NA ----> NA

Intron 1 GTAATCTCTT ... TCTCGATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20	2	0	1
A2	100	0	4	3
A3	23	3.4	1	1
A4	-1	0	0	0
A5	100	0	1	0
A6	49.76	13	8.8	17
A7	34.55	18	4	15
A8	46.67	12	3	18
A9	43.59	11	9	8
A10	60	9	10	17

>TRINITY_DN43420_c0_g2_i4 from sample A6 / Example spliced isoform

ATAAATTGTAGTAGTCTACGGATTCGACGATTTGTCCGGGAAGCCCCGGCTCTCCCTTCTGGCCAAATCATCTAATCCGGCTTGCGTGGGATAACTGGCATTTAAATCGCCCCGCTTTTCTGTGCATTGGAAAAATTCAGGATGGTGGAAAAATGGACACTGTGCATTGAAGTGTCATGTTATCCGAACCCAGGACAAGC
AACCATTGCTTACATTTTGTATAATAATGCTACAAATCAAGTGTTTCAGCGAAAAAGGGATGTATGCGGAAGGACTACAGACAATGAAGCATATTATATTGCTCTCATTGAAGGTCTATAAACAATGATAAAGCATGGAGCCAATGGCATAAGTGTCTTCATGAACTCTGAACTTGTATGCAACCAAATGAAAGGCACAG
ACCAAGTCAAAAAGGAAAATTTAAAAATGTTTCATTGGGAAGGTAGAATCATTGCTTCCCAATTTGATTCCTTCACAATAAATCACCATAGAAATATTGACAGGATGTCCAGTGATATGATGTTTGCGGCAATGACAACAACCGGGGA

>TRINITY_DN43420_c0_g2_i1 from sample A6 / Example unspliced isoform:

ATAAATTGTAGTAGTCTACGGATTCGACGATTTGTCCGGGAAGCCCCGGCTCTCCCTTCTGGCCAAATCATCTAATCCGGCTTGCGTGGGATAACTGGCATTTAAATCGCCCCGCTTTTCTGgtaatctctttttttgatttggttataaaaactggcaaaagcatagttttaccagtttattgtggaattatgccatga
aactgtgccctcaaggattttgggccattttaaaacgatccagatcatcaaaattccaaaaaaaatgacccaaagaaaataaaactgtgcctcgccgaaaaaccactcaccgaaataccgaagcaatttgatcgccccatatcacgcgctgaatcgtagcccaggtccctcctcgaactacggttttcggttgaccaaaa
cggtaacagcccgattggtaggctccacttgcacctcgagcttctactggctgaatgcactcaatgaatggccaactctgcatgtaatcttcttcccactggacgcattcgacccctgcattcgaaccaggtagaggatcgatagccctgtttttccttcgaaccaggttgaggaggagcagctcgcgattaccagcttg
aggatccgcgaagacagtctcgatcagTGCATTGGAAAAATTCAGGATGGTGGAAAAATGGACACTGTGCATTGAAGTGTCATGTTATCCGAACCCAGGACAAGCAACCATTGCTTACATTTTGTATAATAATGCTACAAATCAAGTGTTTCAGCGAAAAAGGGATGTATGCGGAAGGACTACAGACAATGAAGCATATT
ATATTGCTCTCATTGAAGGTCTATAAACAATGATAAAGCATGGAGCCAATGGCATAAGTGTCTTCATGAACTCTGAACTTGTATGCAACCAAATGAAAGGCACAGACCAAGTCAAAAAGGAAAATTTAAAAATGTTTCATTGGGAAGGTAGAATCATTGCTTCCCAATTTGATTCCTTCACAATAAATCACCATAGAAAT
ATTGACAGGATGTCCAGTGATATGATGTTTGCGGCAATGACAACAACCGGGGA