NA ----> NA

Intron 1 GTAAGGGAAC ... TTTGCTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	73.26	47.6	113.3	145
A2	80.86	30	126.6	124.9
A3	75.97	42.1	139.7	122
A4	84.64	28.7	169.5	144
A5	68.52	29.9	67.6	61
A6	76.42	169.3	497.9	589.9
A7	78.74	176	635.7	655
A8	78.72	96.4	324.4	382.5
A9	78	157.2	529.3	577
A10	76.92	174.2	538.6	610.7

>TRINITY_DN121726_c1_g1_i6 from sample A1 / Example spliced isoform

GCAGGGATGATATTGAAAATATTGACCATTTGCTTTTCCAATGTGTTGAATATCCACAAGAAATGGAGTGGTGATACTTTTGATCGAGCCCTGTTTCTTTGGCTTGCGGAAGACAAGTAGTGGGAAGAACTGCCAATTTTCATTTCTTGGTCTTTATGGAAGCTCAAGAAAGGTGTTGTTTGAGGATGCTACTCGTATTT
TCCACAAGCATGAGGGTGGTGTCTCAGGCGTGGGGATGGTCTTGTTTTTAATTGATAAGAATTTTTTCAATCTGTGGATGGCGTGCGATCTGGGCTGAGAATAGATGTAATTTGTAGGCGATCCTCTTAGAAGGGTGAAAATTCACATCAGGAGGATCCAAGCTATTTTTCAGAGGCTTCAACACTTTCATATCTATCGG
TATTTTAAGTCTTCAACTGATAGCCCGCCGAAAAAATCCCTGTCAGCTCCAGATGGTATTATCTCCTTTGAAGAATGGGACGATTCAG

>TRINITY_DN121726_c1_g1_i3 from sample A1 / Example unspliced isoform:

GCAGGGATGATATTGAAAATATTGACCATTTGCTTTTCCAATGTGTTGAATATCCACAAGAAATGGAGTGGTGATACTTTTGATCGAGCCCTGTTTCTTTGGCTTGCGGAAGACAAGTAGTGGGAAGAACTGCCAATTTTCATTTCTTGGTCTTTATGGAAGCTCAAGAAAGGTGTTGTTTGAGGATGCTACTCGTATTT
TCCACAAGCATGAGGGTGGTGTCTCAGGCGTGGGGATGGTCTTGTTTTTAATTGATAAGAATTTTTTCAATCTGTGGATGGCGTGCGgtaagggaaccaatgcaagaagcgagttgttggcatactttggactgttatttttagctcataagaggaacattgatttgctgcagATCTGGGCTGAGAATAGATGTAATTTG
TAGGCGATCCTCTTAGAAGGGTGAAAATTCACATCAGGAGGATCCAAGCTATTTTTCAGAGGCTTCAACACTTTCATATCTATCGGTATTTTAAGTCTTCAACTGATAGCCCGCCGAAAAAATCCCTGTCAGCTCCAGATGGTATTATCTCCTTTGAAGAATGGGACGATTCAGCCTACAACTATGACTTCCACAGAACC
AACAACATCTGTCTCCTCAGATGATATTAGCTCGCTTATTGTCATATCCGGTGGAAGACAACGAATTTTACATACTTGGTCAATTGCCTAAATGACAGTGGTTGGCAATATAGCTATCGAGTTTATGGCATCACCACCGTCATATTGGCCTTTCTTTTTAAGCTCAAATCCATATATTCTGATGCTTTTTCCAGGAAAAA
GAAAACTTCCAAATCGGTTTATCAAATTATCATTCATTGTTGCAGTGATTGTCATTAAACCATCCCTGTCTACAAGGTCTGCGTGCAAAATGTTTGTCTTTACAGT

Intron 2 GTTAGTCTGG ... TGTGTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.83	34	68	69
A2	56.96	51	79	56
A3	59.26	55	76	84
A4	62.44	37	52	71
A5	68.49	23	46	54
A6	63.09	165	298	266
A7	61.43	221	350	354
A8	63.85	92	131	194
A9	60.31	177	245	293
A10	61.86	185	297	303

>TRINITY_DN44225_c0_g2_i3 from sample A6 / Example spliced isoform

GCAGGGATGATATTGAAAATATTGACCATTTGTTTTTCCAATGTGTTGAATATCCACAAGAAATGGAGTGGTGATACTTTTGATGGAGCCCTGTTTCTTTGGCTTGCGGAAGACAAGTAGTGGGAAGAACTGCCAATTTTCATTTCTTGGTCTTTATGGAAGCTCAAGAAAGGTGTTGTTTGAGGATGCTACTCGTATTT
TCCACAAGCATGAGGGTGGTGTCTCAGGCGGGGGATGGTCTTGTTTTTAAGTGATAAGAATTTTTTCAATCTGTGGATGGCGTGCGGTAAGGGAACCAATGCAAGAAGCGAGTTGTTGGCATACTTTGGACTGTTATTTTTAGCTCATAAGAGGAACATTGATTTGCTGCAGATCTGGGCTGAGAATAGATGTAATTTGT
AGGCGATCCTCTTAGAAGGGTGGAAAATTCACATCAGGAGGATCCAAGCTATTTTTCAGAGGCTTCAACACTTTCATATCTATCGGTATTTTAAGTCTTCAACTGATAGCCCGCCGAAAAAATCCCTGTCAGCTCCAGATGGTATTATCTCCTTTGAAGAATGGGACGATTCAGGTTTGATCTCCTGAGGTTCTATAGTT
TCATGGAACTGAATAAGGTTCTCTGGCTTATTTGTTGTTTTTGTGTTATTACAATATGAATGTTGTCTCCTGTCTTCATGTTGAAACTTTTGTTTGTTCGTCTGTCCCCGATATTAGTTGATGGTCACCAGCTTTTCATTTTGGCTGGTGTTTATAGATGTTGTATAGATCTTTTTTGTAATGTAGTTGAGCAAGAATGT
TGCAGTTTTGTCCGTCTCCTTTGGTAGTGTAGTGGGAAATGATATGTATTGTGCCTTTCTAAGTTTCTATCAATGAACAATACTTTGTATACATTGATTCAAATATTCAATGAACAATACTTTGTATACTTTGATTCAAATATTCAATAACAAGTATAGTAGTTTCTTTTTCCGTGAAAACAAACTAATTCTAGTGGGAA
GAATTATCTAATGAGCCCAT

>TRINITY_DN44225_c0_g2_i2 from sample A6 / Example unspliced isoform:

GCAGGGATGATATTGAAAATATTGACCATTTGTTTTTCCAATGTGTTGAATATCCACAAGAAATGGAGTGGTGATACTTTTGATGGAGCCCTGTTTCTTTGGCTTGCGGAAGACAAGTAGTGGGAAGAACTGCCAATTTTCATTTCTTGGTCTTTATGGAAGCTCAAGAAAGGTGTTGTTTGAGGATGCTACTCGTATTT
TCCACAAGgttagtctggtagccacgaccgctttcctggaaagacagaagataaataagatcaagaaccacatcctccatgagcctcgtgagcctcctgtttttggatgcaacttaccatttggattttttgatggtgtgttgcagCATGAGGGTGGTGTCTCAGGCGGGGGATGGTCTTGTTTTTAAGTGATAAGAATT
TTTTCAATCTGTGGATGGCGTGCGGTAAGGGAACCAATGCAAGAAGCGAGTTGTTGGCATACTTTGGACTGTTATTTTTAGCTCATAAGAGGAACATTGATTTGCTGCAGATCTGGGCTGAGAATAGATGTAATTTGTAGGCGATCCTCTTAGAAGGGTGGAAAATTCACATCAGGAGGATCCAAGCTATTTTTCAGAGG
CTTCAACACTTTCATATCTATCGGTATTTTAAGTCTTCAACTGATAGCCCGCCGAAAAAATCCCTGTCAGCTCCAGATGGTATTATCTCCTTTGAAGAATGGGACGATTCAGGTTTGATCTCCTGAGGTTCTATAGTTTCATGGAACTGAATAAGGTTCTCTGGCTTATTTGTTGTTTTTGTGTTATTACAATATGAATG
TTGTCTCCTGTCTTCATGTTGAAACTTTTGTTTGTTCGTCTGTCCCCGATATTAGTTGATGGTCACCAGCTTTTCATTTTGGCTGGTGTTTATAGATGTTGTATAGATCTTTTTTGTAATGTAGTTGAGCAAGAATGTTGCAGTTTTGTCCGTCTCCTTTGGTAGTGTAGTGGGAAATGATATGTATTGTGCCTTTCTAA
GTTTCTATCAATGAACAATACTTTGTATACATTGATTCAAATATTCAATGAACAATACTTTGTATACTTTGATTCAAATATTCAATAACAAGTATAGTAGTTTCTTTTTCCGTGAAAACAAACTAATTCTAGTGGGAAGAATTATCTAATGAGCCCAT

Intron 3 GTTAGTCTGG ... TGTGTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	68.63	31.8	70	68.5
A2	61.06	43.3	79	54
A3	62.34	49.2	76	85.6
A4	65.24	32.9	52	69.5
A5	71.43	20.2	46	52.4
A6	66.68	141.1	298	260.3
A7	65.49	185.9	350	344
A8	68.26	77.1	131	188.3
A9	63.97	153.2	245	290.5
A10	65.18	160.8	297	296.2

>TRINITY_DN121726_c1_g1_i6 from sample A1 / Example spliced isoform

GCAGGGATGATATTGAAAATATTGACCATTTGCTTTTCCAATGTGTTGAATATCCACAAGAAATGGAGTGGTGATACTTTTGATCGAGCCCTGTTTCTTTGGCTTGCGGAAGACAAGTAGTGGGAAGAACTGCCAATTTTCATTTCTTGGTCTTTATGGAAGCTCAAGAAAGGTGTTGTTTGAGGATGCTACTCGTATTT
TCCACAAGCATGAGGGTGGTGTCTCAGGCGTGGGGATGGTCTTGTTTTTAATTGATAAGAATTTTTTCAATCTGTGGATGGCGTGCGATCTGGGCTGAGAATAGATGTAATTTGTAGGCGATCCTCTTAGAAGGGTGAAAATTCACATCAGGAGGATCCAAGCTATTTTTCAGAGGCTTCAACACTTTCATATCTATCGG
TATTTTAAGTCTTCAACTGATAGCCCGCCGAAAAAATCCCTGTCAGCTCCAGATGGTATTATCTCCTTTGAAGAATGGGACGATTCAG

>TRINITY_DN121726_c1_g1_i4 from sample A1 / Example unspliced isoform:

GCAGGGATGATATTGAAAATATTGACCATTTGCTTTTCCAATGTGTTGAATATCCACAAGAAATGGAGTGGTGATACTTTTGATCGAGCCCTGTTTCTTTGGCTTGCGGAAGACAAGTAGTGGGAAGAACTGCCAATTTTCATTTCTTGGTCTTTATGGAAGCTCAAGAAAGGTGTTGTTTGAGGATGCTACTCGTATTT
TCCACAAGgttagtctggtagccacgaccgctttcctggaaagacagaagataaataagatcaagaaccacatcctccgtgagcctcctgtttttggatgcaacttaccatttggattttttgatggtgtgttgcagCATGAGGGTGGTGTCTCAGGCGTGGGGATGGTCTTGTTTTTAATTGATAAGAATTTTTTCAAT
CTGTGGATGGCGTGCGGTAAGGGAACCAATGCAAGAAGCGAGTTGTTGGCATACTTTGGACTGTTATTTTTAGCTCATAAGAGGAACATTGATTTGCTGCAGATCTGGGCTGAGAATAGATGTAATTTGTAGGCGATCCTCTTAGAAGGGTGAAAATTCACATCAGGAGGATCCAAGCTATTTTTCAGAGGCTTCAACAC
TTTCATATCTATCGGTATTTTAAGTCTTCAACTGATAGCCCGCCGAAAAAATCCCTGTCAGCTCCAGATGGTATTATCTCCTTTGAAGAATGGGACGATTCAGGTTTGATCTCCTGAGGTTCTATATTTTCATGGAACTGAATAAGGCTCTCTGGCTTATTTGTTGTTTTTGTGTTATTACAATATGAATGTTGTCTCCT
GTCTTCATGTTGAAACTTTTGTTTGTTCGTCTGTCCCCGATATTAGTTGATGGTCACCAGCTTTTCATTTTGGCTGGTGTTTATAGATGTTGTATAGATCTTTTTTGTAATGTAGTTGAGCAAGAATGTTGCAGTTTTGTCCGTCTCCTTTGGTAGTGGAGTGGGGAATGATATGTATTGTGCCTTTCTAAGTTTCTATC
AATGAACAATACTTTGTATACTTTGATTCAAATATTCAATGAACAATACTTTGTATACTTTGATTCAAATATTCAATAACAAGTATAGTAGTTTCTTTTTCCGTGAAAACACAAACTAATTCTAGTGGGAAGAATTATCTAATGAGCCGAT