sp|Q9ZP54|PARP1_ARATH ----> Poly [ADP-ribose] polymerase 1
Intron 1 GTAAGATCTA ... TTTCCTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.27 | 65 | 10.7 | 37 |
| A2 | 27.69 | 47 | 6.9 | 18 |
| A3 | 8.89 | 41 | 10.7 | 4 |
| A4 | 30.16 | 44 | 4.3 | 19 |
| A5 | 15.79 | 16 | 3.2 | 3 |
| A6 | 25.99 | 91.1 | 13.1 | 32 |
| A7 | 18.09 | 154 | 19.1 | 34 |
| A8 | 23.83 | 201.3 | 35.6 | 63 |
| A9 | 19.91 | 185 | 15.3 | 46 |
| A10 | 19.59 | 119 | 13.9 | 29 |
>TRINITY_DN129385_c1_g1_i7 from sample A1 / Example spliced isoformTTTTGTACTCTATTATTATTATTATCTTTTTACATAAAGTATTGGAGGCTTGATGGTTGTTTATTTCTTGATTGTAATGTTAGATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAATCTTAGGAAGTATGTGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGA
TGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCCTGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGG
AGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAG
GCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGA
ATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATA
ACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAA
CTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGA
AGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAG
TTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGAT
TATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTGAGGT
GTTGACAGAAGTGCAAAACTTGATCAAACGGAATGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGTCTTA
TTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATATGAT
GCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAA
GAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGG
GTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCGGGTG
TCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGT
TTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTC
>TRINITY_DN129385_c1_g1_i10 from sample A1 / Example unspliced isoform:CGTATATTGCCACTACCGCCTTTATTTATACAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATG
CAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATG
TGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCC
TGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAA
GAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTG
CAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACT
ACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATC
AGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAG
TTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACT
GGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAA
CAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAG
AAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTGAGGTGTTGACAGAAGTGCAAAACTTGATCAAACGGAATGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCA
AAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGTCTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGgtaag
atctatcacatgaatatcatgatattcaatacgattcactcctgaaggcttttctaagtccttttgtctctttttgataaatgagttttaaggagattaagtaattctcttggcttctatgtgcatgaatttggcttccatttcctccagGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGA
ATATGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACA
CACACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTA
CCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGC
TCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTT
TTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTC
Intron 2 GTAAGTGATG ... TTGTCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.71 | 119 | 33 | 5.6 |
| A2 | 12.99 | 67 | 10 | 10 |
| A3 | 14.56 | 88 | 15 | 1.6 |
| A4 | 10.34 | 52 | 6 | 1 |
| A5 | 18.52 | 22 | 5 | 0 |
| A6 | 7.69 | 24 | 2 | 1.2 |
| A7 | 23.18 | 116 | 35 | 1 |
| A8 | 14.52 | 53 | 9 | 0.6 |
| A9 | 19.9 | 132.8 | 33 | 0 |
| A10 | 22.39 | 104 | 30 | 0 |
>TRINITY_DN129385_c1_g1_i12 from sample A1 / Example spliced isoformCGTATATTGCCACTACCGCCTTTATTTATACAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATG
CAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATG
TGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCC
TGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAA
GAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTG
CAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACT
ACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATC
AGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAG
TTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACT
GGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAA
CAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGTATGAATGTACAGCTTTTTTTTCCAAATGTATTTTTTTCTTTTGTAATTTCAGCAGGTCCTTTAATTAAAATACCTTTTTTCTCAAAAATTGTTAGGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAG
AGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGTATTCCTAAAATGGTAAAACCCCTTTTTAATACTTGTTATAGAAATGTTATTAACACCAT
AATGTCCAGGATGTAGTTGAATGGTCATTGGATGTAACTTGCTCACAATAGCCACCGGATGTAACTTCTTTTTATGGTCATGTATGAGTTCATTAACCTCTACTAATGTTTTTCTTCCACGTTTGGTATGGATGTTATTAGTGTCACATATTGAGTTTTGCATTTGTAGTAGTTGGTGTATCTAAGTTTGTTTTACCATT
TTGTTCCTCACACTATTGGTTAGTTACTTGGACGCTCTTCTTAGGGGTTTTCTTGAATCTCTTTTCTGGTCTCCTTCAGTTTCTTGAGTGTATTGTTCTCTGTTGTGGGTTTTGGATACTTTCGTGGCACTCTTGTTTATATTCTAAATGCCTTTGGTTCAATATTTTTATGTATCTCTATTTGTACCTTTGGTAATTGT
TGTCATTGTGTTTGTTGGCCTGCAATTTTGGCATAATTTGGGTCTCACCTCCATGCTATCTCTCTCAAGGGGACAACACAACAATTGAGGTGACAAGCTGACTTTTATTTTTAGTATTGACGACTCCTAACTAGAACACAAGTAGACTTATAAGAAAA
>TRINITY_DN129385_c1_g1_i9 from sample A1 / Example unspliced isoform:CGTATATTGCCACTACCGCCTTTATTTATACAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATG
CAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATG
TGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCC
TGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAA
GAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTG
CAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACT
ACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAAAAGATAACAAATATCTTAGTGAGGTTGGATTATTTCCTGGATCTCACGTTTCATTCAATGGCTACGCCTCTCTTGTTTCTTAAATAGATGTTATTTTGCATTCATGATTAACTTTGCTTCCGTGCAGTGGTTTACATCACAAAAGGGAAAGAAG
CTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGgtaagtgatgcaaccacagtctttggttttatagggtgctttagtaagagtgaaaaactgtt
agtccatgtagatcctttttaaaagtcttatagtattgcttatttttaaaggatatatccgcagaaaaggatgggatgttcatgtgaccgtgtgctatgttctatgattaggagacacgggatttagttaaattgtggttttacagttttgcttgaccagataaggttgtctgtagGTGGAATGGAAGAGGAAACTTGAG
GCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAGTAAGATTGCAAAACAAGTCTGGCTTTGCAATGTGTACACGTGCTTATTATTGTAGCTATGAAATATGTTTGTGAGTATATTTGGGGTAAGACTGCAAAACAGGCCTGGTTTTGAAATGTGTACACATGCTTATTGTTTTAGCTATGAAATATATTTGTGAGT
ATATTTGGGGTAAGACTGCAAAACAGGCCTGGTTTTGAAATGTGTACACATGCTTATTGTTTTAGCTATGAAATATATTTGTGAGTATATTTGGGGTAAG
Intron 3 GTATGTATCC ... GTAATGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 12 | 1 | 27 |
| A2 | 73.53 | 9 | 0 | 25 |
| A3 | 58.33 | 10 | 4 | 14 |
| A4 | 86.36 | 3 | 1 | 19 |
| A5 | 54.55 | 5 | 2 | 6 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 57.69 | 11 | 0 | 15 |
| A8 | 100 | 0 | 0 | 3 |
| A9 | 35.71 | 9 | 0 | 5 |
| A10 | 35.29 | 11 | 0 | 6 |
>TRINITY_DN117703_c0_g1_i8 from sample A3 / Example spliced isoformCGCTTGGGGTTGGGACTATAAGATTGTTTTCACTTTCAGTTATCCGTGGGGGATTTGCTCTCACCCTTGTCTTTCTATTTTGACTTTCATTTTTATGATTACACATATCAGAAACATATTTATCTATTGTTTTTCTGGCTTATGGTCCAGTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAAC
ATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAATCTTAGGAAGTATGTGGAAGGTATTGGT
>TRINITY_DN117703_c0_g1_i7 from sample A3 / Example unspliced isoform:CGCTTGGGGTTGGGACTATAAGATTGTTTTCACTTTCAGTTATCCGTGGGGGATTTGCTCTCACCCTTGTCTTTCTATTTTGACTTTCATTTTTATGATTACACATATCAGAAACATATTTATCTATTGTTTTTCTGGCTTATGGTCCAGTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAAC
gtatgtatcctagccttttgtactctattattattattatctttttacataaagtattggaggcttgatggttgtttatttcttgattgtaatgttagATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATGTGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGG
TGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCCTGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGT
GGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGT
AAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGA
CCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTC
CCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTG
GAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGA
CCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGG
ATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTC
CCTCTGGAAATTGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCA
AAAAGGGTTTGAGGTGTTGACAGAAGTGCAAAACTTGATCAAACGGAATGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAA
TAGCTTCTGGTCTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGA
GAAGGAGAATATGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTA
TTGCTACACACACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTC
ATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAAC
TGCAAAGCTCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATG
TACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAA
Intron 4 GTATGCCAAC ... CATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.98 | 121 | 8.2 | 47 |
| A2 | 17.52 | 65.9 | 6.1 | 14 |
| A3 | 30 | 49 | 4.1 | 21 |
| A4 | 25 | 57 | 2.2 | 19 |
| A5 | 12.5 | 14 | 1.3 | 2 |
| A6 | 28.56 | 220.1 | 15.5 | 88 |
| A7 | 28.74 | 300 | 20.6 | 121 |
| A8 | 24.82 | 427 | 34.6 | 141 |
| A9 | 28.13 | 281 | 14.6 | 110 |
| A10 | 18.01 | 223 | 18.3 | 49 |
>TRINITY_DN44292_c0_g2_i9 from sample A7 / Example spliced isoformAGGCTCCAGCGACTGGATATATGGTAATTTTTTCCCCTATTAGTATAATTCATGTCGCTCCCATGAGAACTTTTGATAACTAATGTGGCTGCCTCGTTCCGAGTGAGCTGCAGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAAGAAGAATCCCATGGGATTGATG
CTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACT
ATACAATGAGTATATAGTATATGATGCTGCTCAGGTG
>TRINITY_DN44292_c0_g2_i11 from sample A7 / Example unspliced isoform:CATGAGCTAAAAAGTGCAAAGgtatgccaactattcgcgttgaagttattttcaagatcttttgtctctggtcacatgcataaaaggaagttgagacgatgcagacttttgtgaccattctcaaattggtactcttcgttttcgtgcattttaccttttttatcttatcattttacagTATATGGAAAAGCCTCCCAAAG
GAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGCAAACTCGAAAGCCTCAGCTTCCTCCATTTAATTTC
GGCAGATGGGCTGCTGTTTGATCTTTTAGATAAGAAATCTGCTTGAAAAATGTAGTCCGGATAAGTGGAATTGTTCTTTTGGATGACATTTACTGAAAGTTTTTTTTTTCATGATGTTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATA
TGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTG
GAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTCGTTGACA
CACCTAAAGTTACACGAGGGGAATGCCAAATTACAGTGAGAATATAGAGATGAATGAAATAAATACAAATCTCT
Intron 5 GTATGAATGT ... AAATTGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.25 | 130 | 37 | 29 |
| A2 | 17.3 | 98 | 16 | 25 |
| A3 | 17.48 | 144 | 37 | 24 |
| A4 | 19.86 | 111 | 36 | 19 |
| A5 | 20 | 46 | 18 | 5 |
| A6 | 15.53 | 87 | 15 | 17 |
| A7 | 15.64 | 275 | 54 | 48 |
| A8 | 12.07 | 153 | 24 | 18 |
| A9 | 17.18 | 253 | 62 | 43 |
| A10 | 15.01 | 218 | 56 | 21 |
>TRINITY_DN129385_c1_g1_i7 from sample A1 / Example spliced isoformTTTTGTACTCTATTATTATTATTATCTTTTTACATAAAGTATTGGAGGCTTGATGGTTGTTTATTTCTTGATTGTAATGTTAGATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAATCTTAGGAAGTATGTGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGA
TGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCCTGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGG
AGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAG
GCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGA
ATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATA
ACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAA
CTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGA
AGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAG
TTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGAT
TATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTGAGGT
GTTGACAGAAGTGCAAAACTTGATCAAACGGAATGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGTCTTA
TTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATATGAT
GCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAA
GAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGG
GTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCGGGTG
TCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGT
TTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTC
>TRINITY_DN129385_c1_g1_i12 from sample A1 / Example unspliced isoform:CGTATATTGCCACTACCGCCTTTATTTATACAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATG
CAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATG
TGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCC
TGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAA
GAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTG
CAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACT
ACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATC
AGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAG
TTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACT
GGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAA
CAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTgtatgaatgtacagcttttttttccaaatgtatttttttcttttgtaatttcagcaggtcctttaattaaaataccttttttctcaaaaattgttagGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAG
AGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGTATTCCTAAAATGGTAAAACCCCTTTTTAATACTTGTTATAGAAATGTTATTAACACCAT
AATGTCCAGGATGTAGTTGAATGGTCATTGGATGTAACTTGCTCACAATAGCCACCGGATGTAACTTCTTTTTATGGTCATGTATGAGTTCATTAACCTCTACTAATGTTTTTCTTCCACGTTTGGTATGGATGTTATTAGTGTCACATATTGAGTTTTGCATTTGTAGTAGTTGGTGTATCTAAGTTTGTTTTACCATT
TTGTTCCTCACACTATTGGTTAGTTACTTGGACGCTCTTCTTAGGGGTTTTCTTGAATCTCTTTTCTGGTCTCCTTCAGTTTCTTGAGTGTATTGTTCTCTGTTGTGGGTTTTGGATACTTTCGTGGCACTCTTGTTTATATTCTAAATGCCTTTGGTTCAATATTTTTATGTATCTCTATTTGTACCTTTGGTAATTGT
TGTCATTGTGTTTGTTGGCCTGCAATTTTGGCATAATTTGGGTCTCACCTCCATGCTATCTCTCTCAAGGGGACAACACAACAATTGAGGTGACAAGCTGACTTTTATTTTTAGTATTGACGACTCCTAACTAGAACACAAGTAGACTTATAAGAAAA
Intron 6 GTTGGATTAT ... TTCCGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.52 | 197 | 81 | 54 |
| A2 | 22 | 122.3 | 48 | 21 |
| A3 | 23.74 | 151 | 70 | 24 |
| A4 | 25.48 | 98 | 39 | 28 |
| A5 | 23.08 | 55 | 29 | 4 |
| A6 | 24.79 | 44 | 23 | 6 |
| A7 | 26.48 | 193 | 113 | 26 |
| A8 | 19 | 81 | 34 | 4 |
| A9 | 23.87 | 126 | 57 | 22 |
| A10 | 24.96 | 254 | 125 | 44 |
>TRINITY_DN129385_c1_g1_i12 from sample A1 / Example spliced isoformCGTATATTGCCACTACCGCCTTTATTTATACAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATG
CAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATG
TGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCC
TGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAA
GAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTG
CAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACT
ACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATC
AGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAG
TTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACT
GGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAA
CAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGTATGAATGTACAGCTTTTTTTTCCAAATGTATTTTTTTCTTTTGTAATTTCAGCAGGTCCTTTAATTAAAATACCTTTTTTCTCAAAAATTGTTAGGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAG
AGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGTATTCCTAAAATGGTAAAACCCCTTTTTAATACTTGTTATAGAAATGTTATTAACACCAT
AATGTCCAGGATGTAGTTGAATGGTCATTGGATGTAACTTGCTCACAATAGCCACCGGATGTAACTTCTTTTTATGGTCATGTATGAGTTCATTAACCTCTACTAATGTTTTTCTTCCACGTTTGGTATGGATGTTATTAGTGTCACATATTGAGTTTTGCATTTGTAGTAGTTGGTGTATCTAAGTTTGTTTTACCATT
TTGTTCCTCACACTATTGGTTAGTTACTTGGACGCTCTTCTTAGGGGTTTTCTTGAATCTCTTTTCTGGTCTCCTTCAGTTTCTTGAGTGTATTGTTCTCTGTTGTGGGTTTTGGATACTTTCGTGGCACTCTTGTTTATATTCTAAATGCCTTTGGTTCAATATTTTTATGTATCTCTATTTGTACCTTTGGTAATTGT
TGTCATTGTGTTTGTTGGCCTGCAATTTTGGCATAATTTGGGTCTCACCTCCATGCTATCTCTCTCAAGGGGACAACACAACAATTGAGGTGACAAGCTGACTTTTATTTTTAGTATTGACGACTCCTAACTAGAACACAAGTAGACTTATAAGAAAA
>TRINITY_DN129385_c1_g1_i9 from sample A1 / Example unspliced isoform:CGTATATTGCCACTACCGCCTTTATTTATACAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATG
CAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAGGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATG
TGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCC
TGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAA
GAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTG
CAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACT
ACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAAAAGATAACAAATATCTTAGTGAGgttggattatttcctggatctcacgtttcattcaatggctacgcctctcttgtttcttaaatagatgttattttgcattcatgattaactttgcttccgtgcagTGGTTTACATCACAAAAGGGAAAGAAG
CTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTAAGTGATGCAACCACAGTCTTTGGTTTTATAGGGTGCTTTAGTAAGAGTGAAAAACTGTT
AGTCCATGTAGATCCTTTTTAAAAGTCTTATAGTATTGCTTATTTTTAAAGGATATATCCGCAGAAAAGGATGGGATGTTCATGTGACCGTGTGCTATGTTCTATGATTAGGAGACACGGGATTTAGTTAAATTGTGGTTTTACAGTTTTGCTTGACCAGATAAGGTTGTCTGTAGGTGGAATGGAAGAGGAAACTTGAG
GCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAGTAAGATTGCAAAACAAGTCTGGCTTTGCAATGTGTACACGTGCTTATTATTGTAGCTATGAAATATGTTTGTGAGTATATTTGGGGTAAGACTGCAAAACAGGCCTGGTTTTGAAATGTGTACACATGCTTATTGTTTTAGCTATGAAATATATTTGTGAGT
ATATTTGGGGTAAGACTGCAAAACAGGCCTGGTTTTGAAATGTGTACACATGCTTATTGTTTTAGCTATGAAATATATTTGTGAGTATATTTGGGGTAAG
Intron 7 GTAATTTTTT ... TGAGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.25 | 71 | 6 | 9 |
| A2 | 16.16 | 83 | 7.3 | 16 |
| A3 | 28.13 | 69 | 6.5 | 27 |
| A4 | 19.05 | 51 | 4.1 | 12 |
| A5 | 16.67 | 15 | 0.8 | 3 |
| A6 | 23.51 | 205 | 12.8 | 63 |
| A7 | 23.83 | 179 | 9.3 | 56 |
| A8 | 20.58 | 274 | 18 | 71 |
| A9 | 19.42 | 224 | 22 | 54 |
| A10 | 22.01 | 163 | 6.8 | 46 |
>TRINITY_DN117703_c0_g1_i12 from sample A3 / Example spliced isoformCAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATGCAAGGCATGCAAACAGACCATCAACAAAGA
CGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAAGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATGTGGAAGGTATTGGTGAAGGTTCTATGTTGG
GTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCCTGGCGTCATGCCAAATGCTTCCTAGAGAAT
GGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAA
TAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTT
CAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACA
GATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAG
GAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAA
TTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAG
GCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAAT
TGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTG
AGGTGTTGACAGAAGTGCAAAACTTGATCAAACGGAATGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGT
CTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATA
TGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACAC
ACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCT
TCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCG
GGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTA
ATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAA
>TRINITY_DN117703_c0_g1_i4 from sample A3 / Example unspliced isoform:AGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGTCTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGG
ACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATATGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGgtaattttttcccc
tattagtataattcatgtcgctcccatgagaacttttgataactaatgtggctgcctcgttccgagtgagctgcagTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGC
TAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTG
AAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCA
GATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTA
AATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAA
Intron 8 GTAAGATTGC ... CAATTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.81 | 194 | 24 | 33 |
| A2 | 16.25 | 134 | 25 | 27 |
| A3 | 13.02 | 137 | 18 | 23 |
| A4 | 16.53 | 101 | 17 | 23 |
| A5 | 21.1 | 43 | 13 | 10 |
| A6 | 11.71 | 49 | 9 | 4 |
| A7 | 12.79 | 283 | 29 | 54 |
| A8 | 14.53 | 100 | 5 | 29 |
| A9 | 14.49 | 236 | 24 | 56 |
| A10 | 10.6 | 274 | 14 | 51 |
>TRINITY_DN117703_c0_g1_i12 from sample A3 / Example spliced isoformCAAAATTACAAGATCAGAACTGCGAAAAGCTCTTCCCCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATGCAAGGCATGCAAACAGACCATCAACAAAGA
CGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAAGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATGTGGAAGGTATTGGTGAAGGTTCTATGTTGG
GTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCCTGGCGTCATGCCAAATGCTTCCTAGAGAAT
GGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAA
TAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTT
CAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACA
GATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAG
GAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAA
TTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAG
GCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAAT
TGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTG
AGGTGTTGACAGAAGTGCAAAACTTGATCAAACGGAATGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGT
CTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATA
TGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACAC
ACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCT
TCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCG
GGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTA
ATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAA
>TRINITY_DN117703_c0_g1_i2 from sample A3 / Example unspliced isoform:GGCATGTTTGTAAAATCTGATCATCAACTCTCTCCTGTTGGTTTTGAGAGTAACTGCATTTCTTCTTAGCCTGTTGAATGGTTTGCTTTTTCACTTTCTGTTAACAAGATTTGAGACAATAAACAATGCTTTTATTTCAGTTACTTTGTTAGCTAACGAACACAAGTTCAAGCTTGAACCTTGCGACTCAGATTGTTAGT
CTGTGTAATATGTATGTTTGCCGAAGCTTTGAGGATGAATCCATGGTGTAAGGAAATATCTGATATATGCTTACACGTTACCTTTAATGTTATGCCAGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGC
ATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTG
GAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAgtaagattgcaaaacaagtctggctttgcaatgtgtacacgtgcttattattgtagctatgaaatatatttgtgagtata
tttggggtaagactgcaaaacaggcctggttttgaaatgtgtacacatgcttattgttttagctatgaaatatatttgtgagtatatttggggtaagactgcaaaacaggcttggctttgaaatgtgtacacatgcttattgttttagctatgaagtatatttatgagtaaatttggggtatgaattttaacaatgcaca
gatgttttgttgtgttgagcaattgccagATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGT
CAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGGTAACCTTTCTATGAGCCATTGCAGATAGAAGTGCCCCCTTATTGTCTTGTGCAA
TGTGTTTTATTTATTGTTATCTACTATTTGTTATTATTTTAATTTTTAAGTGATTGATAACCAACTTCAGCTCAGGTCAAGATCACTTTATTCTCTATGTTTAGAGTCTTAATATCTTTCTGCTTTTTCATTTGGAGAGCCTATTGAGGCTGTGTACTGGTTGGAACTGATTGATTCTAAGTTGCACTGAAACGGATACG
GATGCGGGGGGTGAAATGGATACGGCAAATTTTCAAAAAACCTGGATACGAT
Intron 9 GTACATTAGA ... GCTGACGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.36 | 82 | 3 | 25 |
| A2 | 25 | 60 | 1 | 20 |
| A3 | 32.32 | 67 | 0 | 32 |
| A4 | 36.21 | 37 | 1 | 21 |
| A5 | 32.5 | 27 | 0 | 13 |
| A6 | 28.7 | 77 | 1 | 31 |
| A7 | 22.44 | 197 | 0 | 57 |
| A8 | 27.91 | 186 | 3 | 72 |
| A9 | 25.85 | 175 | 0 | 61 |
| A10 | 27.96 | 134 | 0 | 52 |
>TRINITY_DN44913_c0_g1_i12 from sample A8 / Example spliced isoformCTCATCTTTTAGCTGTGCGTATCACTGTGACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATGCAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAG
TTCGATGGCTTCATGCCTTTGTGGAATCATGCAGGATGTATTCTAAAGAAACAAAGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATGTGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGA
GTATGCCATAGAGAATGCTAAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCCTGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTT
GGGACAGCCTGACTGATGAAGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGAT
AGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTAT
GCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAA
AGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAA
CTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAA
AGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTG
GTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGATTATGGAGTTGATGAATCACGACAAAAAAACATT
GGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTGAGGTGTTGACAGAAGTGCAAAACTTGATCAAACGGAA
TGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGTCTTATTAACTTTGAAAATAATGACGAGGATCCTTTGG
ATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATATGATGCATACTTTCCTCATAAAAGCAAACTTAGAAAC
CGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGA
AGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGT
ATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGT
AATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGG
GCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTCGTTGACACACCTAAAGTTACACGAGGGGAATGCCAAATTACAGTGAGAATATAGAGATGAATGAAATAAATACAAATCTATGCCTTGATCACAG
>TRINITY_DN44913_c0_g1_i2 from sample A8 / Example unspliced isoform:ACGAAGATGACCTGAAATCAAAGgtacattagatttgttggctattccttctgattgctggctaatgtaaaggtctgatctgttgtaagcattcgaaatacgatactatgttcatccaagtggaaaggagaagtggacttgttgaagtttctctttccatgtgttttaagcttttattattttacgtattcgtttactgt
acttctcatgttcaaagctactctggtaggattacgtctgatctgttgtaagcattcgaaatacgatactatgttcatccaagtggaaaggagaagtggacttgttgaagtttctctttccatgtgttttaagcttttattattttacgtattcgtttactgtacttctcatgttcaaagctacgctggtaggattacgt
ctgatctgttgtaagcattcgaaatacgatactatgttcatccaagtggaaaggagaagtggacttgttgaagtttctctttccatgtgtttttaaccttttatattttacgtattcgtttactgtacttctcatgttcaaagctacgctggcaggattacgtcttttactagacagttttaggttgtctgcaggccatt
tccaccaggagtgatcatgcttcacgagttttgaattttctagtcaatattgttttaacctgaaaacagaagagtctgtttgattaacgtagtgaattattgagtagccagtggagttggaaaaaatcaatggttttgtaaggatggagttgcattctccttttaaatgacatcattgaggcctagaagccataaagtgg
gattgcatgtcattctcctttgaaatgaccacattgaagcctaagagccataaaatggtccttgataatagtcttctctagtagtcacatctgactatttgcctgctgatgtctattttgttatctgtggtgctgatgtagatatctattgtttttatgtggtgctgacgtagATTCAAATGTTGGAGACTCTTCGGGAC
ATTGAAATAGCTTCTGGTCTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAAT
TGATAGAGAAGGAGAATATGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTG
CGCAGTATTGCTACACACACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCT
TGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTAT
TGCCAACTGCAAAGCTCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAG
GAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTCGTTGACACACCTAAAGTTACACGAGGGGAATGCCAAATTACAGTGAGAAT
ATAGAGATGAATGAAATAAATACAAATCTATGCCTTGATCACAG
Intron 10 GTAATTAGTC ... ATTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 92.78 | 5.5 | 65 | 75 |
| A2 | 73.81 | 20.4 | 43 | 71 |
| A3 | 88.19 | 8 | 68 | 48 |
| A4 | 69.87 | 19.9 | 48 | 44 |
| A5 | 80.52 | 6.1 | 28 | 21 |
| A6 | 78.65 | 145.4 | 387 | 680 |
| A7 | 73.18 | 207.6 | 444 | 685 |
| A8 | 79.21 | 250.8 | 710 | 1193 |
| A9 | 76.96 | 161.6 | 398 | 678 |
| A10 | 80.78 | 59.3 | 215 | 281 |
>TRINITY_DN42976_c0_g1_i1 from sample A9 / Example spliced isoformTAGTATATGATGCTGCTCAGGTGCAAACTCGAAAGCCTCAGCTTCCTCCATTTAATTTCGGCAGATGGGCTGCTGTTTGATCTTTTAGACAAGAAATCTGCTTGAAAAATGTAGTCCGGATAAGTGGAATTGTTCTTTTGGATGACATTTACTGAAAGTTTTTTTTTTCATGATGTTCAGGTGAAGCTGCAGTTTCTGTT
GAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCG
ACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTCGTTGACACACCTAAAGTTACACGAGGGGAATGCCAAATTACAGTGAGAATATAGAGATGAATGAAATAAATACAAATCTATGCCTTGATCA
>TRINITY_DN42976_c0_g1_i12 from sample A9 / Example unspliced isoform:CATGCTTTAGTTGATTTGCCTGCTTGGTGGATTGATGGATGGATATTATTTTACTGGAAGACATTTTCTGGATAGCCATATCATTCAAATGTACACTATTGGTTGATTGCAGATGACATTATTCTCTAGCCATATTTGTATTTGCTTGTTGCAGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCG
AATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGGTAATTTTTTCCCCTATTAGTATAATTCATGTCGCTCCCATGAGAACTTTTGATAACTAATGTGGCTGCCTCGTTCCGAGTGAGCTGCAGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAAGAAGAATC
CCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGGTATGCCAACTATTCGCGTTGAAGTTATTTTCAAGATCTTTTGTCTCTGGTCACATGCATAAAAGGAAGTTGAGACGATGCAGACTTTTGTGACCATTCTCAAATTGGTACTCTTCGTTTTCGTGCATTTTACCT
TTTTTATCTTATCATTTTACAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTG
CTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGgtaattagtctattgccaactgcaaagctcgggtgtcaagaaaaagcctttgatcttatctctgctgtaatacctcggatggtttg
catgttcagatttatgtttaatacagttgaaagttctcgtatatatttattctatggatttcccattgttgcagCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTG
TAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTCGTTGACACACCTAAAGTTACACGAGGGGAATGCCAAATTACAGTGAGAATATAGAGATGAATGAAATAAATACAAATCTATGCCTTGATCA
Intron 11 GTGCAAACTC ... TGATGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.61 | 87.1 | 12 | 8.8 |
| A2 | 16.26 | 74.2 | 12.3 | 16.6 |
| A3 | 18.03 | 71.8 | 16 | 15.8 |
| A4 | 14.8 | 63.4 | 5 | 17.1 |
| A5 | 15.64 | 33.8 | 5 | 7.8 |
| A6 | 16.19 | 391.7 | 60 | 92.8 |
| A7 | 15.68 | 564.2 | 66 | 145.5 |
| A8 | 16.21 | 707.4 | 82 | 194.1 |
| A9 | 15.86 | 434.2 | 54 | 111.1 |
| A10 | 13.7 | 331.4 | 58 | 47.6 |
>TRINITY_DN44183_c0_g1_i9 from sample A6 / Example spliced isoformGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATAGTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTG
TGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATGCTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCT
GGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAAGGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGAC
AGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAACTAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCA
GTATGCACGGTAACAGGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAAGTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTT
GAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGGTAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGA
ATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGATTATGGAGTTGATGAATCACGACAAAAAAACATTGGTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTT
TTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTGAGGTGTTGACAGAAGTGCAAAACTTGATCAAACGGAATGAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACC
CTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGTCTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGATACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTA
TCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATATGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACCGCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGAC
TTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAAGTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAA
GGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTATATAGTATATGATGCTGCTCAGGTGAAGCTGCAGTTTCTGTTGAAGGTACGCTTCCGATA
CAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATACAGTTGAAAGTTCTCGTATA
TATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATGACAGATTTTTAATAGTAGTT
ATTGAGATTTTCTCTATATAAATCAAATTATCTCGTTGACACACCTAAAGTTACACGAGGGGAATGCCAAATTACAGTGAGAATATAGAGATGAATGAAATAAATACAAATCTATGCCTTGATCACAGTTTAAAAAG
>TRINITY_DN44183_c0_g1_i2 from sample A6 / Example unspliced isoform:TATCACTGTAACCTTTGCACGCTCCGAGCATTGAAGCCCTAAGCAGTTCGTTTCGATGGCGAATCCTCCAAAGCCATGGAAGGTCGAGTACGCCAAATCTTCAAGATCGACATGCAAGGCATGCAAACAGACCATCAACAAAGACGTGCTCAGAATCGCCAAGATGGTCCCTGCTACACAGTTCGATGGCTTCATGCCTT
TGTGGAATCATGCAGGATGTATTCTAAAGAAACAAAGTCAATTTCAAACATTAAATGATGTGGAGGGGGTTGACACAGTTAGATGGGAAGATCAACAAAAACTTCGGAAGTATGTGGAAGGTATTGGTGAAGGTTCTATGTTGGGTTCTGGTGGAAGTACTGCAGATGATGGCAGCAATGAGTATGCCATAGAGAATGCT
AAAAGCTCGCGTGCAGTGTGTAAAGGCTGTGACAAAAAGATAGGAAAAGGGGAGGTCCGCATTGCGACAATGACTGAATCAGATAATCCCAAGTTTCGTGGGAAAGTGCCAGCCTGGCGTCATGCCAAATGCTTCCTAGAGAATGGCTGGTGGACTTGTCCAATGGAGAAGATGCCCGGTTGGGACAGCCTGACTGATGA
AGATAAGGAATCTGTTCAAAGCATTGCAAAACCATACATTCAGGATACCAACAAAGATTTGAATAATGATGTAGGTGAGCGACTACAAGAACCTCTTCGGGAAGGGAAATCCAAGAAGCGTAAGCCTGATGAACGTGAAGCATTGCCTAGTAAAAAGCCAAATAAGGCACACTCAAATAAGGATTCTGTGAAATTAGATA
GTAACGTGGGAGAAAGATATTCAGCAAAAGCCACAGAGTTGGAATTGAAGCTGGAAAATCAAACAAAAGCATTGTGGAATATCAAAGATGACTTACAGAAGCATGTCAAAATTGCAGAGTTGCGTGAGATGCTTGAAGCTAATGGCCAAGACCCAAGTGGTTCAGAATACGAGTTGAGGGAACGATGTGCTGATGGTATG
CTTTTTGGAGCCCTTGGAAAGTGTCCATTGTGTGGAGGTGGATTGGAATATTCTGATGGTCGGTACAAATGTCTGGATTATCTGTCTGCATGGAGCAAATGTTCTTTCTCCACTACCAATCCTGAACGTGTTAAAGGGAAATGGAAAATTCCCAAGGAAACAGATAACAAATATCTTAGTGAGTGGTTTACATCACAAAA
GGGAAAGAAGCTTGTTCGGATTCTGCCTCCACAGTATCCTCAAAACTCCTTGGAAAATGAAGGCACAATGGGACAGTCACAAAATTCTGGAACTGCCTTCTTGAAGGGTTTATCAGTGGCAATTGTTGGAAAGCCTAAGGAATCCTGGGTGGAATGGAAGAGGAAACTTGAGGCAGCTGGTGGAAAACTCTTGAACGAAC
TAACACGAAATGCTTACTGTTTGATTACAAATGAAAACGAAATTGATATGTACAAGTCTGAGATAGAAAAAGCAGTGAAAATGAAAGTACCGGTTCTTAAGGAGTCCTTTCTAGTTGACTGCCTGGAAAAGAAAAAGCGGCTCCCAAAGGACCAATATAGAATTGAAGAAGCCCCAAGGTCAGATTTGGTTAAAGTCAAA
GTCAAAGGTAGAAGTTCTGTCCACGAAGAATCGGGTTTGCAGGAAACAGGTCACATCCTTGAAGAAGAGAAAAGTATCTACAATACAACTCTGAATATGTCTGACTTATCGACTGGCATCAACAGCTATTATATTCTTCAAGTTATTGAGGATGACAAAAAGGCAGTTTGTCACGTTTTCCGCAAGTGGGGTCGAGTTGG
TAACAGTAGAGTTGGAGGCCAGAAATTGGAGAAGATGCCAAAATTGGCTGCAATTCATGAATTCAAACGATTGTTTCTTGAAAAGACCGGAAATGAATGGGAAAGCTGGGAAAACAAAGACAATTTTGAGAAGCAGCCTGGGAAGTTTTTCCCTCTGGAAATTGATTATGGAGTTGATGAATCACGACAAAAAAACATTG
GTTCATTGGCTGCAAAGAGCAAGCTTGATCCTCGGGTGATAGACCTCATGAAGATGCTTTTTGATCTTGAAACATATAGGGCTGCCATGATGGAGTTTGAGATTAACATGTCAGAAATGCCACTTGGGAAGCTGAGTAAAAGTAACATCCAAAAAGGGTTTGAGGTGTTGACAGAAGTGCAAAACTTGATCAAACGGAAT
GAACCTGATGTTGGTCTCAAAGAGAGCTTGATCATTGATGCTAGCAATCGATTTTTTACCCTTATTCCATCAGTGCATCCCCATATTATTCGAGACGAAGATGACCTGAAATCAAAGATTCAAATGTTGGAGACTCTTCGGGACATTGAAATAGCTTCTGGTCTTATTAACTTTGAAAATAATGACGAGGATCCTTTGGA
TACCAATTATAAGAAACTTCACTGCAATATCTCTCCGTTACCTCATGACAGCTCTGATTATCAACTTATTAAGAAATACCTTGAAACTACCCATGCTCCAACACACAAGGAATGGACCCTTGAACTGGAGGACGCTTATGCAATTGATAGAGAAGGAGAATATGATGCATACTTTCCTCATAAAAGCAAACTTAGAAACC
GCATGCTGCTTTGGCATGGTTCACGCGTCACGAACTTTGTTGGTATCCTGAGTCAAGGACTTCGAATAGCTCCACCGGAGGCTCCAGCGACTGGATATATGTTTGGTAAAGGTCTTTACTTTGCAGACCTAGTGAGCAAGAGTGCGCAGTATTGCTACACACACAAGAAGAATCCCATGGGATTGATGCTGCTCAGTGAA
GTGGCACTGGGAGAAGTTCATGAGCTAAAAAGTGCAAAGTATATGGAAAAGCCTCCCAAAGGAAAGCATTCAACTAAGGGCGTTGGTAAGACAAAGCCATTGGAAACAGAATATGAACGCTGGGGGGATGATGTGTCTGTACCTTGTGGTCATCCTGTACCTTCGGGTGTTAAGAACACTGATTTACTATACAATGAGTA
TATAGTATATGATGCTGCTCAGgtgcaaactcgaaagcctcagcttcctccatttaatttcggcagatgggctgctgtttgatcttttagacaagaaatctgcttgaaaaatgtagtccggataagtggaattgttcttttggatgacatttactgaaagggttttttttcatgatgttcagGTGAAGCTGCAGTTTCTG
TTGAAGGTACGCTTCCGATACAAGCGATAATTGCATTCGTGAGATTGGCAGATCCCAGATATGGCTAGATTTTTTGGTTTCGAATCTTCGGGTAATTAGTCTATTGCCAACTGCAAAGCTCGGGTGTCAAGAAAAAGCCTTTGATCTTATCTCTGCTGTAATACCTCGGATGGTTTGCATGTTCAGATTTATGTTTAATA
CAGTTGAAAGTTCTCGTATATATTTATTCTATGGATTTCCCATTGTTGCAGCGATTTTGTGGAGGATGATGTGCATATGTTGAAACCGATATTTATACATACAGGAATATGTACAGTTTTTAATGTTTTTCTCAAGAAACCTTTTGGTGCCATTCTGGGGCGACATTTTCCTTGCTGTAAGCCTAAATGCTTTGTCTATG
ACAGATTTTTAATAGTAGTTATTGAGATTTTCTCTATATAAATCAAATTATCTCGTTGACACACCTAAAGTTACACGAGGGGAATGCCAAATTACAGTGAGAATATAGAGATGAATGAAATAAATACAAATCTATGCCTTGATCACAGTTTAAAAAG