sp|Q6DBG8|ARAD1_ARATH ----> Probable arabinosyltransferase ARAD1
Intron 1 GTACGGCACT ... CATCGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.88 | 30.3 | 53 | 27 |
| A2 | 54.17 | 22 | 36 | 16 |
| A3 | 63.03 | 22 | 57 | 18 |
| A4 | 60.92 | 17 | 50 | 3 |
| A5 | 60.98 | 8 | 19 | 6 |
| A6 | 55.56 | 66 | 119 | 46 |
| A7 | 47.31 | 94.7 | 110 | 60 |
| A8 | 51.58 | 46 | 59 | 39 |
| A9 | 49.7 | 96.7 | 136 | 55 |
| A10 | 61.98 | 50 | 126 | 37 |
>TRINITY_DN113451_c0_g1_i6 from sample A3 / Example spliced isoformGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTC
AGCAGCGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTT
GATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCA
AAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATA
CAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGT
GGCCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTTGTCTATAATT
GGAGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATT
AAAATAACTATTTGAGTTACTTTTGTCATGCAATTCCAGTTTTGTTGGTAAGTAAATATTTGCGTATTGGTCTGCAAGTATCTCCTGGGCTGC
>TRINITY_DN113451_c0_g1_i4 from sample A3 / Example unspliced isoform:GTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTC
AGCAGCgtacggcactaaacacaattgattacaaacaataacgaggaagaaattcatccataactaaatcatttcactgataagggctcatcagtcaggataactgtattggtagatctcatgctttagctaaatcatttcgctgacaagggctcatcagtcaggagaactctattgctagatctcatgctctatatagc
ttcagacccatccatccatgtacattatccattatcaatctcctgctattctttctctgttctctgtgattgaatgtgtaattgatgcatgcttgtaaacagaaaaaaagccatgaaagggaggcagcattttttacagagaagatatgtgtcgtgttttccaatgccatcgaccagggcaggcctagctactattgcat
tgatagctataattatacccattatgctctacttcctgctattttccaaccgaacgaatagtgatactctgcattcatcatcaaattcccaatttaaagcgcatcctcagcattcatttattttatctttggagaaattcttgaaaaccagaggccctcggcagagctcaggatcgtcagacaacttggcatctattgac
ggtaatttgacacagagagctgcagagcgactagacgatgccatgtgggcaagagaacgcctggagctgacggactatcatcgagaagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGA
AGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTG
Intron 2 GTGGCTTTAT ... GTGTCCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.68 | 39 | 30 | 33 |
| A2 | 50.65 | 38 | 39 | 39 |
| A3 | 49.67 | 38 | 37 | 38 |
| A4 | 49.18 | 31 | 30 | 30 |
| A5 | 54.29 | 16 | 20 | 18 |
| A6 | 47.47 | 270 | 232 | 256 |
| A7 | 48.38 | 239 | 214 | 234 |
| A8 | 47.86 | 311 | 263 | 308 |
| A9 | 48.88 | 252 | 234 | 248 |
| A10 | 48.16 | 183 | 169 | 171 |
>TRINITY_DN45748_c0_g1_i7 from sample A7 / Example spliced isoformCGGCCGGAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGC
GGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCT
ATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGA
CCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGA
TCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGTCCGTTCCCTCTCAGAGTTTATGTTTACGACATGCCGTCTAAGTTTACTTTCGATTTGCTTTGGCTCTTCCACGACACGTACCA
TGAGACAGCCAATTTGACTTCAAATGGCAGCCCCGTCCATCGCCTCATTGAGCAGCATTCGATCGATTACTGGCTGTGGGCAGACCTAATTGCTCCGGAAAGTGAGAGACAATTGAAAACTGTTGTCAGGGTGCACCGTCAAGAGGAGGCCGATTTGTTCTACATCCCTTTCTTTACAACTATTAGCTTTTTTCTGCTGG
AGAAACCGAAATGCAAGCAACTTTACAGGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGC
GAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGA
AGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGTTGATGCTAT
ACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCATTCTAATCTCGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGG
TGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGG
TGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAA
AATAACTATTTGAGTTACTTTTGTCATGCA
>TRINITY_DN45748_c0_g1_i1 from sample A7 / Example unspliced isoform:CGGCCGGAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGC
GGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCT
ATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGA
CCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGA
TCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGT
CTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGT
GGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAAT
TGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGgtggctttatttgtgtcctcagTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATT
TTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGC
TACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTT
TTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCA
Intron 3 GTCCGTTCCC ... CATTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.57 | 27 | 21 | 28 |
| A2 | 56.16 | 16 | 17 | 24 |
| A3 | 59.55 | 18 | 33 | 20 |
| A4 | 86.67 | 3 | 25 | 14 |
| A5 | 66.67 | 6 | 15 | 9 |
| A6 | 57.6 | 46 | 75 | 50 |
| A7 | 58.04 | 60 | 98 | 68 |
| A8 | 56.91 | 39 | 60 | 43 |
| A9 | 59.41 | 55 | 91 | 70 |
| A10 | 64.59 | 37 | 77 | 58 |
>TRINITY_DN42988_c0_g1_i7 from sample A8 / Example spliced isoformTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTT
TCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATAACGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTGTATTGCTAGATCTCATGCTCTATATA
GCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGACCAGGGCAGGCCCAGCTACTATTGC
ATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGATCGTCAGACAACTTGGCATCTATTG
ACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCAT
GAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTG
GAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTA
GTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCATTCTAATCTCGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCC
ACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGG
TTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTTGTCTATAATTGGAGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTT
ATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCAATTCCAGTTTTGTTGGTAAGTAAATATTTGCGTATTGGTCTGCAAGTATCTCCTGGGCTGCAGTTATAGGTTTGTCTTAGTATT
TC
>TRINITY_DN42988_c0_g1_i1 from sample A8 / Example unspliced isoform:TTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTT
TCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATAACGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTGTATTGCTAGATCTCATGCTCTATATA
GCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGACCAGGGCAGGCCCAGCTACTATTGC
ATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGATCGTCAGACAACTTGGCATCTATTG
ACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGgtccgttccctctcagagtttatgtttacgacatgccgtctaagtttactttcgatttgctttggctcttccacgacacgtaccatgagacagccaatttgacttcaaat
ggcagccccgtccatcgcctcattgagcagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGG
CGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAG
AAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTGGCTTTA
TTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCATTCTAATCTCGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGAT
GCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTA
GAATAAGAGATGTTGTCTATAATTGGAGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATA
AAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCAATTCCAGTTTTGTTGGTAAGTAAATATTTGCGTATTGGTCTGCAAGTATCTCCTGGGCTGCAGTTATAGGTTTGTCTTAGTATTTC
Intron 4 ATGTACATTA ... CCTGATATAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.4 | 36 | 34 | 19 |
| A2 | 42.31 | 15 | 14 | 8 |
| A3 | 48.24 | 22 | 35 | 6 |
| A4 | 58.02 | 17 | 42 | 5 |
| A5 | 62.96 | 5 | 14 | 3 |
| A6 | 45.45 | 57 | 69 | 26 |
| A7 | 48.84 | 55 | 70 | 35 |
| A8 | 55.56 | 24 | 40 | 20 |
| A9 | 43.48 | 78 | 80 | 40 |
| A10 | 44.28 | 56 | 64 | 25 |
>TRINITY_DN42747_c0_g1_i7 from sample A9 / Example spliced isoformCACCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGT
ATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAG
GAGAACTCTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATT
CTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAA
AATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAAT
ACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCATTCTAATCTCGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTG
CAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTG
ACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTTGTCTATAATTGGAGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAG
TTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCAATTCCAGTTTTGTTGGTAAGTAAATATTTGCGTATTGGTCG
>TRINITY_DN42747_c0_g1_i6 from sample A9 / Example unspliced isoform:CACCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGT
ATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAG
GAGAACTCTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCatgtacattatccattatcaatctcctgctattctttctctgttctctgtgattgaatgtgtaattgatgcatgcttgtaaacagaaaaaaagccatgaaagggaggcagcattttttacagagaagatatgtgtcgtgttttccaa
tgccatcgaccagggcaggcccagctactattgcattgatagctataattatacccattatgctctacttcctgctattttccaaccgaacgaatagtgatactctgcattcatcatcaaattcccaatttaaagcgcatcctcagcattcatttattttatctttggagaaattcttgaaaaccagaggccctcggcag
agctcaggatcgtcagacaacttggcatctattgacggtaatttgacacagagagctgcagagcgactagacgatgccatgtgggcaagagaacgcctggagctgacggactatcatcgagaaggtccgttccctctcagagtttatgtttacgacatgccgtctaagtttactttcgatttgctttggctcttccacga
cacgtaccatgagacagccaatttgacttcaaatggcagccccgtccatcgcctcattgagcagcattcgatcgattactggctgtgggcagacctaattgctcctgaaagtgagagacaattgaaaactgttgtcagggtgcaccgtcaagaggaggccgatttgttctacatccctttctttacaactattagctttt
ttctgctggagaaaccgaaatgcaagcaactttacagggtgtgcgtgcatgtccaaggttttatttttcaagctttttgttgaaaatttccgatgacctaaggataaggatgacagcagccttttgtaaaacgtgttcagtaaactacgatctaagtcatcgttttaaagacgcgagcaaacaaatagctggtacttaga
taacgatactcagcttggagccaaagcacgcatgttaagttttaactttccttatttatgtacatgggggatctggggtgcctgctctttggcgcctggacaggtcaatcctgatatacATGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACC
CTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTT
TTCCGTGGACGCCTGAAGAGAAATGCTG
Intron 5 GTACGGCACT ... CATTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.64 | 31 | 53 | 28 |
| A2 | 57.69 | 22 | 36 | 24 |
| A3 | 63.64 | 22 | 57 | 20 |
| A4 | 65.31 | 17 | 50 | 14 |
| A5 | 63.64 | 8 | 19 | 9 |
| A6 | 56.15 | 66 | 119 | 50 |
| A7 | 48.37 | 95 | 110 | 68 |
| A8 | 52.58 | 46 | 59 | 43 |
| A9 | 51.5 | 97 | 136 | 70 |
| A10 | 64.79 | 50 | 126 | 58 |
>TRINITY_DN110873_c0_g1_i1 from sample A2 / Example spliced isoformCACCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGT
ATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTG
GTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATG
TCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGA
AAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTC
AACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCT
CCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACG
>TRINITY_DN110873_c0_g1_i8 from sample A2 / Example unspliced isoform:CACCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGT
ATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCgtacggcactaaacacaattgattacaaacaataacgaggaagaaattcatccataactaaatcatttcactgataagggctcatcagtcaggataactgtattggaagatctcatgctttagctaaatcatttcgctgacaagggctcatcagtcag
gagaactctattgctagatctcatgctctatatagcttcagacccatccatccatgtacattatccattatcaatctcctgctattctttctctgttctctgtgattgaatgtgtaattgatgcatgcttgtaaacagaaaaaaagccatgaaagggaggcagcattttttacagagaagatatgtgtcgtgttttccaa
tgccatcgaccagggcaggcccagctactattgcattgatagctataattatacccattatgctctacttcctgctattttccaaccgaacgaatagtgatactctgcattcatcatcaaattcccaatttaaagcgcatcctcagcattcatttattttatctttggagaaattcttgaaaaccagaggccctcggcag
agctcaggatcgtcagacaacttggcatctattgacggtaatttgacacagagagctgcagagcgactagacgatgccatgtgggcaagagaacgcctggagctgacggactatcatcgagaaggtccgttccctctcagagtttatgtttacgacatgccgtctaagtttactttcgatttgctttggctcttccacga
cacgtaccatgagacagccaatttgacttcaaatggcagccccgtccatcgcctcattgagcagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTG
ACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCT
GTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTT
TGAAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGA
GAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGT
TAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCAC
G
Intron 6 GTACATTATC ... TTGTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.36 | 18 | 34 | 28.3 |
| A2 | 60 | 8 | 14 | 10 |
| A3 | 58.96 | 27.5 | 35 | 44 |
| A4 | 66.67 | 17.3 | 39 | 30 |
| A5 | 67.16 | 11 | 14 | 31 |
| A6 | 62.86 | 37 | 66.3 | 59 |
| A7 | 82.46 | 15 | 69 | 72 |
| A8 | 72.36 | 17 | 41 | 48 |
| A9 | 68.55 | 37.8 | 77.5 | 87 |
| A10 | 61.72 | 33.5 | 61 | 47 |
>TRINITY_DN127350_c0_g1_i12 from sample A1 / Example spliced isoformCCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAACGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTAT
TCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGA
GAACTGTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGACCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAA
CCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGATCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGG
CAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGTCCGTTCCCTCTCAGAGTTTATGTTTACGACATGCCGTCTAAGTTTACTTTCGATTTGCTTTGGCTCTTCCACGACACGTACCATGAGACAGCCAATTTGACTTCAAATGGCAGCCCCGTCCATCGCCTCATTGAGCAG
>TRINITY_DN127350_c0_g1_i5 from sample A1 / Example unspliced isoform:CCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAACGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTAT
TCCTCGCGGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGA
GAACTGTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATgtacattatccattatcaatctcctgctattctttctctgttctctgtgattgaatgtgtaattgatgcatgcttgtaaacagAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATG
CCATCGACCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAG
CTCAGGATCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGTCCGTTCCCTCTCAGAGTTTATGTTTACGACATGCCGTCTAAGTTTACTTTCGATTTGCTTTGGCTCTTCCACGACA
CGTACCATGAGACAGCCAATTTGACTTCAAATGGCAGCCCCGTCCATCGCCTCATTGAGCAGCATTCGATCGATTACTGGCTGTGGGCAGACCTAATTGCTCCGGAAAGTGAGAGACAATTGAAAACTGTTGTCAGGGTGCACCGTCAAGAGGAGGCCGATTTGTTCTACATCCCTTTCTTTACAACTATTAGCTTTTTT
CTGCTGGAGAAACCGAAATGCAAGCAACTTTACAGGGTGTGCGTGCATGTCCAAGGTTTTATTTTTCAAGCTTTTTGTTGAAAATTTCCGATGACCTAAGGATAAGGATGACAGCAGCCTTTTGTAAAACGTGTTCAGTAAACTACGATCTAAGTCATCGTTTTAAAGACGCGAGCAAACAAATAGCTGGTACTTAGATA
ACGATACTCAGCTTGGAGCCAAAGCACGCATGTTAAGTTTTAACTTTCCTTATTTATGTACATGGGGGATCTGGGGTGCCTGCTCTTTGGCGCCTGGACAGGTCAATCCTGATATACATGTATGCTGATTATTTTTCTAACGTAATATATGCTGCATTTCCAATAGAAAACCCAGCACGTATACCCATTGGTTTGTAACG
TAAAACATGCTGCATTTTGAAAAATAAAACACACCTGGATGCACAGTGGTTAGGACTAGATAAAAGCAATAACCTCTCAGATAGCTGCTATCCTTTCAACTTGTAAGACGATCTCCATTAACTTGTTACTCTGATATGGTCTGGACTTTACATTGTTTAGATCCAAGTAAGAACCATCATAAGTAAAGGTACCTTTGCTA
CTAAAGCTCTGTTTCCCTTATCTGAGAAGGCACAGCTTGACTCCACAGTGTTAATGCATCTCAACCACTTCCAATGCAATATACTAGCCAGGATATCAAACTCCTTTATGCTCATCAGATGGCCCTGTATATTTCATTGCACAGCGTTCAAACGTCCATTTTACTTGGAATTATTTTCTAGAATTTATCGCTGTACTCCC
CTTCATTCTTATTACTTGAACCCTGC
Intron 7 GTATAAGCCT ... CCGAACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.71 | 37 | 48 | 53 |
| A2 | 73.77 | 8 | 19 | 26 |
| A3 | 64 | 27 | 42 | 54 |
| A4 | 62.16 | 14 | 15 | 31 |
| A5 | 66.99 | 17 | 30 | 39 |
| A6 | 65.42 | 83 | 138 | 176 |
| A7 | 64.73 | 82 | 135 | 166 |
| A8 | 60.75 | 94 | 122 | 169 |
| A9 | 63.48 | 86 | 141 | 158 |
| A10 | 56.91 | 92 | 102 | 141 |
>TRINITY_DN105284_c0_g1_i5 from sample A5 / Example spliced isoformGGCGATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCAT
CGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAA
ATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATC
CCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCC
AGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCA
TTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCAT
GCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTA
>TRINITY_DN105284_c0_g1_i3 from sample A5 / Example unspliced isoform:GGCGATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATAACGAG
GAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTGTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTG
CTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGACCAGGGCAGGCCTAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTT
CCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGATCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATG
TGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATT
GgtataagcctggcgaagtgtggcttgagaaagatttgattcttccttatgttccgaacacagATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGAT
GTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAG
AAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGT
CAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTC
TCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGAT
GTTGAAGATAAAGCCAGCCATCATGCTA
Intron 8 GTCCGTTCCC ... CATGTCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.48 | 27 | 21 | 52 |
| A2 | 54.93 | 16 | 17 | 22 |
| A3 | 64.71 | 18 | 33 | 33 |
| A4 | 89.09 | 3 | 25 | 24 |
| A5 | 71.43 | 6 | 15 | 15 |
| A6 | 62.14 | 46 | 75 | 76 |
| A7 | 59.18 | 60 | 98 | 76 |
| A8 | 60.41 | 39 | 60 | 59 |
| A9 | 63.93 | 55 | 91 | 104 |
| A10 | 66.21 | 37 | 77 | 68 |
>TRINITY_DN45748_c0_g1_i1 from sample A7 / Example spliced isoformCGGCCGGAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGC
GGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCT
ATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGA
CCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGA
TCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGT
CTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGT
GGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAAT
TGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATT
TTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGC
TACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTT
TTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCA
>TRINITY_DN45748_c0_g1_i4 from sample A7 / Example unspliced isoform:CGGCCGGAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGC
GGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCT
ATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGA
CCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGA
TCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGgtccgttccctctcagagtttatgtttacgacatgccgtctaagtttactttcgatttgctttggctcttccacgacacgtacca
tgagacagccaatttgacttcaaatggcagccccgtccatcgcctcattgagcagcattcgatcgattactggctgtgggcagacctaattgctccggaaagtgagagacaattgaaaactgttgtcagggtgcaccgtcaagaggaggccgatttgttctacatccctttctttacaactattagcttttttctgctgg
agaaaccgaaatgcaagcaactttacagggtgtgcgtgcatgtccaagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGG
AAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATA
AAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGAC
TACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAA
GTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTC
TACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCT
CAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCA
Intron 9 GTACATTATC ... CATTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.27 | 36 | 34 | 28 |
| A2 | 51.35 | 18 | 14 | 24 |
| A3 | 53.4 | 24 | 35 | 20 |
| A4 | 66.26 | 13.5 | 39 | 14 |
| A5 | 65.71 | 6 | 14 | 9 |
| A6 | 51.13 | 55.7 | 66.5 | 50 |
| A7 | 55.47 | 55 | 69 | 68 |
| A8 | 61.76 | 26 | 41 | 43 |
| A9 | 47.9 | 80.5 | 78 | 70 |
| A10 | 53.56 | 51.8 | 61.5 | 58 |
>TRINITY_DN127350_c0_g1_i9 from sample A1 / Example spliced isoformCCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAACGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTAT
TCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGA
GAACTGTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCT
ACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTG
>TRINITY_DN127350_c0_g1_i3 from sample A1 / Example unspliced isoform:CCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAACGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTAT
TCCTCGCGGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGA
GAACTGTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATgtacattatccattatcaatctcctgctattctttctctgttctctgtgattgaatgtgtaattgatgcatgcttgtaaacagaaaaaaagccatgaaagggaggcagcattttttacagagaagatatgtgtcgtgttttccaatg
ccatcgaccagggcaggcccagctactattgcattgatagctataattatacccattatgctctacttcctgctattttccaaccgaacgaatagtgatactctgcattcatcatcaaattcccaatttaaagcgcatcctcagcattcatttattttatctttggagaaattcttgaaaaccagaggccctcggcagag
ctcaggatcgtcagacaacttggcatctattgacggtaatttgacacagagagctgcagagcgactagacgatgccatgtgggcaagagaacgcctggagctgacggactatcatcgagaaggtccgttccctctcagagtttatgtttacgacatgccgtctaagtttactttcgatttgctttggctcttccacgaca
cgtaccatgagacagccaatttgacttcaaatggcagccccgtccatcgcctcattgagcagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGAC
ATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGT
GCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTG
AAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCATTCTAATCTCGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGA
ATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGCCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTA
GAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTTGTCTATAATTGGAGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCA
Intron 10 GTAAGCCAGC ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.77 | 18 | 9 | 7 |
| A2 | 29.17 | 17 | 13 | 1 |
| A3 | 26.32 | 14 | 9 | 1 |
| A4 | 23.29 | 28 | 14 | 3 |
| A5 | 26.32 | 7 | 3 | 2 |
| A6 | 26.6 | 48.3 | 13 | 22 |
| A7 | 23.69 | 51 | 25 | 6.7 |
| A8 | 20.41 | 39 | 14 | 6 |
| A9 | 18.01 | 66 | 14 | 15 |
| A10 | 18.68 | 37 | 16 | 1 |
>TRINITY_DN105121_c0_g3_i1 from sample A4 / Example spliced isoformCGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATATCGA
GGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCT
GCTATTCTTTCTCTATTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGACCAGGGCAGGCCTAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTT
TCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGATCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCAT
GTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGTCCGTTCCCTCTCAGAGTTTATGTTTACGACATGCCGTCTAAGTTTACTTTCGATTTGCTTTGGCTCTTCCACGACACGTACCATGAGACAGCCAATTTGACTTCAAATGGCAGCCCCGTCCATCGCCTCATTGAGCAGCATTCGATCGATTACT
GGCTGTGGGCAGACCTAATTGCTCCGGAAAGTGAGAGACAATTGAAAACTGTTGTCAGGGTGCAACGTCAAGAGGAGGCCGATTTGTTCTACATCCCTTTCTTTACAACTATTAGCTTTTTTCTGCTGGAGAAACCGAAATGCAAGCAACTTTACAGGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGG
TCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTT
GGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCC
CTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTG
>TRINITY_DN105121_c0_g3_i2 from sample A4 / Example unspliced isoform:CGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTCAGCAGCGTACGGCACTAAACACAATTGATTACAAACAATATCGA
GGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCT
GCTATTCTTTCTCTATTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGACCAGGGCAGGCCTAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTT
TCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGATCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCAT
GTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGTCCGTTCCCTCTCAGAGTTTATGTTTACGACATGCCGTCTAAGTTTACTTTCGATTTGCTTTGGCTCTTCCACGACACGTACCATGAGACAGCCAATTTGACTTCAAATGGCAGCCCCGTCCATCGCCTCATTGAGCAGgtaagccagcacatag
ggtttaagaaataagaaaaaaagaaagacatcagttagggtttgggatagaattgatcattgctggcattagggtttcatttaaagaaaaggatcatcttgatcaaactgcctgcaatcagaccagaagataattcaatccatcgatgcttcgaatctttttgaattttccctctttcatgggttgaagtctcgattgtt
ttgttatttgcagCATTCGATCGATTACTGGCTGTGGGCAGACCTAATTGCTCCGGAAAGTGAGAGACAATTGAAAACTGTTGTCAGGGTGCAACGTCAAGAGGAGGCCGATTTGTTCTACATCCCTTTCTTTACAACTATTAGCTTTTTTCTGCTGGAGAAACCGAAATGCAAGCAACTTTACAGGGAGGCTTTAAAAT
GGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCG
AACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGG
CATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTG
Intron 11 GTACATTATC ... CATCGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.86 | 36 | 34 | 27 |
| A2 | 45.45 | 18 | 14 | 16 |
| A3 | 52.48 | 24 | 35 | 18 |
| A4 | 61.76 | 13 | 39 | 3 |
| A5 | 62.5 | 6 | 14 | 6 |
| A6 | 50.23 | 55.5 | 66 | 46 |
| A7 | 53.97 | 55 | 69 | 60 |
| A8 | 60.61 | 26 | 41 | 39 |
| A9 | 45.48 | 78.5 | 76 | 55 |
| A10 | 49 | 51 | 61 | 37 |
>TRINITY_DN113451_c0_g1_i1 from sample A3 / Example spliced isoformGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTC
AGCAGCGTACGGCACTAAACACAATTGATTACAAACAATAACGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCTATTGCTAGATCTCATGCTCTATATAGC
TTCAGACCCATCCATCCATGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGC
TTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTG
>TRINITY_DN113451_c0_g1_i4 from sample A3 / Example unspliced isoform:GTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTGCTTCAGTGATTTTC
AGCAGCGTACGGCACTAAACACAATTGATTACAAACAATAACGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCTATTGCTAGATCTCATGCTCTATATAGC
TTCAGACCCATCCATCCATgtacattatccattatcaatctcctgctattctttctctgttctctgtgattgaatgtgtaattgatgcatgcttgtaaacagaaaaaaagccatgaaagggaggcagcattttttacagagaagatatgtgtcgtgttttccaatgccatcgaccagggcaggcctagctactattgcat
tgatagctataattatacccattatgctctacttcctgctattttccaaccgaacgaatagtgatactctgcattcatcatcaaattcccaatttaaagcgcatcctcagcattcatttattttatctttggagaaattcttgaaaaccagaggccctcggcagagctcaggatcgtcagacaacttggcatctattgac
ggtaatttgacacagagagctgcagagcgactagacgatgccatgtgggcaagagaacgcctggagctgacggactatcatcgagaagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGA
AGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTG
Intron 12 GTACATTATC ... CATGTCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.43 | 36 | 34 | 52 |
| A2 | 50 | 18 | 14 | 22 |
| A3 | 58.62 | 24 | 35 | 33 |
| A4 | 70.79 | 13 | 39 | 24 |
| A5 | 70.73 | 6 | 14 | 15 |
| A6 | 55.91 | 56 | 66 | 76 |
| A7 | 56.86 | 55 | 69 | 76 |
| A8 | 65.79 | 26 | 41 | 59 |
| A9 | 52.91 | 81 | 78 | 104 |
| A10 | 55.56 | 52 | 62 | 68 |
>TRINITY_DN47099_c0_g2_i1 from sample A10 / Example spliced isoformGTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTACTTCAGTGATTTTCAGCG
GCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCTATTGCTAGATCTCATGCTCTATATAGCTTCA
GACCCATCCATCCATGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGA
GAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTG
>TRINITY_DN47099_c0_g2_i2 from sample A10 / Example unspliced isoform:GTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGCTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGCGGTAACAGAGCTACTTCAGTGATTTTCAGCG
GCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCTATTGCTAGATCTCATGCTCTATATAGCTTCA
GACCCATCCATCCATgtacattatccattatcaatctcctgctattctttctctattctctgtgattgaatgtgtaattgatgcatgcttgtaaacagaaaaaaagccatgaaagggaggcagcattttttacagagaagatatgtgtcgtgttttccaatgccatcgaccagggcaggcctagctactattgcattgat
agctataattatacccattatgctctacttcctgctattttccaaccgaacgaatagtgatactctgcattcatcatcaaattcccaatttaaagcgcatcctcagcattcatttattttatctttggagaaattcttgaaaaccagaggccctcggcagagctcaggatcgtcagacaacttggcatctattgacggta
atttgacacagagagctgcagagcgactagacgatgccatgtgggcaagagaacgcctggagctgacggactatcatcgagaaggtccgttccctctcagagtttatgtttacgacatgccgtctaagtttactttcgatttgctttggctcttccacgacacgtaccatgagacagccaatttgacttcaaatggcagc
cccgtccatcgcctcattgagcagcattcgatcgattactggctgtgggcagacctaattgctcctgaaagtgagagacaattgaaaactgttgtcagggtgcaccgtcaagaggaggccgatttgttctacatccctttctttacaactattagcttttttctgctggagaaaccgaaatgcaagcaactttacagggt
gtgcgtgcatgtccaagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTT
GAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGTATGCACGCTAGCTTATAACTTTTGCTGATATTTATTCGACTTAGTGAAGCTAATGATTACATAATGTTGGGTAGG
GATATCTAGCAAATGAGTTGAAGATTTGCAGTAAAATGGTTGTAAGTGCACTATAATTATGCCAGCTTCTTGTTTTACTCGTAATGAAAGTACTCTGATAAAAATAAATCTAGTTGTTAATTACTTTATTTAAACAATGTAAG
Intron 13 GCATTCGATC ... AACTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.25 | 28 | 18 | 57 |
| A2 | 51.72 | 21 | 17 | 28 |
| A3 | 56.29 | 21 | 15 | 39.1 |
| A4 | 65 | 14 | 28 | 24 |
| A5 | 59.09 | 9 | 7 | 19 |
| A6 | 58.17 | 52 | 53.7 | 91 |
| A7 | 52 | 66 | 51 | 92 |
| A8 | 57.58 | 42 | 39 | 75 |
| A9 | 57.32 | 70 | 68 | 120 |
| A10 | 49.78 | 58 | 37 | 78 |
>TRINITY_DN127350_c0_g1_i3 from sample A1 / Example spliced isoformCCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAACGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTAT
TCCTCGCGGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGA
GAACTGTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATG
CCATCGACCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAG
CTCAGGATCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGTCCGTTCCCTCTCAGAGTTTATGTTTACGACATGCCGTCTAAGTTTACTTTCGATTTGCTTTGGCTCTTCCACGACA
CGTACCATGAGACAGCCAATTTGACTTCAAATGGCAGCCCCGTCCATCGCCTCATTGAGCAGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGAC
ATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGT
GCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTG
AAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCATTCTAATCTCGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGA
ATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGCCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTA
GAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTTGTCTATAATTGGAGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCA
>TRINITY_DN127350_c0_g1_i4 from sample A1 / Example unspliced isoform:CCCACGTAAATTACAAACTAATCCATTTTAATTTGTGAGTTAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAACGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTAT
TCCTCGCGGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGTAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGA
GAACTGTATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATG
CCATCGACCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAG
CTCAGGATCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGTCCGTTCCCTCTCAGAGTTTATGTTTACGACATGCCGTCTAAGTTTACTTTCGATTTGCTTTGGCTCTTCCACGACA
CGTACCATGAGACAGCCAATTTGACTTCAAATGGCAGCCCCGTCCATCGCCTCATTGAGCAgcattcgatcgattactggctgtgggcagacctaattgctccggaaagtgagagacaattgaaaactgttgtcagggtgcaccgtcaagaggaggccgatttgttctacatccctttctttacaactattagctttttt
ctgctggagaaaccgaaatgcaagcaactttacagGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAA
GCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAA
TTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTG
GCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCATTCTAATCTCGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAAT
TAAGATGCATCTACGTCGTTCACAACGGGTGGCCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAG
CTACTAGAATAAGAGATGTTGTCTATAATTGGAGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGCATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCA
Intron 14 GTCCGTTCCC ... CATGTCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.48 | 27 | 21 | 52 |
| A2 | 54.93 | 16 | 17 | 22 |
| A3 | 64.71 | 18 | 33 | 33 |
| A4 | 89.09 | 3 | 25 | 24 |
| A5 | 71.43 | 6 | 15 | 15 |
| A6 | 62.14 | 46 | 75 | 76 |
| A7 | 59.18 | 60 | 98 | 76 |
| A8 | 60.41 | 39 | 60 | 59 |
| A9 | 63.93 | 55 | 91 | 104 |
| A10 | 66.21 | 37 | 77 | 68 |
>TRINITY_DN45748_c0_g1_i1 from sample A7 / Example spliced isoformCGGCCGGAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGC
GGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCT
ATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGA
CCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGA
TCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGT
CTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATTTGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGT
GGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAGCAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAAT
TGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGTTGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATT
TTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAGGATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGC
TACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATTTGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTT
TTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTTTTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCA
>TRINITY_DN45748_c0_g1_i5 from sample A7 / Example unspliced isoform:CGGCCGGAAACTAATCCATTTTAATTTGTGAGTGAGAGGTCTCCCAGGTCACTGGTATCGTTTTTAATTTTTGGCCATCGAGAGGTTTAAATGCCTGGGAGACACCATCTCAGCCCTTTTAAAGTGTCCAATGCGTTTGAAGCCCGTTCATTTCTTCACGCATAACGACAGACAGACAAGTCCCGGGTCGTATTCCTCGC
GGTAACAGAGCTACTTCAGTGATTTTCAGCGGCGTACGGCACTAAACACAATTGATTACAAACAATATCGAGGAAGAAATTCATCCATAACTAAATCATTTCACTGATAAGGGCTCATCAGTCAGGATAACTGTATTGGAAGATCTCATGCTTTAGCTAAATCATTTCGCTGACAAGGGCTCATCAGTCAGGAGAACTCT
ATTGCTAGATCTCATGCTCTATATAGCTTCAGACCCATCCATCCATGTACATTATCCATTATCAATCTCCTGCTATTCTTTCTCTGTTCTCTGTGATTGAATGTGTAATTGATGCATGCTTGTAAACAGAAAAAAAGCCATGAAAGGGAGGCAGCATTTTTTACAGAGAAGATATGTGTCGTGTTTTCCAATGCCATCGA
CCAGGGCAGGCCCAGCTACTATTGCATTGATAGCTATAATTATACCCATTATGCTCTACTTCCTGCTATTTTCCAACCGAACGAATAGTGATACTCTGCATTCATCATCAAATTCCCAATTTAAAGCGCATCCTCAGCATTCATTTATTTTATCTTTGGAGAAATTCTTGAAAACCAGAGGCCCTCGGCAGAGCTCAGGA
TCGTCAGACAACTTGGCATCTATTGACGGTAATTTGACACAGAGAGCTGCAGAGCGACTAGACGATGCCATGTGGGCAAGAGAACGCCTGGAGCTGACGGACTATCATCGAGAAGgtccgttccctctcagagtttatgtttacgacatgccgtctaagtttactttcgatttgctttggctcttccacgacacgtacca
tgagacagccaatttgacttcaaatggcagccccgtccatcgcctcattgagcaggtaagccagcacatagggtttaagaaataagaaaaaaagaaagacatcagttagggtttgggatagaattgatcattgctggcattagggtttcatttaaagaaaaggatcatcttgatcaaactgcctgcaatcagaccagaag
ataattcaatccatcgatgcttcgaatctttttgaattttccctctttcatgggttgaagtctcgattgttttgttatttgcagcattcgatcgattactggctgtgggcagacctaattgctccggaaagtgagagacaattgaaaactgttgtcagggtgcaccgtcaagaggaggccgatttgttctacatcccttt
ctttacaactattagcttttttctgctggagaaaccgaaatgcaagcaactttacagggtgtgcgtgcatgtccaagGAGGCTTTAAAATGGATAAAAGACCAACCGGCATGGCATCGGTCTAATGGAAGGGATCATATTCTTCCCGTTCACCACCCTTGGTCTTTCAAATCTGTTCGGAGGTTCATGAAGAATGCGATT
TGGCTCCTACCTGACATGGATTCTACAGGAAATTGGTATAAGCCTGGCGAAGTGTGGCTTGAGAAAGATTTGATTCTTCCTTATGTTCCGAACACAGATATCTGTGATGATGCTTGCTTGGCCGAGAGTTGGTCTCAGCGAAAAACATTGCTGTTTTTCCGTGGACGCCTGAAGAGAAATGCTGGTGGAAAGATTCGCAG
CAAACTAGTCGCTGTGCTGCAAAATAATAAAGATGTCATAATTGAAGAAGGGTCAATTGGAGAAGCAGGCAAAGTGGCAACACAAACTGGCATGCGCAGTTCTGTTTTTTGCTTAAGCCCTGCTGGAGACACACCCTCGTCTGCGAGATTGTTTGATGCAATTGTGAGTGGATGTATCCCAGTCCTAGTCAGTGATGAGT
TGGAGTTGCCTTTTGAAGGAATACTAGACTACAGAAAGGTGGCTTTATTTGTGTCCTCAGTTGATGCTATACAGCCAGGGTGGCTTCTAGCTTACTTGCGTAGCATCAGTCCAAAACAAGTGGAGAAGATGCGTTCTAATCTTGCAAAGTTTTCGAAGCATTTTCAATATTCAAGTCCAGCTCAGCCACTTGGTTCAGAG
GATTTGACTTGGAGAATGATTGCAGGTAAGTTGTCAACAATTAAGATGCATCTACGTCGTTCACAACGGGTGGTCAACGGTTCACGTAGTTTGTGTATATGTGATTGTAGATATCCTAATTCTACGAAGCACTAACAGCAGCATTAGTCGGCATATTTGGGCTACTTTCTAATATTCATTTTTCCGGTTAAGATGTTATT
TGCGATTCTTAGTTAGAGCCTGACAACTCTACTCTCCACAGCTACTAGAATAAGAGATGTCTATAATTGGTGGTCCTGGTAGATTTGTTGGCCCTTGCTTTGTTACCTATCCTTGTATTTACTAATATAATCTAATATTATATGACCTTCACTTGGTCATTTTTTTCATAAATACCATGCCTTTATTAAGACTCAGTTTT
TTTGTTTTTCCACATGAAGTTCTTTATCTCAGATGTTGAAGATAAAGCCAGCCATCATGCTAGCGATTAAAATAACTATTTGAGTTACTTTTGTCATGCA