sp|A9TWD9|GATB_PHYPA ----> Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial
Intron 1 GTTTGAAAAA ... TACTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.5 | 66 | 8.5 | 18.5 |
| A2 | 15.52 | 60 | 13 | 6.5 |
| A3 | 18.59 | 62 | 17 | 4.5 |
| A4 | 14.12 | 30 | 5.5 | 5.5 |
| A5 | 21.14 | 18 | 5 | 5 |
| A6 | 12.79 | 32 | 5.5 | 4 |
| A7 | 16.64 | 139 | 33.5 | 17.5 |
| A8 | 10.63 | 100 | 13.5 | 13 |
| A9 | 12.21 | 99 | 16 | 12 |
| A10 | 13.26 | 133 | 24 | 15.5 |
>TRINITY_DN107732_c0_g1_i4 from sample A2 / Example spliced isoformGAAGAAAGCATGGCTTCCATCCGCTGTTGCCTCAGAGGAGTCACAGCGTCTACCGCAACAACTTCTTTTGTCCGCTCATTCAAAGCTGATATTATAAGACATAAAGCATTCCAATCCAGAAATCTTTATATTCTCTACAGGCATTTGAGCACCCACAAATCTATAAAAGGCAGGGAGTGCAGAGCCCAAGTGAATGGTCA
GGACTACGAAGCAGTGATAGGAATAGAGACCCACGTGCAACTCTCGACCCTCACTAAGGCATTCTGCAGCTGCCCATCTAAGTATGGCTCTCACCCCAACAGCAATGTGTGTCCAATATGCATGGGGTTGCCTGGTTGTTTGCCAGTGCTTAACGAGAGAGTGGTTGAATCCGCTGTGAAGTTAGGAGTCGCATTGCACT
GCCAATTGTCATTAAAATCCAAGTTCGATCGCAAGCAGTACTTTTATCCCGACCTTCCCAAAGGATACCAGATTTCACAACATGACATTCCTATAGCTAGAAATGGGTTCATAGATATCGATATTCCGATGGAGTTTGGGGGTGGGCACCGCCGTTTTTGTATAACCAGAGTGCACATGGAGGAGGACGCTGGAAAATTG
ATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTGTAAGCAATGGTAACATGCAAGAAGGGTCACTGCG
ATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACTCTCCACCAGGAAGGTCAAGGTGATAAGATTGTCCAAGAAACTAGACTTTGGGAAGAGGAAAGTCAGCGTA
CAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTATGCAAGATGTCATCATATTAGCAAATGACAGTGAT
GTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAGATGGAACTATCAGTGGAAAAATTGGCAAAGAGAT
ACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAGGGTTTCTTTGTTGGTCAGGTATGCATTTTTATCC
TGATTCTCAAACCTTTAGGTTTGTTTTTTTCTTCAGTCAAATATTTCTTTGTTAAGTCCTCTGCAACTGTAATCCTTTTAGTGACTATAAAGGTATTTTTGATAAAGCCTGTCATGAGAGCTCTTTGAGTAGGATTTTTCTTCTTAACTTTAATGGTGTCTTATGAGAAGCATATCTTAAAGATGACAAAGCAAAGGGAA
AATTAGCC
>TRINITY_DN107732_c0_g1_i5 from sample A2 / Example unspliced isoform:GACTTTGGGAAGAGGAAAGTCAGgtttgaaaaagcattggtagaagcttgattttgaatgtttttattgaagctacaacatctttgggaaagtttgacatgtatatcatctctgtctttctggaatatgtatatcatctctcttatttaatttcatgctttgtctccaatgccactacatgtctaaaagattgtcttctg
tctctgtacttgtcagCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTATGCAAGATGTCATCA
TATTAGCAAATGACAGTGATGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAGATGGAACTATCAGT
GGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAGGGTTTCTTTGTTGG
TCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAAGATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTGTATCCTTCAACAGTTTTGAGTGACAAA
Intron 2 GTGATAAGAT ... TACTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.11 | 53 | 37 | 3 |
| A2 | 65.31 | 17 | 32 | 1 |
| A3 | 69.7 | 20 | 46 | 0 |
| A4 | 56.76 | 16 | 21 | 0 |
| A5 | 42.31 | 15 | 11 | 1 |
| A6 | 58.62 | 12 | 17 | 0 |
| A7 | 61.11 | 77 | 121 | 1 |
| A8 | 56.07 | 47 | 60 | 0 |
| A9 | 58.27 | 58 | 81 | 0 |
| A10 | 63.83 | 51 | 90 | 0 |
>TRINITY_DN95674_c0_g1_i7 from sample A5 / Example spliced isoformGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTGTAAGCAATGGTAACATGC
AAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACTCTCCACCAGGAAGGTCAAGCGTACAATTACTATGCGGGTCAAAGAGGGACTTGC
TGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTATGCAAGATGTCATCATATTAGCAAATGACAGTGATGTGGCAGCTTTTTTCGATGCAGTTCTGGAAA
AGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAGATGGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACT
GTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAGGGTTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAA
GATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTGTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGAAAATTGAAGAAATTATTGCAATAACTTTGTAATTGATTTGTCTTCATTTCTCTTCATAGAAAGATCTCGAAGATGTGT
>TRINITY_DN95674_c0_g1_i3 from sample A5 / Example unspliced isoform:GGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTGTAAGCAATGGTAACATGC
AAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACTCTCCACCAGGAAGGTCAAGgtgataagattgtccaagaaactagactttgggaa
gaggaaagtcaggtttgaaaaagcattggtagaagcttgattttgaatgtttttattgaagctacaacatctttgggaaagtttgacatgtatatcatctctgtctttctggaatatgtatatcatctctcttatttaatttcatgctttgtctccaatgccactacatgtctaaaagattgtcttctgtctctgtactt
gtcagCGTACAATTACTATGCGGGCC
Intron 3 GTGATAAGAT ... GGAAAGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.71 | 53 | 57 | 66 |
| A2 | 77.03 | 17 | 54 | 60 |
| A3 | 76.47 | 20 | 68 | 62 |
| A4 | 65.22 | 16 | 30 | 30 |
| A5 | 53.85 | 15 | 17 | 18 |
| A6 | 71.43 | 12 | 28 | 32 |
| A7 | 65.93 | 77 | 159 | 139 |
| A8 | 68.03 | 47 | 100 | 100 |
| A9 | 65.58 | 58 | 122 | 99 |
| A10 | 72.28 | 51 | 133 | 133 |
>TRINITY_DN95674_c0_g1_i7 from sample A5 / Example spliced isoformGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTGTAAGCAATGGTAACATGC
AAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACTCTCCACCAGGAAGGTCAAGCGTACAATTACTATGCGGGTCAAAGAGGGACTTGC
TGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTATGCAAGATGTCATCATATTAGCAAATGACAGTGATGTGGCAGCTTTTTTCGATGCAGTTCTGGAAA
AGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAGATGGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACT
GTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAGGGTTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAA
GATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTGTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGAAAATTGAAGAAATTATTGCAATAACTTTGTAATTGATTTGTCTTCATTTCTCTTCATAGAAAGATCTCGAAGATGTGT
>TRINITY_DN95674_c0_g1_i6 from sample A5 / Example unspliced isoform:GGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTGTAAGCAATGGTAACATGC
AAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACTCTCCACCAGGAAGGTCAAGgtgataagattgtccaagaaactagactttgggaa
gaggaaagtcagCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTATGCAAGATGTCATCATATT
AGCAAATGACAGTGATGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAGATGGAACTATCAGTGGAA
AAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACTCTCCACCAGGAAGGTCAAG
Intron 4 GTATGCAAGA ... TTTGTCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.84 | 22 | 28 | 14 |
| A2 | 50 | 11 | 15 | 7 |
| A3 | 57.89 | 12 | 30 | 3 |
| A4 | 55.56 | 10 | 17 | 8 |
| A5 | 56.52 | 5 | 9 | 4 |
| A6 | 42.31 | 15 | 15 | 7 |
| A7 | 48.57 | 45 | 64 | 21 |
| A8 | 43.26 | 40 | 43 | 18 |
| A9 | 46.51 | 46 | 60 | 20 |
| A10 | 47.98 | 45 | 63 | 20 |
>TRINITY_DN35183_c0_g1_i2 from sample A9 / Example spliced isoformACTTCCTGAACGATAACTGAAATAAACATGAATAGCGGATAATGAAAAATTTCTTTATGTTCTAGCCAGAGAAGAAAGCATGGCTTCCATCCGCTGTTGCCTCAGAGGAGTCACAGCGTCTACCGCAACAACTTCTTTTGTCCGCTCATTCAAAGCTGATATTATAAGACATAAAGCATTCCAATCCAGAAATCTTTATA
TTCTCTACAGGCATTTGAGCACCCACAAATCTATAAAAGGCAGGGAGTGCAGAGCCCAAGTGAATGGTCAGGACTACGAAGCAGTGATAGGAATAGAGACCCACGTGCAACTCTCGACCCTCACTAAGGCATTCTGCAGCTGCCCATCTAAGTATGGCTCTCACCCCAACAGCAATGTGTGTCCAATATGCATGGGGTTG
CCTGGTTGTTTGCCAGTGCTTAACGAGAGAGTGGTTGAATCCGCTGTGAAGTTAGGAGTCGCATTGCACTGCCAATTGTCATTAAAATCCAAGTTCGATCGCAAGCAGTACTTTTATCCCGACCTTCCCAAAGGATACCAGATTTCACAACATGACATTCCTATAGCTAGAAATGGGTTCATAGATATCGATATTCCGAT
GGAGTTTGGGGGTGGGCACCGCCGTTTTTGTATAACCAGAGTGCACATGGAGGAGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATG
CTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTGTAAGCAATGGTAACATGCAAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACT
CTCCACCAGGAAGGTCAAGGTGATAAGATTGTCCAAGAAACTAGACTTTGGGAAGAGGAAAGTCAGCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGA
AAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAGAT
GGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAGGG
TTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAAGATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTGTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGAAAATTGAAGAAATTATTGC
AATAACTTTGTAATTGATTTGTCTTCATTTCTCTTCATAGAAAGATCTCGAAGATGTGTTCATTATGATAAAATGTTGTCATTACTTTTCTTTTCAGC
>TRINITY_DN35183_c0_g1_i1 from sample A9 / Example unspliced isoform:ACTTCCTGAACGATAACTGAAATAAACATGAATAGCGGATAATGAAAAATTTCTTTATGTTCTAGCCAGAGAAGAAAGCATGGCTTCCATCCGCTGTTGCCTCAGAGGAGTCACAGCGTCTACCGCAACAACTTCTTTTGTCCGCTCATTCAAAGCTGATATTATAAGACATAAAGCATTCCAATCCAGAAATCTTTATA
TTCTCTACAGGCATTTGAGCACCCACAAATCTATAAAAGGCAGGGAGTGCAGAGCCCAAGTGAATGGTCAGGACTACGAAGCAGTGATAGGAATAGAGACCCACGTGCAACTCTCGACCCTCACTAAGGCATTCTGCAGCTGCCCATCTAAGTATGGCTCTCACCCCAACAGCAATGTGTGTCCAATATGCATGGGGTTG
CCTGGTTGTTTGCCAGTGCTTAACGAGAGAGTGGTTGAATCCGCTGTGAAGTTAGGAGTCGCATTGCACTGCCAATTGTCATTAAAATCCAAGTTCGATCGCAAGCAGTACTTTTATCCCGACCTTCCCAAAGGATACCAGATTTCACAACATGACATTCCTATAGCTAGAAATGGGTTCATAGATATCGATATTCCGAT
GGAGTTTGGGGGTGGGCACCGCCGTTTTTGTATAACCAGAGTGCACATGGAGGAGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATG
CTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTGTAAGCAATGGTAACATGCAAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACT
CTCCACCAGGAAGGTCAAGGTGATAAGATTGTCCAAGAAACTAGACTTTGGGAAGAGGAAAGTCAGCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGA
AAAGCGCCGACGTTATGAGAGAATGGGGCTTAgtatgcaagatgtcatcatattagcaaatgacagtgatgtaattgctgaatgatgaatgtagaatgatccatcttgatattcgtgctctaaattcaactgaaagtgacgttctgttgtttgtcttagGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGA
TGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAGATGGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCAT
TGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAGGGTTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAAGATACTATTA
GACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTGTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGAAAATTGAAGAAATTATTGCAATAACTTTGTAATTGATTTGTCTTCATTTCTCTTCATAGAAAGATCTCGAAGATGTGTTCATTATGATAAAA
TGTTGTCATTACTTTTCTTTTCAGC
Intron 5 GTGACTCTCC ... GGAAAGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.95 | 41 | 62 | 66 |
| A2 | 73.25 | 21 | 55 | 60 |
| A3 | 75.69 | 22 | 75 | 62 |
| A4 | 61.54 | 20 | 34 | 30 |
| A5 | 53.85 | 18 | 24 | 18 |
| A6 | 65.52 | 15 | 25 | 32 |
| A7 | 72.53 | 57 | 162 | 139 |
| A8 | 66.56 | 52 | 107 | 100 |
| A9 | 69.02 | 46 | 106 | 99 |
| A10 | 74.71 | 43 | 121 | 133 |
>TRINITY_DN113166_c0_g1_i1 from sample A1 / Example spliced isoformGGATAATGAAAAATTTCTTTATGTTCTAGCCAGAGAAGAAAGCATGGCTTCCATCCGCTGTTGCCTCAGAGGAGTCACAGCGTCTACCGCAACAACTTCTTTTGTCCGCTCATTCAAAGCTGATATTATAAGACATAAAGCATTCCAATCCAGAAATCTTTATATTCTCTACAGGCATTTGAGCACCCACAAATCTATAA
AAGGCAGGGAGTGCAGAGCCCAAGTGAATGGTCAGGACTACGAAGCAGTGATAGGAATAGAGACCCACGTGCAACTCTCGACCCTCACTAAGGCATTCTGCAGCTGCCCATCTAAGTATGGCTCTCACCCCAACAGCAATGTGTGTCCAATATGCATGGGGTTGCCTGGTTGTTTGCCAGTGCTTAACGAGAGAGTGGTT
GAATCCGCTGTGAAGTTAGGAGTCGCATTGCACTGCCAATTGTCATTAAAATCCAAGTTCGATCGCAAGCAGTACTTTTATCCCGACCTTCCCAAAGGATACCAGATTTCACAACATGACATTCCTATAGCTAGAAATGGGTTCATAGATATCGATATTCCGATGGAGTTTGGGGGTGGGCACCGCCGTTTTTGTATAAC
CAGAGTGCACATGGAGGAGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTG
TAAGCAATGGTAACATGCAAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTAC
AGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTATGCAAGATGTCATCATATTAGCAAATGACAGTGATGTAATTGCTGAATGATGAATGTAGAATGATCCATCTTG
ATATTCGTGCTCTAAATTCAACTGAAAGTGACGTTCTGTTGTTTGTCTTAGGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCT
TATAGCCTTAATTAAAGATGGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTG
GTAAGACAAAATTACAGGGTTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAAGATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTTTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGA
AAATTGAAGAAATTATTG
>TRINITY_DN113166_c0_g1_i2 from sample A1 / Example unspliced isoform:GGATAATGAAAAATTTCTTTATGTTCTAGCCAGAGAAGAAAGCATGGCTTCCATCCGCTGTTGCCTCAGAGGAGTCACAGCGTCTACCGCAACAACTTCTTTTGTCCGCTCATTCAAAGCTGATATTATAAGACATAAAGCATTCCAATCCAGAAATCTTTATATTCTCTACAGGCATTTGAGCACCCACAAATCTATAA
AAGGCAGGGAGTGCAGAGCCCAAGTGAATGGTCAGGACTACGAAGCAGTGATAGGAATAGAGACCCACGTGCAACTCTCGACCCTCACTAAGGCATTCTGCAGCTGCCCATCTAAGTATGGCTCTCACCCCAACAGCAATGTGTGTCCAATATGCATGGGGTTGCCTGGTTGTTTGCCAGTGCTTAACGAGAGAGTGGTT
GAATCCGCTGTGAAGTTAGGAGTCGCATTGCACTGCCAATTGTCATTAAAATCCAAGTTCGATCGCAAGCAGTACTTTTATCCCGACCTTCCCAAAGGATACCAGATTTCACAACATGACATTCCTATAGCTAGAAATGGGTTCATAGATATCGATATTCCGATGGAGTTTGGGGGTGGGCACCGCCGTTTTTGTATAAC
CAGAGTGCACATGGAGGAGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTG
TAAGCAATGGTAACATGCAAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGgtgactctccaccaggaaggtcaaggtgataagattgtccaa
gaaactagactttgggaagaggaaagtcagCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTAT
GCAAGATGTCATCATATTAGCAAATGACAGTGATGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAG
ATGGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAG
GGTTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAAGATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTTTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGAAAATTGAAGAAATTATT
G
Intron 6 GTAATTGCTG ... TTTGTCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.44 | 38 | 10 | 13.7 |
| A2 | 17.5 | 33 | 6 | 7 |
| A3 | 7.69 | 36 | 12 | 3 |
| A4 | 23.33 | 24 | 7.3 | 7.3 |
| A5 | 31.65 | 7 | 4 | 3.3 |
| A6 | 23.33 | 23 | 4 | 7 |
| A7 | 16.22 | 105 | 26 | 20.3 |
| A8 | 22.22 | 63 | 12 | 18 |
| A9 | 17.39 | 95 | 26.7 | 20 |
| A10 | 15.87 | 106 | 24 | 20 |
>TRINITY_DN113166_c0_g1_i2 from sample A1 / Example spliced isoformGGATAATGAAAAATTTCTTTATGTTCTAGCCAGAGAAGAAAGCATGGCTTCCATCCGCTGTTGCCTCAGAGGAGTCACAGCGTCTACCGCAACAACTTCTTTTGTCCGCTCATTCAAAGCTGATATTATAAGACATAAAGCATTCCAATCCAGAAATCTTTATATTCTCTACAGGCATTTGAGCACCCACAAATCTATAA
AAGGCAGGGAGTGCAGAGCCCAAGTGAATGGTCAGGACTACGAAGCAGTGATAGGAATAGAGACCCACGTGCAACTCTCGACCCTCACTAAGGCATTCTGCAGCTGCCCATCTAAGTATGGCTCTCACCCCAACAGCAATGTGTGTCCAATATGCATGGGGTTGCCTGGTTGTTTGCCAGTGCTTAACGAGAGAGTGGTT
GAATCCGCTGTGAAGTTAGGAGTCGCATTGCACTGCCAATTGTCATTAAAATCCAAGTTCGATCGCAAGCAGTACTTTTATCCCGACCTTCCCAAAGGATACCAGATTTCACAACATGACATTCCTATAGCTAGAAATGGGTTCATAGATATCGATATTCCGATGGAGTTTGGGGGTGGGCACCGCCGTTTTTGTATAAC
CAGAGTGCACATGGAGGAGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTG
TAAGCAATGGTAACATGCAAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGGTGACTCTCCACCAGGAAGGTCAAGGTGATAAGATTGTCCAA
GAAACTAGACTTTGGGAAGAGGAAAGTCAGCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTACAGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTAT
GCAAGATGTCATCATATTAGCAAATGACAGTGATGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCTTATAGCCTTAATTAAAG
ATGGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTGGTAAGACAAAATTACAG
GGTTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAAGATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTTTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGAAAATTGAAGAAATTATT
G
>TRINITY_DN113166_c0_g1_i1 from sample A1 / Example unspliced isoform:GGATAATGAAAAATTTCTTTATGTTCTAGCCAGAGAAGAAAGCATGGCTTCCATCCGCTGTTGCCTCAGAGGAGTCACAGCGTCTACCGCAACAACTTCTTTTGTCCGCTCATTCAAAGCTGATATTATAAGACATAAAGCATTCCAATCCAGAAATCTTTATATTCTCTACAGGCATTTGAGCACCCACAAATCTATAA
AAGGCAGGGAGTGCAGAGCCCAAGTGAATGGTCAGGACTACGAAGCAGTGATAGGAATAGAGACCCACGTGCAACTCTCGACCCTCACTAAGGCATTCTGCAGCTGCCCATCTAAGTATGGCTCTCACCCCAACAGCAATGTGTGTCCAATATGCATGGGGTTGCCTGGTTGTTTGCCAGTGCTTAACGAGAGAGTGGTT
GAATCCGCTGTGAAGTTAGGAGTCGCATTGCACTGCCAATTGTCATTAAAATCCAAGTTCGATCGCAAGCAGTACTTTTATCCCGACCTTCCCAAAGGATACCAGATTTCACAACATGACATTCCTATAGCTAGAAATGGGTTCATAGATATCGATATTCCGATGGAGTTTGGGGGTGGGCACCGCCGTTTTTGTATAAC
CAGAGTGCACATGGAGGAGGACGCTGGAAAATTGATCCATGCTGGAAATGATCGTCTTTCGGGTTCATTCTACACTCAGGTGGATTTGAACCGGGCTGGTGTGCCTTTGCTGGAGATTGTTTCAGAACCTGATATGAGAAGTGGGGTTGAAGCTGCAGAATATGCTGCGGAATTGCAAAGGCTGGTACGCTATTTGGGTG
TAAGCAATGGTAACATGCAAGAAGGGTCACTGCGATGTGACGTAAATGTGTCTATCCGGCCGAAAGGGGACCTGCCATTTGGAACTAAGGTTGAGATAAAGAACATGAATTCATTCTCTGCAATGCAACGGGCCATTGATTTTGAGATTTCTCGGCAGCGTACAATTACTATGCGGGTCAAAGAGGGACTTGCTGATTAC
AGATACTTTCCAGAACCTGATCTTCCGGAAGTTATCTTAACACAGGATTATATTGATGCTCTTAAAGCTAGTCTGCCAGAGCTCCCAGATGAAAAGCGCCGACGTTATGAGAGAATGGGGCTTAGTATGCAAGATGTCATCATATTAGCAAATGACAGTGATgtaattgctgaatgatgaatgtagaatgatccatcttg
atattcgtgctctaaattcaactgaaagtgacgttctgttgtttgtcttagGTGGCAGCTTTTTTCGATGCAGTTCTGGAAAAGGGGGCTGATGCAAAGACATCTGCTAATTGGATAATGGGTGATATAGCAGCATATCTCAAGAGTGAAAAGCTGTCAATATCTGAGATCCAATTAACACCTTTTGAATTGGCAGACCT
TATAGCCTTAATTAAAGATGGAACTATCAGTGGAAAAATTGGCAAAGAGATACTAGTACAACTTCTTGCAAAAGGAGGAACTGTCAAAGCATTGATAGAAGAAAAGGGTCTGGTTCAGATTTCAGATCCAGATGTAATCGAAAGTATGGTGGACAAAATATTAGCAGAGAATCCCAAGCAATTGGAGCAATATCGAGGTG
GTAAGACAAAATTACAGGGTTTCTTTGTTGGTCAGGTCATGAAGGCTTCCAAAGGAAAGGCAAATCCAACATTGTTAAGCAAGATACTATTAGACAAGCTGAATGCAAAACAATGAAATCATATTAGTATTGCATTGTTGAAAGGATTAATGTATTTTTATCCTTCAACAGTTTTGAGTGACAAAAATAAAAAATAATGA
AAATTGAAGAAATTATTG