sp|E9L7A5|PAT_PETHY ----> Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
Intron 1 GTAGGTTCTA ... ATTGGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.44 | 15 | 20 | 4 |
| A2 | 40 | 9 | 6 | 6 |
| A3 | 41.18 | 20 | 22 | 6 |
| A4 | 37.78 | 14 | 6 | 11 |
| A5 | 35.71 | 9 | 8 | 2 |
| A6 | 31.88 | 47 | 32 | 12 |
| A7 | 23.43 | 67 | 33 | 8 |
| A8 | 25.52 | 54 | 30 | 7 |
| A9 | 28.83 | 58 | 35 | 12 |
| A10 | 26.57 | 76 | 43 | 12 |
>TRINITY_DN113956_c0_g1_i4 from sample A1 / Example spliced isoformACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGC
AGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTAC
TAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCC
ACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTTTATGAGCATATAACATTTGATTCAGCGGTACACATCAGTTTGGCTTCCCTTTCTGGCATGTTGGAGAGAACCATTATTACTTCATCCATATCCAAGACATATAGT
GTTACAGGTAGTTTCAGCATATACGAAGATATGCTTATTTCTTTCAAGTAGAAAGTTGGTTCTCTAATGTTGACCCTGAACTTGTTGGAAATGATATGTTATGTTGATCTGTTGACATAGAGTACCAGCTAGATTTCAAAGATCTTTTTCTTAAAACTTGAGACCAATAGGATGAATGATTTACCTGCCACCAGCTTTTT
GTTATCAAAGCAATCTGTTTTGTGGCTGAAATGGCGGATACACTACA
>TRINITY_DN113956_c0_g1_i11 from sample A1 / Example unspliced isoform:ACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGC
AGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTAC
TAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGgtaggttctatgttaagtcctttttagagaaatgtgttgtgagcaatga
aatgatacataagacaataatctgcaatcattccctttcctctttgttgttgattataaatttcaaattttctcctcttagctgattataaattttcatggatgagatcatttcttacaatcaatggtcataatcataatgtacttaatgtttatagccttgtatatttgaattagaattgaataaggtgattaaaaaac
taaataaagtaattttttagttgcatggtcaattgcaattatgttaattgctaccatattcagttagttctcacaagtcacaccttttgtatctcatttagtttacatattgaacatatctatcaactctctctcagccactctgtgttttactgttcttatttttaatatattccaaataaggtagatttgtcgaactt
ttcattatttctgttgaataacatattttgcaagcattggcacagCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTTTATGAGCATAT
AACATTTGATTCAGCGGTACACATCAGTTTGGCTTCCCTTTCTGGCATGTTGGAGAGAACCATTATTACTTCATCCATATCCAAGACATATAGTGTTACAGGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGG
AGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAG
TTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGC
CACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTG
ATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTAT
Intron 2 GTGAGCAAAA ... TACATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.8 | 33.8 | 17 | 12 |
| A2 | 26.2 | 22 | 7 | 8 |
| A3 | 27.83 | 29.5 | 13 | 9 |
| A4 | 24.76 | 24.6 | 7 | 9 |
| A5 | 24.43 | 17.5 | 6 | 5 |
| A6 | 28.38 | 99.6 | 45 | 31 |
| A7 | 22.85 | 136.5 | 39 | 38 |
| A8 | 26.72 | 124.5 | 42 | 46 |
| A9 | 21.87 | 102.9 | 29 | 27 |
| A10 | 20.66 | 148.5 | 51 | 22 |
>TRINITY_DN105625_c0_g1_i10 from sample A3 / Example spliced isoformCCAAATTCCATGCATCATTATTTGCAGAGCGGGACGTCAAAACTTCGCAATTTTGTTGAAGAACTATTACCCAATGATTTGCCTCCGAATTTATGCAAAAACTATTTGTTGGCTTCATTTAATGTTTTGTAGATAGACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGG
GGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGCAGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTAT
TTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTACTAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGT
TGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTTTATGAGCATATAA
CATTTGATTCAGCGGTACACATCAGTTTGGCTTCCCTTTCTGGCATGTTGGAGAGAACCATTATTACTTCATCCATATCCAAGACATATAGTGTTACAGGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAG
GCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTT
GATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCA
CTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGAT
TAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTATACATTTTAATTCCATCAACTTACATAAGAGAAGCCAATGTAAGGGCCGTG
>TRINITY_DN105625_c0_g1_i9 from sample A3 / Example unspliced isoform:TATGAGCATATAACATTTGATTCAGCGGTACACATCAGTTTGGCTTCCCTTTCTGGCATGTTGGAGAGAACCATTATTACTTCATCCATATCCAAGACATATAGTGTTACAGGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGC
ACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGgtgagcaaaaaagaaactatttttgccaaattttccaaatttaatgtttaatgtgtaatttggctttcaaaatttccttgtttccttttccgtgatactttgctacattgtagGAGTATAATGAACGAAGAGA
TTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAG
AATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTG
AGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATT
GTATACATTTTAATTCCATCAACTTACATAAGAGAAGCCAATGTAAGGGCCGTG
Intron 3 GTATGACACT ... TTCATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.14 | 13 | 1.6 | 2.8 |
| A2 | 25.15 | 14.6 | 5.8 | 4 |
| A3 | 31.2 | 14.8 | 11.4 | 2 |
| A4 | 15.82 | 10.1 | 2.8 | 1 |
| A5 | 23.13 | 10.4 | 5.3 | 1 |
| A6 | 19.52 | 42.7 | 14.2 | 6.4 |
| A7 | 16.91 | 31.2 | 7.9 | 4.8 |
| A8 | 27.65 | 41.8 | 23.7 | 7.9 |
| A9 | 15.41 | 53.2 | 10.6 | 8.9 |
| A10 | 15.34 | 31.4 | 7.4 | 4 |
>TRINITY_DN35852_c0_g1_i2 from sample A6 / Example spliced isoformTTCCAAATAAGGTAGATTTGTCGAACTTTTCATTATTTCCGTTGAATAACATATTTTGCAAGCATTGGCACAGCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTG
CAATAACTGATGAAGTTTATGAGCATATAACATTTGATTCAGCGGTACACATCAGTTTGGCTTCCCTTTCTGGCATGTTGGAGAGAACCATTATTACTTCATCCATATCCAAGACATATAGTGTTACAGGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTC
ACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGC
AATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATA
TTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGT
ATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTATACATTTTAATTCCATCAACTTACATAAGAGAAGCCAATGTAAGGGCCGTGTCCTTGTTTGAAATACAAAGCATCAGCTATAAAAGTAAAG
>TRINITY_DN35852_c0_g1_i4 from sample A6 / Example unspliced isoform:ACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAgtatgacactttttctgaccaaattgtatttctatttatacttcagtacgagcctgagaaataactagctacttagcaatgtgatccatttttgaactc
tttccccatggagtcacctcaatcacatgcatgcactacatatttaaatgcaacctacagtgccagtactggaaacttatttttagtattgttatagcttatctaatgtgtaattcattttagGTTTATGAGCATATAACATTTGATTCAGCGGTACACATCAGTTTGGCTTCCCTTTCTGGCATGTTGGAGAGAACCAT
TATTACTTCATCCATATCCAAGACATATAGTGTTACAGGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATA
ATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAG
TTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGAT
ATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATT
CATTATGTAGATTGTATACATTTTAATTCCATCAACTTACATAAGAGAAGCCAATGTAAGGGCCGTGTCCTTGTTTGAAATACAAAGCATCAGCTATAAAAGTAAAG
Intron 4 GTTTATGAGC ... AGTGATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.5 | 10.4 | 13 | 13.8 |
| A2 | 60.57 | 7 | 14.6 | 6.8 |
| A3 | 45.73 | 14.1 | 14.9 | 8 |
| A4 | 40.62 | 11.9 | 10.3 | 6 |
| A5 | 51.15 | 6.6 | 10.5 | 3 |
| A6 | 60.01 | 22.9 | 42.9 | 25.1 |
| A7 | 46.79 | 30.6 | 31.2 | 22.5 |
| A8 | 38.76 | 74.2 | 41.8 | 51.5 |
| A9 | 48.96 | 50.3 | 53.4 | 42.6 |
| A10 | 40.59 | 51.8 | 31.6 | 39.1 |
>TRINITY_DN113956_c0_g1_i2 from sample A1 / Example spliced isoformACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGC
AGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTAC
TAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGGTAGGTTCTATGTTAAGTCCTTTTTAGAGAAATGTGTTGTGAGCAATGA
AATGATACATAAGACAATAATCTGCAATCATTCCCTTTCCTCTTTGTTGTTGATTATAAATTTCAAATTTTCTCCTCTTAGCTGATTATAAATTTTCATGGATGAGATCATTTCTTACAATCAATGGTCATAATCATAATGTACTTAATGTTTATAGCCTTGTATATTTGAATTAGAATTGAATAAGGTGATTAAAAAAC
TAAATAAAGTAATTTTTTAGTTGCATGGTCAATTGCAATTATGTTAATTGCTACCATATTCAGTTAGTTCTCACAAGTCACACCTTTTGTATCTCATTTAGTTTACATATTGAACATATCTATCAACTCTCTCTCAGCCACTCTGTGTTTTACTGTTCTTATTTTTAATATATTCCAAATAAGGTAGATTTGTCGAACTT
TTCATTATTTCTGTTGAATAACATATTTTGCAAGCATTGGCACAGCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTTGGAGGGTTGGG
TGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGT
TCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAG
AGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAA
TTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTAT
>TRINITY_DN113956_c0_g1_i8 from sample A1 / Example unspliced isoform:ACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGC
AGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTAC
TAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCC
ACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAgtttatgagcatataacatttgattcagcggtacacatcagtttggcttccctttctggcatgttggagagaaccattattacttcatccatatccaagacatatagt
gttacagGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCT
GAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTT
TAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATT
ATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTAT
Intron 5 GTTTATGAGC ... ACCCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.4 | 4 | 13 | 27 |
| A2 | 65 | 9.5 | 14.3 | 21 |
| A3 | 62.66 | 14.3 | 16 | 31 |
| A4 | 57.38 | 11.8 | 9.5 | 22 |
| A5 | 63.89 | 6.3 | 10.8 | 11 |
| A6 | 73.54 | 23.5 | 44 | 86 |
| A7 | 68.15 | 36.3 | 32.8 | 122 |
| A8 | 68.82 | 41.3 | 45.8 | 135 |
| A9 | 68.01 | 38 | 54.3 | 107 |
| A10 | 69.38 | 41 | 31.8 | 154 |
>TRINITY_DN105933_c0_g1_i6 from sample A2 / Example spliced isoformCATCATTATTTGCAGAGCGGGACGTCAAAACTTCGCAATTTTGTTGAAGAACTATTACCCAATGATTTGCCTCCGAATTTATGCAAAAACTATTTGTTGGCTTCATTTAATGTTTTGTAGATAGACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGA
AGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGCAGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACA
CTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTACTAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCC
ACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTAT
TGCAATAACTGATGAAGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATG
TAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCA
TATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACC
AATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCC
>TRINITY_DN105933_c0_g1_i7 from sample A2 / Example unspliced isoform:CATCATTATTTGCAGAGCGGGACGTCAAAACTTCGCAATTTTGTTGAAGAACTATTACCCAATGATTTGCCTCCGAATTTATGCAAAAACTATTTGTTGGCTTCATTTAATGTTTTGTAGATAGACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGA
AGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGCAGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACA
CTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTACTAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCC
ACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAgtttatgagcatataacatttgattcag
cggtacacatcagtttggcttccctttctggcatgttggagagaaccattattacttcatccatatccaagacatatagtgttacaggttggagggttgggtgggcaattgcacctgttgaaattgcatctgcaataaggaatattcatgtaaaactcacagattcagctccggcaccctttcagGAGGCTGCTTTGATT
GCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGC
AGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTG
CTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTG
CTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCC
Intron 6 GCTACGACAG ... AATCCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.57 | 23 | 25.5 | 23.5 |
| A2 | 46.86 | 17 | 16.5 | 13.5 |
| A3 | 48.83 | 39 | 43.5 | 31 |
| A4 | 47.92 | 22 | 21 | 19.5 |
| A5 | 51.83 | 13 | 15 | 13 |
| A6 | 51.2 | 60 | 72.5 | 53.5 |
| A7 | 48.13 | 80 | 86 | 62.5 |
| A8 | 53.92 | 75 | 97.5 | 78 |
| A9 | 51.53 | 99 | 118 | 92.5 |
| A10 | 50.92 | 93 | 113 | 80 |
>TRINITY_DN39647_c0_g1_i2 from sample A10 / Example spliced isoformACACAGCCAAATTCCATGCATCATTATTTGCAGAGCGGGACGTCAAAACTTCGCAATTTTGTTGAAGAACTATTACCCAATGATTTGCCTCCGAATTTATGCAAAAACTATTTGTTGGCTTCATTTAATGTTTTGTAGATAGACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAA
TGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGCAGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGC
AACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTACTAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGT
TTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTT
>TRINITY_DN39647_c0_g1_i1 from sample A10 / Example unspliced isoform:ACACAGCCAAATTCCATGCATCATTATTTGCAGAGCGGGACGTCAAAACTTCGCAATTTTGTTGAAGAACTATTACCCAATGATTTGCCTCCGAATTTATGCAAAAACTATTTGTTGGCTTCATTTAATGTTTTGTAGATAGACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAA
TGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGCAGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGTTTCTTGCAGACATGTTCA
AGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTACTAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAG
GCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGgctacgacagtccccacaatccaacagGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAAT
AACTGATGAAGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTT
GCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAA
TTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGA
ATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTATACATTTTAATT
CCATCAACTTACATAAGAGAAGCCAATGTAAGGGCCGTGTCCTTGTTTGAAATACAAAGCATCA
Intron 7 GTATGACACT ... AGTGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.26 | 11 | 0 | 13 |
| A2 | 50.26 | 7 | 5 | 7 |
| A3 | 38.22 | 13.5 | 6 | 8 |
| A4 | 33.44 | 12 | 2 | 6 |
| A5 | 32.38 | 6.5 | 3 | 3 |
| A6 | 52.45 | 23 | 8 | 25 |
| A7 | 41.62 | 29.5 | 4 | 21 |
| A8 | 41.05 | 73.5 | 12 | 51 |
| A9 | 46.78 | 49 | 2 | 43 |
| A10 | 42.63 | 52.5 | 2 | 39 |
>TRINITY_DN35852_c0_g1_i6 from sample A6 / Example spliced isoformCAATGATTTGCCTCCGAATTTATGCAAAAACTATTTGTTGGCTTCATTTAATGTTTTGTAGATAGACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGT
TGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGCAGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGG
TCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTACTAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAG
CAATTGTACTGAACAGCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATC
TGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTG
TTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCAT
CCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAAT
GTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTATACATTTTAATTCCATCAACTTACATAAGAGAAGCCAATGTAAGGGCCGTGTCCTTGTTTGAAAT
ACAAAGCATCAGCTATAAAAGTAAAG
>TRINITY_DN35852_c0_g1_i4 from sample A6 / Example unspliced isoform:ACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAgtatgacactttttctgaccaaattgtatttctatttatacttcagtacgagcctgagaaataactagctacttagcaatgtgatccatttttgaactc
tttccccatggagtcacctcaatcacatgcatgcactacatatttaaatgcaacctacagtgccagtactggaaacttatttttagtattgttatagcttatctaatgtgtaattcattttaggtttatgagcatataacatttgattcagcggtacacatcagtttggcttccctttctggcatgttggagagaaccat
tattacttcatccatatccaagacatatagtgttacagGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATA
ATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAG
TTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGAT
ATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATT
CATTATGTAGATTGTATACATTTTAATTCCATCAACTTACATAAGAGAAGCCAATGTAAGGGCCGTGTCCTTGTTTGAAATACAAAGCATCAGCTATAAAAGTAAAG
Intron 8 GTTGGAGGGT ... ACCCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.58 | 5.6 | 11.8 | 25.8 |
| A2 | 77.24 | 6.2 | 7.2 | 19.8 |
| A3 | 72.21 | 12.4 | 10.8 | 31 |
| A4 | 69.33 | 9.8 | 9.8 | 22 |
| A5 | 70.51 | 5 | 4.8 | 11 |
| A6 | 76.81 | 25.8 | 22.8 | 85.4 |
| A7 | 76.66 | 37 | 26.6 | 121.4 |
| A8 | 75.71 | 43.8 | 64.6 | 136.2 |
| A9 | 73.82 | 37.4 | 46.8 | 105.2 |
| A10 | 78.75 | 41.4 | 46.6 | 153.4 |
>TRINITY_DN96183_c0_g1_i6 from sample A4 / Example spliced isoformGAAGAACTATTACCCAATGATTTGCCTCCGAATTTATGCAAAAACTATTTGTTGGCTTCATTTAATGTTTTGTAGATAGACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTC
ACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGCAGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGTTTCTTGCAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGT
AAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTACTAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAG
CAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTAT
AATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAA
GTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGA
TATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGC
>TRINITY_DN96183_c0_g1_i7 from sample A4 / Example unspliced isoform:GGTGATTAAAAAACTAAATAAAGTAATTTTTTAGTTGCATGGTCAATTGCAATTATGTTAATTGCTACCATATTCAGTTAGTTCTCACAAGTCACACCTTTTGTATCTCATTTAGTTTACATATTGAACATATCTATCAACTCTCTCTCAGCCACTCTGTGTTTTACTGTTCTTATTTTTAATATATTCCAAATAAGGTA
GATTTGTCGAACTTTTCATTATTTCTGTTGAATAACATATTTTGCAAGCATTGGCACAGCACACATTCAATCTTTACACTTCGACTAATACAGGCTACGACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAA
gttggagggttgggtgggcaattgcacctgttgaaattgcatctgcaataaggaatattcatgtaaaactcacagattcagctccggcaccctttcagGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGG
GCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCC
TGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCT
TTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGC
Intron 9 GTAGGTTCTA ... GCTACGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.48 | 25.3 | 20 | 5.5 |
| A2 | 30.09 | 18 | 6 | 9.5 |
| A3 | 25.65 | 47 | 22 | 10.5 |
| A4 | 22.96 | 24.3 | 6 | 8.5 |
| A5 | 26.77 | 16.3 | 8 | 4 |
| A6 | 24.62 | 72.7 | 32 | 15.5 |
| A7 | 19.33 | 88.7 | 33 | 9.5 |
| A8 | 19.62 | 100.3 | 30 | 19 |
| A9 | 19.32 | 120 | 35 | 22.5 |
| A10 | 21.03 | 117.3 | 43 | 19.5 |
>TRINITY_DN113956_c0_g1_i1 from sample A1 / Example spliced isoformACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGC
AGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTAC
TAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTT
ATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTTTATGAGCATATAACATTTGATTCAGCGGTACACATCAGTTTGGCTTCCCTTTCTGGCATGTTGGAGAGAACCATTATTACTTCATCCATATCCAAGACATATAGTGTTACAGGTTGGAGGGTTGGGTGGGCAATTGCACCTGTTGAAAT
TGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGTTCATTTCAAGCCTCAGGGAGCTG
TCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAGAGTCAATGGGATGGAGCGAGGGG
TTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAATTCAAGATGGGTTTGGTTCAGTC
TATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTAT
>TRINITY_DN113956_c0_g1_i2 from sample A1 / Example unspliced isoform:ACATCAACAAAGCATAAGATATAACTATACTGGAAATTGCTGGGTAGAGACAGAGCAATGGAGGGGATGCTGTCGAAGCGAGCTTTGTCGCTGAAGCCCTCACCTATACAAGAGCTGTCTCACCTGGCTCAGCGTTGCAATGCCATCAACCTTGCCGAAGGTTTTCCGGACTTTCCTGCTCCGTCTGCAATAAAAGATGC
AGCAATAGCGGCCATAAGGGCGGATTTCAATCAATACAGACATGTTCAAGCCATATGCAACTATTTGGCATACACACTGAAGTTAACTCAGGGTTTGGATGTGGACCCTGTAAAAAATATTGCTATCTGTTGTGGTCAATCTGAAGCATTTGCAGCAGCAATTCTAGCTGTTGTAGATGAAGGGGATGAAATCTTGTTAC
TAGATCCAGCATATGAGACTTATGAAGCTTGCATTACTATGGCCGGAGGCACTCCAGTTTATGTTGCTCTTAATCCACCTTATTGGACTCTAGAAGTGGAAAAGCTTACAGCAGCTTTTACTCCACGGACAAAAGCAATTGTACTGAACAGgtaggttctatgttaagtcctttttagagaaatgtgttgtgagcaatga
aatgatacataagacaataatctgcaatcattccctttcctctttgttgttgattataaatttcaaattttctcctcttagctgattataaattttcatggatgagatcatttcttacaatcaatggtcataatcataatgtacttaatgtttatagccttgtatatttgaattagaattgaataaggtgattaaaaaac
taaataaagtaattttttagttgcatggtcaattgcaattatgttaattgctaccatattcagttagttctcacaagtcacaccttttgtatctcatttagtttacatattgaacatatctatcaactctctctcagccactctgtgttttactgttcttatttttaatatattccaaataaggtagatttgtcgaactt
ttcattatttctgttgaataacatattttgcaagcattggcacagcacacattcaatctttacacttcgactaatacaggctacgacagTCCCCACAATCCAACAGGAAAGGTTTTCAGCAAAGATGAGCTCACGGTTATTGCGGAACTATGCTGCAGGATGGACTGTATTGCAATAACTGATGAAGTTGGAGGGTTGGG
TGGGCAATTGCACCTGTTGAAATTGCATCTGCAATAAGGAATATTCATGTAAAACTCACAGATTCAGCTCCGGCACCCTTTCAGGAGGCTGCTTTGATTGCCCTTCAAAGTGTGCCAGAATACTTTGAAAGCCTGAGAATGGAGTATAATGAACGAAGAGATTTTATGGTGGATTTGCTGAATCGGGCTGGACTCAAAGT
TCATTTCAAGCCTCAGGGAGCTGTCTTTGTTTTTGCAGAATTGCCCGAGACATGTGCAATGAGTGATGTAGAATATGTAGCTGAGTTGATCAAAGTTGCAGGTGTAGCTGCAGTGCCTGGGTGTGGCTTCTTTCATACTAGAGAAAAGTTGTGTAGGCAAGAATCTTCTCAATCAATTTTAGGTCCTGTTACTAGACCAG
AGTCAATGGGATGGAGCGAGGGGTTTCATCCACTCAAGGATTACAGGAACAGGTATATTAGGTTTGCATATTGTAAAAGCAAAGCCACTCTTATGGCTGCTGCAGAGAAACTGAACAAATATAATGGCTCACTTGTATTGCATGAGATATAAAATCATTTGAGACCGATTTAGGGAATTATGATCTTTGAATACATTGAA
TTCAAGATGGGTTTGGTTCAGTCTATAATGTTGATTCCTCGGGGATTCCTCCAAGGTATGTTCTTACCAATTAGAGCTTTGATTGATTAGACCTTACTGCTACTTGACCAATGAAACTATAATTAGCTTTTGTGGCCAAATTTCTATTCATTATGTAGATTGTAT