 1 |
| A2 | 0 | 1 | 1 | 0 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 30 | 7 | 0 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 50 | 3 | 0 | 3 |
| A7 | 42.86 | 4 | 0 | 3 |
| A8 | 0 | 2 | 1 | 0 |
| A9 | 20 | 4 | 0 | 1 |
| A10 | 37.5 | 5 | 0 | 3 |
>TRINITY_DN29831_c0_g1_i4 from sample A9 / Example spliced isoformGTGAGGCGAATTCGAAATCCCTTGCTCGATCCGTGAGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCTTCGACGATACTGTAGTGTTGAGTATATACAAGTTAGATCAAATCCAAAGAAAACCAGTGACGTGAAGGCACAAATTGAA
GGAGAAGATATCAAAGCTATGCAGCATATTATGCCAAAAGATTGGGTACAGTTGTAGAGCTTCTAAGCCATTGAGGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACTTCTGAGCAGCTGGCTAATTTAATAGGGGACACAGGAACAACAGGGGCTTCAGCTATTGTATTTTGCATAGGAGGCCCTTATGGTCATGG
CCAGCAACTGAGGATGCGTGCTGATATCACTATACGACTTTCCTCCATGGTTTTAAATCATCAGATTGCGTTCATTGTGCTGGTTGAGCAATTATACAGAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTGGCTCATTTTACATTTTTCGTTCGACTTTTATGTTGTAGAATATTTGTAG
TATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATTACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGATTTCACCTGCTATAAACTTTTTTCTTGCCCTATCGTGTTGTGATTCTTAA
TGTTGTTGGATCTGGATTGCAATGAATCTATACTGCATTACGAATGG
>TRINITY_DN29831_c0_g1_i1 from sample A9 / Example unspliced isoform:AGGGTGCTTCCTTTCAAATTGCTGACGGTTGGGAAAAACAAATCTACTGGTGTGCAAATGGTGGTTCAAGAGTATGTTGAAAAGCTTCGACGATACTGTAGTGTTGAGTATATACAAGTTAGATCAAATCCAAAGAAAACCAGTGACGTGAAGGCACAAATTGAAGGAGAAGATATCAAAGCTATGCAGCATATTATGCC
AAAAGATTGGGTACAGTTGTAGAGCTTCTAAGCCATTGAGgtgaaaaagttcattatgttctgaattttgaaattcaatcaatcaccattgttttagatgcaagattatgctgtttgaaactttgaatacatttatatacagtgttattgaggaggggatggcagattattctccattattatgatttgaaaggagtttt
tatctttcaatgcagtatgttgtggacttggtattggaggttcaggttggtacgtgttgacattagacgatattcactgatttttaatttaaatcatcacagGTTGTTCTTTTAGATGAAAATGGGAAAGATATTACTTCTGAGCAGCTGGCTAATTTAATAGGGGACACAGGAACAACAGGGGCTTCAGCTATTGTATT
TTGCATAGGAGGCCCTTATGGTCATGGCCAGCAACTGAGGATGCGTGCTGATATCACTATACGACTTTCCTCCATGGTTTTAAATCATCAGATTGCGTTCATTGTGCTGGTTGAGCAATTATACAGAGCATGGACAATCCTTAAGGGACAGAAGTACCATCATCAGTAGGTCTGGCTGGCTCATTTTACATTTTTCGTTC
GACTTTTATGTTGTAGAATATTTGTAGTATTATTTTCCTCTGATATAAATTGTCTTATAAATTTGGAACTGCTATGTTGTTATATTACCTTAGCTAGAAGGTAAATAGTCAATACAAAAAGTTATTTCCTTTGTGGTCGAGGAAGATATGAGCATGTCAAAACCAATAATTTCTTGATTTCACCTGCTATAAACTTTTTT
CTTGCCCTATCGTGTTGTGATTCTTAATGTTGTTGGATCTGGATTGCAATGAATCTATACTGCATTACGAATGG