sp|P10978|POLX_TOBAC ----> Retrovirus-related Pol polyprotein from transposon TNT 1-94
Intron 1 GTGTTATTGG ... TTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.57 | 26 | 15 | 22 |
| A2 | 42.31 | 30 | 20 | 24 |
| A3 | 50.46 | 27 | 17 | 38 |
| A4 | 54.84 | 7 | 13 | 4 |
| A5 | 58.97 | 8 | 8 | 15 |
| A6 | 48.13 | 194 | 134 | 226 |
| A7 | 49.12 | 216 | 166 | 251 |
| A8 | 49.24 | 234 | 162 | 292 |
| A9 | 48.84 | 232 | 163 | 280 |
| A10 | 51.34 | 173 | 166 | 199 |
>TRINITY_DN41100_c2_g2_i6 from sample A6 / Example spliced isoformCGTAACACAGCGATTTTCACTGCACTTGTGATGTTGAAACAATCCAAAAACGAGCCGAGCCGAGCCGAGTCAGGAAAGTTTGGGGCGTGGGATGAAATCAATGGCCATGCGCGGGGCAGCACTTTTCATGTCGAAACAACCCATAGCCGAGCCGAGCCAAGCCAAGATAAGTTTGGGGAGTGGGATGAAATCAATGGCCA
TGGGCGGAACTGGAACAGAAGCTGAGGCGACTACGCCTACGGTGGCATCATCGACTATTAGTACAGAAAGTCCTAGTCAGAAGAAGGACCTTCACCAATCCTCCAAAGCCAAGGTCAAGGCCAGACGCTCTTTACACAAAAATCTCATTCTCATCAAGGACGATGACCACGGCCAGGACAATTCCTCAGCTGCTGCTGAT
AATGAAGACCAGCGGGTGAATAAAGTGAAATCGAAGGAGGGACGGGGTTGGTATGTCTATCTCATTATTTCAGCAGACATGCGCAAGACGTATGTGGGTGTTACCACAGATTTTGAACGCAGGTTAAAGCAACATAATGGAGAATTGAATGGTGGAGCTAAAGCATCTCGAGCAGGCAGGCCATGGCAATGTGTGTGCCT
GGTGCATGGTTTCGAAGGCCGCAGTGAAGGTAGAAGTAAGCCCGTGCAAATATTTCAAGCATGCGGATTTGAATGGAAGTGGAAGTACTTTTCTCGAAATTCATCTCGTAAGTCAAGGCAATTGGACAATTTAAACAGGCAGATGGGATATTTTTCATCCCCTCTTGTTGAACATAGACAAGCAGCACTAGATAGAGTCA
AGGAGTCCTTAGATTGCCGACACTTAAAAATCCAGTGGCAAGGGCAATTATCATCTCTGTCAATGTAAATGATAAAATTATCTGCAAGTTGGGCATTGTATTCACTTCGCAAATTTGTGTTTTAATCCAAGATAATGCCTTGATGTCTCGTCAAGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCCATTG
GGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCAATTGTTCTTTCTGTCCATTTTGACATGCAATCCTACTGTCGTAAAATGTTACTTTTTATTAATGAAGAATAAGCTCG
>TRINITY_DN41100_c2_g2_i3 from sample A6 / Example unspliced isoform:CGTAACACAGCGATTTTCACTGCACTTGTGATGTTGAAACAATCCAAAAACGAGCCGAGCCGAGCCGAGTCAGGAAAGTTTGGGGCGTGGGATGAAATCAATGGCCATGCGCGGGGCAGCACTTTTCATGTCGAAACAACCCATAGCCGAGCCGAGCCAAGCCAAGATAAGTTTGGGGAGTGGGATGAAATCAATGGCCA
TGGGCGGAACTGGAACAGAAGCTGAGGCGACTACGCCTACGGTGGCATCATCGACTATTAGTACAGAAAGTCCTAGTCAGAAGAAGGACCTTCACCAATCCTCCAAAGCCAAGGTCAAGGCCAGACGCTCTTTACACAAAAATCTCATTCTCATCAAGGACGATGACCACGGCCAGGACAATTCCTCAGCTGCTGCTGAT
AATGAAGACCAGCGGGTGAATAAAGTGAAATCGAAGGAGGGACGGGGTTGGTATGTCTATCTCATTATTTCAGCAGACATGCGCAAGACGTATGTGGGTGTTACCACAGATTTTGAACGCAGGTTAAAGCAACATAATGGAGAATTGAATGGTGGAGCTAAAGCATCTCGAGCAGGCAGGCCATGGCAATGTGTGTGCCT
GGTGCATGGTTTCGAAGGCCGCAGTGAAGGTAGAAGTAAGCCCGTGCAAATATTTCAAGgtgttattggtgttacaaatgggttcattttagccagtttgagatccataacaaagccttccacatgcgctgttaatcttgagccactttattgatcatgttggtgcttgtattttgtacagCATGCGGATTTGAATGGAA
GTGGAAGTACTTTTCTCGAAATTCATCTCGTAAGTCAAGGCAATTGGACAATTTAAACAGGCAGATGGGATATTTTTCATCCCCTCTTGTTGAACATAGACAAGCAGCACTAGATAGAGTCAAGGAGTCCTTAGATTGCCGACACTTAAAAATCCAGTGGCAAGGGCAATTATCATCTCTGTCAATGTAAATGATAAAAT
TATCTGCAAGTTGGGCATTGTATTCACTTCGCAAATTTGTGTTTTAATCCAAGATAATGCCTTGATGTCTCGTCAAGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCCATTGGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCAATTGTTCTTTCTGTCCATTTTGACATGCAATCCTAC
TGTCGTAAAATGTTACTTTTTATTAATGAAGAATAAGCTCG
Intron 2 GTAGAAGTAA ... TTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.84 | 37 | 25 | 22 |
| A2 | 39.84 | 37 | 25 | 24 |
| A3 | 36.97 | 52 | 23 | 38 |
| A4 | 37.04 | 17 | 16 | 4 |
| A5 | 46.67 | 12 | 6 | 15 |
| A6 | 37.25 | 315 | 148 | 226 |
| A7 | 36.17 | 382 | 182 | 251 |
| A8 | 38.22 | 388 | 188 | 292 |
| A9 | 38.18 | 378 | 187 | 280 |
| A10 | 44.2 | 250 | 197 | 199 |
>TRINITY_DN41100_c2_g2_i7 from sample A6 / Example spliced isoformCGTAACACAGCGATTTTCACTGCACTTGTGATGTTGAAACAATCCAAAAACGAGCCGAGCCGAGCCGAGTCAGGAAAGTTTGGGGCGTGGGATGAAATCAATGGCCATGCGCGGGGCAGCACTTTTCATGTCGAAACAACCCATAGCCGAGCCGAGCCAAGCCAAGATAAGTTTGGGGAGTGGGATGAAATCAATGGCCA
TGGGCGGAACTGGAACAGAAGCTGAGGCGACTACGCCTACGGTGGCATCATCGACTATTAGTACAGAAAGTCCTAGTCAGAAGAAGGACCTTCACCAATCCTCCAAAGCCAAGGTCAAGGCCAGACGCTCTTTACACAAAAATCTCATTCTCATCAAGGACGATGACCACGGCCAGGACAATTCCTCAGCTGCTGCTGAT
AATGAAGACCAGCGGGTGAATAAAGTGAAATCGAAGGAGGGACGGGGTTGGTATGTCTATCTCATTATTTCAGCAGACATGCGCAAGACGTATGTGGGTGTTACCACAGATTTTGAACGCAGGTTAAAGCAACATAATGGAGAATTGAATGGTGGAGCTAAAGCATCTCGAGCAGGCAGGCCATGGCAATGTGTGTGCCT
GGTGCATGGTTTCGAAGGCCGCAGTGAAGCATGCGGATTTGAATGGAAGTGGAAGTACTTTTCTCGAAATTCATCTCGTAAGTCAAGGCAATTGGACAATTTAAACAGGCAGATGGGATATTTTTCATCCCCTCTTGTTGAACATAGACAAGCAGCACTAGATAGAGTCAAGGAGTCCTTAGATTGCCGACACTTAAAAA
TCCAGTGGCAAGGGCAATTATCATCTCTGTCAATGTAAATGATAAAATTATCTGCAAGTTGGGCATTGTATTCACTTCGCAAATTTGTGTTTTAATCCAAGATAATGCCTTGATGTCTCGTCAAGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCCATTGGGTATTTTTTCAAAAACTTACTCAATGAAT
GCACCAAGTTCAATTGTTCTTTCTGTCCATTTTGACATGCAATCCTACTGTCGTAAAATGTTACTTTTTATTAATGAAGAATAAGCTCG
>TRINITY_DN41100_c2_g2_i3 from sample A6 / Example unspliced isoform:CGTAACACAGCGATTTTCACTGCACTTGTGATGTTGAAACAATCCAAAAACGAGCCGAGCCGAGCCGAGTCAGGAAAGTTTGGGGCGTGGGATGAAATCAATGGCCATGCGCGGGGCAGCACTTTTCATGTCGAAACAACCCATAGCCGAGCCGAGCCAAGCCAAGATAAGTTTGGGGAGTGGGATGAAATCAATGGCCA
TGGGCGGAACTGGAACAGAAGCTGAGGCGACTACGCCTACGGTGGCATCATCGACTATTAGTACAGAAAGTCCTAGTCAGAAGAAGGACCTTCACCAATCCTCCAAAGCCAAGGTCAAGGCCAGACGCTCTTTACACAAAAATCTCATTCTCATCAAGGACGATGACCACGGCCAGGACAATTCCTCAGCTGCTGCTGAT
AATGAAGACCAGCGGGTGAATAAAGTGAAATCGAAGGAGGGACGGGGTTGGTATGTCTATCTCATTATTTCAGCAGACATGCGCAAGACGTATGTGGGTGTTACCACAGATTTTGAACGCAGGTTAAAGCAACATAATGGAGAATTGAATGGTGGAGCTAAAGCATCTCGAGCAGGCAGGCCATGGCAATGTGTGTGCCT
GGTGCATGGTTTCGAAGGCCGCAGTGAAGgtagaagtaagcccgtgcaaatatttcaaggtgttattggtgttacaaatgggttcattttagccagtttgagatccataacaaagccttccacatgcgctgttaatcttgagccactttattgatcatgttggtgcttgtattttgtacagCATGCGGATTTGAATGGAA
GTGGAAGTACTTTTCTCGAAATTCATCTCGTAAGTCAAGGCAATTGGACAATTTAAACAGGCAGATGGGATATTTTTCATCCCCTCTTGTTGAACATAGACAAGCAGCACTAGATAGAGTCAAGGAGTCCTTAGATTGCCGACACTTAAAAATCCAGTGGCAAGGGCAATTATCATCTCTGTCAATGTAAATGATAAAAT
TATCTGCAAGTTGGGCATTGTATTCACTTCGCAAATTTGTGTTTTAATCCAAGATAATGCCTTGATGTCTCGTCAAGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCCATTGGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCAATTGTTCTTTCTGTCCATTTTGACATGCAATCCTAC
TGTCGTAAAATGTTACTTTTTATTAATGAAGAATAAGCTCG
Intron 3 GTAGAAGTAA ... ATATTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.8 | 37 | 25 | 26 |
| A2 | 42.64 | 37 | 25 | 30 |
| A3 | 30.2 | 52 | 18 | 27 |
| A4 | 34.62 | 17 | 11 | 7 |
| A5 | 33.33 | 12 | 4 | 8 |
| A6 | 31.3 | 315 | 93 | 194 |
| A7 | 31.66 | 382 | 138 | 216 |
| A8 | 31.69 | 388 | 126 | 234 |
| A9 | 32.62 | 378 | 134 | 232 |
| A10 | 38.57 | 250 | 141 | 173 |
>TRINITY_DN41100_c2_g2_i7 from sample A6 / Example spliced isoformCGTAACACAGCGATTTTCACTGCACTTGTGATGTTGAAACAATCCAAAAACGAGCCGAGCCGAGCCGAGTCAGGAAAGTTTGGGGCGTGGGATGAAATCAATGGCCATGCGCGGGGCAGCACTTTTCATGTCGAAACAACCCATAGCCGAGCCGAGCCAAGCCAAGATAAGTTTGGGGAGTGGGATGAAATCAATGGCCA
TGGGCGGAACTGGAACAGAAGCTGAGGCGACTACGCCTACGGTGGCATCATCGACTATTAGTACAGAAAGTCCTAGTCAGAAGAAGGACCTTCACCAATCCTCCAAAGCCAAGGTCAAGGCCAGACGCTCTTTACACAAAAATCTCATTCTCATCAAGGACGATGACCACGGCCAGGACAATTCCTCAGCTGCTGCTGAT
AATGAAGACCAGCGGGTGAATAAAGTGAAATCGAAGGAGGGACGGGGTTGGTATGTCTATCTCATTATTTCAGCAGACATGCGCAAGACGTATGTGGGTGTTACCACAGATTTTGAACGCAGGTTAAAGCAACATAATGGAGAATTGAATGGTGGAGCTAAAGCATCTCGAGCAGGCAGGCCATGGCAATGTGTGTGCCT
GGTGCATGGTTTCGAAGGCCGCAGTGAAGCATGCGGATTTGAATGGAAGTGGAAGTACTTTTCTCGAAATTCATCTCGTAAGTCAAGGCAATTGGACAATTTAAACAGGCAGATGGGATATTTTTCATCCCCTCTTGTTGAACATAGACAAGCAGCACTAGATAGAGTCAAGGAGTCCTTAGATTGCCGACACTTAAAAA
TCCAGTGGCAAGGGCAATTATCATCTCTGTCAATGTAAATGATAAAATTATCTGCAAGTTGGGCATTGTATTCACTTCGCAAATTTGTGTTTTAATCCAAGATAATGCCTTGATGTCTCGTCAAGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCCATTGGGTATTTTTTCAAAAACTTACTCAATGAAT
GCACCAAGTTCAATTGTTCTTTCTGTCCATTTTGACATGCAATCCTACTGTCGTAAAATGTTACTTTTTATTAATGAAGAATAAGCTCG
>TRINITY_DN41100_c2_g2_i6 from sample A6 / Example unspliced isoform:CGTAACACAGCGATTTTCACTGCACTTGTGATGTTGAAACAATCCAAAAACGAGCCGAGCCGAGCCGAGTCAGGAAAGTTTGGGGCGTGGGATGAAATCAATGGCCATGCGCGGGGCAGCACTTTTCATGTCGAAACAACCCATAGCCGAGCCGAGCCAAGCCAAGATAAGTTTGGGGAGTGGGATGAAATCAATGGCCA
TGGGCGGAACTGGAACAGAAGCTGAGGCGACTACGCCTACGGTGGCATCATCGACTATTAGTACAGAAAGTCCTAGTCAGAAGAAGGACCTTCACCAATCCTCCAAAGCCAAGGTCAAGGCCAGACGCTCTTTACACAAAAATCTCATTCTCATCAAGGACGATGACCACGGCCAGGACAATTCCTCAGCTGCTGCTGAT
AATGAAGACCAGCGGGTGAATAAAGTGAAATCGAAGGAGGGACGGGGTTGGTATGTCTATCTCATTATTTCAGCAGACATGCGCAAGACGTATGTGGGTGTTACCACAGATTTTGAACGCAGGTTAAAGCAACATAATGGAGAATTGAATGGTGGAGCTAAAGCATCTCGAGCAGGCAGGCCATGGCAATGTGTGTGCCT
GGTGCATGGTTTCGAAGGCCGCAGTGAAGgtagaagtaagcccgtgcaaatatttcaagCATGCGGATTTGAATGGAAGTGGAAGTACTTTTCTCGAAATTCATCTCGTAAGTCAAGGCAATTGGACAATTTAAACAGGCAGATGGGATATTTTTCATCCCCTCTTGTTGAACATAGACAAGCAGCACTAGATAGAGTCA
AGGAGTCCTTAGATTGCCGACACTTAAAAATCCAGTGGCAAGGGCAATTATCATCTCTGTCAATGTAAATGATAAAATTATCTGCAAGTTGGGCATTGTATTCACTTCGCAAATTTGTGTTTTAATCCAAGATAATGCCTTGATGTCTCGTCAAGGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCCATTG
GGTATTTTTTCAAAAACTTACTCAATGAATGCACCAAGTTCAATTGTTCTTTCTGTCCATTTTGACATGCAATCCTACTGTCGTAAAATGTTACTTTTTATTAATGAAGAATAAGCTCG