sp|Q9SXZ2|FT_ARATH ----> Protein FLOWERING LOCUS T

Intron 1 GTATCATGGG ... GCAATATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	32.34	376.7	45.5	180
A2	26.06	366.2	43.8	129
A3	28.73	452	68.3	182
A4	34.79	271.9	40.1	145
A5	32.19	194	31.8	92
A6	33.05	3777.9	420.5	1864
A7	34.95	3594.7	509.5	1930
A8	33.62	3766.9	497.5	1907
A9	33.03	3858.9	416.6	1901.9
A10	35.61	3202.5	488	1770

>TRINITY_DN118870_c1_g3_i2 from sample A1 / Example spliced isoform

CGGGATCTTCTGCACAGAATGCAGGTGGTGAGGCAGCGGCTTACAGAAGCGGGAATTATCGGAGGCATTGTCGATGATTTCTATCCTCTATTTCAACTTTATGTATTCTACGGCGATGAACGAATAAGCCTCGGTGATCAACTCTCGCCTGCTCAAGTCCAACACAGACCTCGTCATTTTCGACATCGTTACGATGCTGC
TCATCTCGAGTTCAGCGAATTCTTGAGGAACCCCACATTAACAGCAATGGTTATGACGGATCTTGATCCTGCTGGCGGCGAGTATTTGCACTGGATATTTATAAATTGTATCTCCACCCAACAATTTATAACAGAGACGGTATGGAAGGAGCTGATTCCGTATGAAGCTCCAAGGGAAACACTCAGTGGTAGCCGCAAGA
TAGTTTTCACACTATTCAAATGGGATCATTCTGACCGCATTATCTATACACCCGAGTCGCGCAACAATTTCTCTACGAGATATTTCTCGATCATTAATGCTCTTGGAAATCCGCTGTCTTCTGCTTTCTTCTTTCTTTAGAATCATCGATCCGATTGAGAATGGTTAGAAAAAAATTACTCCCATTTAAGCGCCATGTAC
GTTGAGTACCGTTTGAATATCTGTGAACTGGCTGCACGTTTTACGACAAAAACCAAAATGGAATTGTCACTGCCATGAAAGCCTTAGACGGGTTTTATTATCATTTCAATAGATTTTTAAAGTTCTAGCCAGGAGGTTGTGAAGGTTTCCAGAGTTTCTTAATATAATTCATTTCTTCAAAAAAAA

>TRINITY_DN118870_c1_g3_i1 from sample A1 / Example unspliced isoform:

CGGGATCTTCTGCACAGAATGCAGGTGGTGAGGCAGCGGCTTACAGAAGCGGGAATTATCGGAGGCATTGTCGATGATTTCTATCCTCTATTTCAACTTTATGTATTCTACGGCGATGAACGAATAAGCCTCGGTGATCAACTCTCGCCTGCTCAAGTCCAACACAGACCTCGTCATTTTCGACATCGTTACGATGCTGC
TCATCTCGAGTTCAGCGAATTCTTGAGGAACCCCACCTTAACAGCAATGGTTATGACGGATCTTGATCCTGCTGGCGGCGAGTATTTGCACTGGATATTTATAAATTGTATCTCCACCCAACAATTTATAACAGgtatcatgggtttgtttattattttgttgaggtagaaatggatcgatcgaatgcgttccgtaatgt
taaccttggtggatgttcgtttctttgcgctgcaatattagAGACGGTATGGAAGGAGCTGATTCCGTATGAAGCTCCAAGGGAAACACTCAGTGGTAGCCGCAAGATAGTTTTCACACTATTCAAATGGGATCATTCTGACCGCATTATCTATACACCCGAGTCGCGCAACAATTTCTCTACGAGATATTTCTCGATCA
TTAATGCTCTTGGAAATCCGCTGTCTTCTGCTTTCTTCTTTCTTTAGAATCATCGATCCGATTGAGAATGGTTAGAAAAAAATTACTCCCATTTAAGCGCCATGTACGTTGAGTACCGTTTGAATATCTGTGAACTGGCTGCACGTTTTACGACAAAAACCAAAATGGAATTGTCACTGCCATGAAAGCCTTAGACGTGT
TTATTATCATTTCAATAGATTTTTAAAGTTCTAGCCAGGAGGTTGTGAAGGTTTCCAGAGTTTCTTAATATAATTCATTTCTTCAAAAAAAA

Intron 2 GCAAGTTATT ... CCATAATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.81	441.5	115	4
A2	22.37	360.5	103	3
A3	23.35	536.5	163	4
A4	21.24	298.5	80	4
A5	22.94	229	68	3
A6	23.06	3655.5	1088	11
A7	22.83	3927.5	1155	12
A8	22.83	3644	1072	16
A9	22.11	4133.5	1167	12
A10	22.23	3248.5	925	10

>TRINITY_DN108527_c1_g1_i3 from sample A4 / Example spliced isoform

CTCCATCATTTCCTTCTTCTTAATTCGGGATCTTGTGCTTTATTTCATTCTTCTTGATTCGGGATCTTCTGCACAGAATGCAGGTGGTGAGGCAGCGGCTTACAGAAGCGGGAATTATCGGAGGCATTGTCGATGATTTCTATCCTCTATTTCAACTTTATGTATTCTACGGCGATGAACGAATAAGCCTCGGTGATCAA
CTCTCGCCTGCTCAAGTCCAACACAGACCTCGTCATTTTCGACATCGTTACGATGCTGCTCATCTCGAGTTCAGCGAATTCTTGAGGAACCCCACATTAACAGCAATGGTTATGACGGATCTTGATCCTGCTGGCGGCGAGTATTTGCACTGGATATTTATAAATTGTATCTCCACCCAACAATTTATAACAGGTATCAT
GGGTTTGTTTATTATTTTGTTGAGGTAGAAATGGATCGATCGAATGCGTTCCGTAATGTTAACCTTGGTGGATGTTCGTTTCTTTGCGCTGCAATATTAGAGACGGTATGGAAGGAGCTGATTCCGTATGAAGCTCCAAGGGAAACACTCAGTGGTAGCCGCAAGATAGTTTTCACACTATTCAAATGGGATCATTCTGA
CCGCATTATCTATACACCCGAGTCGCGCAACAATTTCTCTACGAGATATTTCTCGATCATTAATGCTCTTGGAAATCCGCTGTCTTCTGCTTTCTTCTTTCTTTAGAATCATCGATCCGATTGAGAATGGTTAGAAAAAAATTACTCCCATTTAAGCGCCATGTACGTTGAGTACCGTTTGAATATCTGTGAACTGGCTG
CACGTTTTACGACAAAAACCAAAATGGAATTGTCACTGCCATGAAAGCCTTAGACGGGTTTTATTATCATTTCAATAGATTTTTAAAGTTCTAGCCAGGAGGTTGTGAAGGTTTCCAGAGTTTCTTAATATAATTCATTTCTTCAGCAATGTGTTATGACACTGTGTTTAGTGTTATAATTTTACTTACGTTGAATGCCG
TTTGAATATCTGTGACAAACCAGAATAGTATTTTTACAGACATGAAAGTCTCAGCCGTGCTGAAAGTTTTGATCGTTTATTAATAAAATTATTGCACATATACATGTTACATTTAACACTGTATTTAACGTTATAATTTTATTTAA

>TRINITY_DN108527_c1_g1_i7 from sample A4 / Example unspliced isoform:

CTCCATCATTTCCTTCTTCTTAATTCGGGATCTTGTGCTTTATTTCATTCTTCTTGATTCGGGATCTTCTGCACAGAATGCAGGTGGTGAGGCAGCGGCTTACAGAAGCGGGAATTATCGGAGGCATTGTCGATGATTTCTATCCTCTATTTCAACTTTATGTATTCTACGGCGATGAACGAATAAGCCTCGGTGATCAA
CTCTCGCCTGCTCAAGTCCAACACAGACCTCGTCATTTTCGACATCGTTACGATGCTGCTCATCTCGAGTTCAGCGAATTCTTGAGGAACCCCACATTAACAGCAATGgcaagttatttctccattattttcttggatatttttttaaaatatatttgctcaaattgagattcatactattaactctttcttgccatttc
tccactattttcttggataattttaataaatatatttgctcaaattgcaattcatgatattaaccctttctgaaatccataattagGTTATGACGGATCTTGATCCTGCTGGCGGCGAGTATTTGCACTGGTATGCTATAAACTTCCTGAAGTTACATAAAATTATTGATTGTGCAGTTTATCTGTGAATGCATTAAATA
ACAATATTCATCGATACATTGTGCAGGTTATCTGTGAATCCCAATGCCCATCTAGAATTTCTAGGGCGGATGC

Intron 3 GTATGCTATA ... CATTGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25.72	114.5	4	12
A2	30.9	122.5	3	18
A3	32.2	140.5	1	26
A4	26.99	79	1	10
A5	30.09	59	1	12
A6	27.7	1065.5	21.5	115
A7	28.09	1025	25.5	160
A8	26.19	1109	28.5	139
A9	26.96	1058	16.5	107
A10	29.3	887	18	170

>TRINITY_DN44027_c0_g3_i1 from sample A9 / Example spliced isoform

CTGGCGGCGAGTATTTGCACTGGATATTTATAAATTGTATCTCCACCCAACAATTTATAACAGGTATCATGGGTTTGTTTATTATTTTGTTGAGGTAGAAATGGATCGATCGAATGCGTTCCGTAATGTTAACCTTGGTGGATGTTCGTTTCTTTGCGCTGCAATATTAGAGACGGTATGGAAGGAGCTGATTCCGTATG
AAGCTCCAAGGGAAACACTCAGTGGTAGCCGCAAGATAGTTTTCACACTATTCAAATGGGATCATTCTGACCGCATTATCTATACACCCGAGTCGCGCAACAATTTCTCTACGAGATATTTCTCGATCATTAATGCTCTTGGAAATCCGCTGTCTTCTGCTTTCTTCTTTCTTTAGAATCATCGATCCGATTGAGAATGG
TTAGAAAAAAATTACTCCCATTTAAGCGCCATGTACGTTGAGTACCGTTTGAATATCTGTGAACTGGCTGCACGTTTTACGACAAAAACCAAAATGGAATTGTCACTGCCATGAAAGCCTTAGACGGGTTTTATTATCATTTCAATAGATTTTTAAAGTTCTAGCCAGGAGGTTGTGAAGGTTTCCAGAGTTTCTTAATA
TAATTCATTTCTTCAGCAATGTGTTATGACACTGTGTTTAGTGTTATAATTTTACTTACGTTGAATGCCGTTTGAATATCTGTGACAAACCAGAATAGTATTTTTACAGACATGAAAGTCTCAGCCGTGCTGAAAGTTTTGATCGTTTATTAATAAAATTATTGCACATATACATGTTACATTTAAAAAAA

>TRINITY_DN44027_c0_g3_i3 from sample A9 / Example unspliced isoform:

GTAACATCGGTAAGCTTAAATCATATTTCGCCATTATTTTTCCAACGAATATTTTTTAATATATTGGATCAAATCGAAATTCATATTATTAGCCCTTTCTTAAATCCATAATTAGGTTATGACGGATCTTGATCCTGCTGGCGGCGAGTATTTGCACTGgtatgctataaacttcttgaagtcgcatcaattaattattg
attgtatagcaccggaatgcattaaataacaatattcatcggtaattaattattgattgtatagcactggaatccattaaataacaatattcatcgctacattgtgcagGATATTTATAAATTGTATCTCCACCCAACAATTTATAACAGGTATCATGGGTTTGTTTATTATTTTGTTGAGGTAGAAATGGATCGATCGA
ATGCGTTCCGTAATGTTAACCTTGGTGGATGTTCGTTTCTTTGCGCTGCAATATTAGAGACGGTATGGAAGGAGCTGATTCCGTATGAAGCTCCAAGGGAAACACTCAGTGGTAGCCGCAAGATAGTTTTCACACTATTCAAATGGGATCATTCTGACCGCATTATCTATACACCCGAGTCGCGCAACAATTTCTCTACG
AGATATTTCTCGATCATTAATGCTCTTGGAAATCCGCTGTCTTCTGCTTTCTTCTTTCTTTAGAATCATCGATCCGATTGAGAATGGTTAGAAAAAAATTACTCCCATTTAAGCGCCATGTACGTTGAGTACCGTTTGAATATCTGTGAACTGGCTGCACGTTTTACGACAAAAACCAAAATGGAATTGTCACTGCCATG
AAAGCCTTAGACGGGTTTTATTATCATTTCAATAGATTTTTAAAGTTCTAGCCAGGAGGTTGTGAAGGTTTCCAGAGTTTCTTAATATAATTCATTTCTTCAGCAATGTGTTATGACACTGTGTTTAGTGTTATAATTTTACTTACGTTGAATGCCGTTTGAATATCTGTGACAAACCAGAATAGTATTTTTACAGACAT
GAAAGTCTCAGCCGTGCTGAAAGTTTTGATCGTTTATTAATAAAATTATTGCACATATACATGTTACATTTAAAAAAA