NA ----> NA
Intron 1 GTAATTATCC ... TAATGGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.8 | 277.2 | 4 | 52 |
| A2 | 19.51 | 198 | 5 | 48 |
| A3 | 14.69 | 180 | 2 | 31 |
| A4 | 15.7 | 166.5 | 0 | 31 |
| A5 | 16.67 | 85 | 0 | 17 |
| A6 | 16.91 | 663.3 | 0 | 135 |
| A7 | 14.58 | 838 | 1.3 | 143 |
| A8 | 13.84 | 871.2 | 0 | 140 |
| A9 | 15.25 | 822.5 | 0 | 148 |
| A10 | 17.44 | 676.8 | 0 | 143 |
>TRINITY_DN109466_c3_g1_i3 from sample A2 / Example spliced isoformCTCAAATGAGCAAAAGCTGTTTAAAAGGCCTATTGGCAAAATCAGCTAAGTATGCTATATTAAGTTGATAGGCTAGTTGAGCTGTAATTGTTGCATATAAATTCTTTGTTAACGCCTTTGCTGCCTTTGACAGACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTACCAGTACA
TGCCGCAAGGTCCAAGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGCAACAACCATCAGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAATGACAAAG
GACTTTTTCACATTGTCTACTGGGAAGCGAAAGCGAGAGGAATTTCCTTCAAATTATCTGTCTGGCGGATACATCCCACAACAAGATGGAACAGGAGACTTTACACTGGAGTTTGCCAATTCAAAGGAGGCCACTTGCAAAGCAGATTCAGATTTATCAACCCAAAGTCTTGAGGGAAAAACTGCTAATTCCATTCGAAG
TGCTAAGGAAAGAAATGAGGCTGATTGTGTGATAGCAGCCATTATTAGAGCCAAGCACAATGCTCTCAAAATTCCTCAGCTTGATGGTGTTGATGATGTTGCAAATGAGGACTACAATACACCTGCAGAACAGGATCCACTAACTGTAAATAATGCTGCAAAGGAAGTTAAAACTGAAGTGAACGATGATGAAGAACCAC
CATTAAATGAAGATGATGATGATGAATTTGATGATATTGAACAAGGGGGAGACGAACCAAGCACAAATCATTTAGTTCTTGCTCAGTTTGAGAAGGTTACAAGAACCAAAAGTAGGTGGAAATGTACACTGAAGGATGGCATAATGCATTTGAACAACAAGGACATTCTTTTTGCCAAGGCAAATGGCGAGTTTGAGTTC
TAAGGTTTCTCCAAGCATTGAAGTGTAGAAAGTGTGCAGAGTGCACATAAACATGTTACTGCGTGTTGCTAAACATGCTTGCTACCTATTTTAACTGGGTTCACAATTCTTTGAGAAATTACCATCAAAACTCAAAAATTAGGAGCCTGATATTTTGAGAATATGTTAGTATAGGTGGTTTGATTTAAGGACAAATTCGT
CACGCCACTTTTCATATTTTTATTGTATTTTGTTCCTGCTTTTAGTTATAGGAGTCCATCAAGGGAATGCTTCCCTAGAGTTCATCTCCATCATTGTATAAATATGTTGGCGGCCAAACACATCCAAAATTTGTTGCTCTGCGATATGGCGAGATGTTCAGCATGTTCAATCAAAGTTCTGATCCTCATCTTTATAGCCC
AAACGGCTTTATTGCAGATTTTGTTTCTTATATTGAGCTATTCCTTCAAATTTCTTAAGAGAAAGATGAATGATTGTACAAGTTCTTTCATACTGTACACATTATTCTATACTGAAATGCATCACTTAATGAATAAAAAATGTTTATATGCATGGCAAAAAAA
>TRINITY_DN109466_c3_g1_i4 from sample A2 / Example unspliced isoform:CAGCTTGATGGTGTTGATGATgtaattatccttcgattttgaagatgcttctacaagtttataggattctgttaccatttataattttttttgtcaaggtgaagaaaagaaaacatatttacatattctaggtttgagaggaaattgatgcttacttctttctatttgttctaatggaaagGTTGCAAATGAGGACTACA
ATACACCTGCAGAACAGGATCCACTAACTGTAAATAATGCTGCAAAGGAAGTTAAAACTGAAGTGAACGATGATGAAGAACCACCATTAAATGAAGATGATGATGATGAATTTGATGATATTGAACAAGGGGGAGACGAACCAAGCACAAATCATTTAGTTCTTGCTCAGTTTGAGAAGGTATCTGATCACCTTAACAAT
CCTAATTATGCTCTCTAATTTTATTTTTAATTTTCACCGAAGAAATTATTTTTTATCCATAGACAGAACCAAAATTACATGGTTTAAAGGTCTTTCCCCTAGTCATAGTTGTCACTAAAATATCTTTAAAGATTCAAAAAGGTAAAAGATATTATCTCCCAGGACTCATAAAGTCAGAGATGAAAGAGAACTCTCTTCTA
ATATATACTGTTCATTGATAATTTACATCAAAATTTCAAATAGAAAGATCTATAGAGCTTCCATCATGGACCCCTAACATTGAAAAACTGGAAATTCCCAAAC
Intron 2 GTAAGTGTTT ... ATTACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.23 | 166 | 40 | 34 |
| A2 | 15.05 | 127 | 37 | 8 |
| A3 | 18.41 | 175 | 59 | 20 |
| A4 | 17.36 | 119 | 29 | 21 |
| A5 | 20 | 91 | 35 | 10.5 |
| A6 | 13.35 | 444.5 | 93 | 44 |
| A7 | 12.65 | 649 | 134 | 54 |
| A8 | 11.49 | 443 | 82 | 33 |
| A9 | 14.02 | 601 | 149 | 47 |
| A10 | 13.18 | 598 | 128 | 53.5 |
>TRINITY_DN121370_c0_g2_i6 from sample A1 / Example spliced isoformCTTTCCTTGTATATCTCATATCCGCTCAAGTCCCCGCATACTCATTCATTTCTTTCTTGCTTCTGCGTTTGCTCTTCCTCCTCCGCTGCCTCACACTGCCAGGATTCAATCAATCCAATAATAACCTACCCACTACTCTCACTGACTCTATTCTCTAACCCTAAAAACCCTAACCCACTCGAAGAAGCCAAGCCTGAAGC
GCCACTGCCACCGCACTGGAAGGGTTACGAGGAATTGCTAATCTCTGCTTCTTCTTCAGATGTCGACCTCCATCGTCTATGGGAGCGTGGTGGACGATGTCGTGAGAAAATTGCGAGATCAATTCCGGAGCGAAGGCGTTGAAGACACTGTCCTTACTGAACTCCAAGAGCTATGGGAATTAAAAATTATGCAAAGTGGA
GCAGTACAAGGTCCAATAGAAAGGGCAGCTAATGCTGCTCCTAGAGGAGCAAATGTTCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACGCCTACGGCAGAGATGCTTTTTCCGCCTACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTA
CCAGTACATGCCGCAAGGTCCAAGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGCAACAACCATCAGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAA
TGACAAAGGACTTTTTCACATTGTCTACTGGGAAGCGAAAGCGAGAGGAATTTCCTTCAAATTATCTGTCTGGCGGATACATCCCACAACAAGATGGAACAGGAGACTTTACACTGGAGTTTGCCAATTCAAAGGAGGTGCCTTTCTTTCTACTATAATCATGCTAGCTATTATAAGTAAAACAAATCATTTTTTTTCAT
GGGTGCCATTGTTTGTTCTCTGATTAGTTTTACATTACATGCATGTATTTACATCAAATGTTATTTGACATGCAATCTTAGCTCGCCTTTTTTCACTATGATCTCTGTCCTTTCTCGTGCATAACATAAGGCATTTAAGTATATTTTTATTGCAGAGTCACTATGCAATTATTTAGACTCCCGTACTTCGTAACTCCAGC
TGGCAGAGGTGAATACATCAGTATTGTGTATATGCTCATAACAAACACAATCCATGGATGCTATATGTCATAAGTTCAAGGGTTTAACACTTTCTGAATATGCCACAACCAGCACCAATTATAATTATGAAATCAAATTAAAAATAAGCATGCTTAACAACAAAAGTAAAAAAACGCAGTACAGTGTTAGAAATTCCTCA
GTTGCTATCAGAGCCTTTTGAGTCACATCGACTATAATAAACTATGAGGTCAACTCAACTTTTGATTTGGCTCAGGTTGGCCCAATTGGGGCACACTGGCCATGCATTGGAATGCACTTTTACCTTGTTTTTACCAATTTCATGCAAGTCAACAAGGCATTTTAATTTTTGAAGTGGAATTTCACTGCCAGTACCTGTTT
ATGTATATAAGTTTATAACAGGTATGCAAATGCCAATATCCTCGTTGAGTGTGGCTGTTCATGTATACACCACGCCTGCC
>TRINITY_DN121370_c0_g2_i4 from sample A1 / Example unspliced isoform:CTTTCCTTGTATATCTCATATCCGCTCAAGTCCCCGCATACTCATTCATTTCTTTCTTGCTTCTGCGTTTGCTCTTCCTCCTCCGCTGCCTCACACTGCCAGGATTCAATCAATCCAATAATAACCTACCCACTACTCTCACTGACTCTATTCTCTAACCCTAAAAACCCTAACCCACTCGAAGAAGCCAAGCCTGAAGC
GCCACTGCCACCGCACTGGAAGGGTTACGAGGAATTGCTAATCTCTGCTTCTTCTTCAGATGTCGACCTCCATCGTCTATGGGAGCGTGGTGGACGATGTCGTGAGAAAATTGCGAGATCAATTCCGGAGCGAAGGCGTTGAAGACACTGTCCTTACTGAACTCCAAGAGCTATGGGAATTAAAAATTATGCAAAGTGGA
GCAGTACAAGGTCCAATAGAAAGGGCAGCTAATGCTGCTCCTAGAGGAGCAAATGTTCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACGCCTACGGCAGAGATGCTTTTTCCGCCTACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTA
CCAGTACATGCCGCAAGGTCCAAGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGgtaagtgtttgtatgtattagataaaagattactatccactgtttatttccatgtaaggacagtttttcatcattgttcaataaaaggaagaatatgccatccaac
atgggttctgtttcttcatgcaccaatttatacatgtgcaaagagaggctacatgatttccttgtccaggtatttggttcttgcagggcttcttatggttggaatgtgaaatgtctggtttgatttatatattgcttaatcgccttgacaattccttatattgattctttacatgtcattgtatgtataacttttatgca
aagcttgatttatgtatccattttatgcaaagcttgatttgatgttgttcatgtgttttcttatattactgcagCAACAACCATCAGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAATGACAAAGGTTATTTGTTGA
CTTCGTCATTTTGTCTGTGATGTTTCTTAAGAATCTGTAAGCTTGGAAGGCCATGGTAACATGTATCTCTTATAAAGAATGCCTTCTTAGCTTTAATTTTCTAGTGCCCATGATTACAATAATAGTTCTCCATGTTTTTTTACTTGCTTTACTGGCCATGTTCATATAGCAACTTCTACATTGTTCAACGCAATTGCTGA
AGTTAGTTGTTATTCTCAGTGGTCATCTGTATTGTCCTTTCTTTAATCCTCATTTTAGTGATTCATAATTTCATACTACAAATCAATTGTGGCCCTTTTTTCCAAATCCTTTTTTTGTCAGGTCACCTTGTTTGTGTTTGAATTCAGTTATAATAAAATTCACGAAAAAATTGGT
Intron 3 GTAAGTTTTT ... CCTTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.24 | 144.7 | 39 | 1 |
| A2 | 21.67 | 94 | 26 | 1 |
| A3 | 18.9 | 103 | 24 | 0 |
| A4 | 20.1 | 107.3 | 27 | 1 |
| A5 | 20.22 | 71 | 18 | 0 |
| A6 | 18.28 | 304 | 68 | 0 |
| A7 | 17.61 | 393 | 84 | 0 |
| A8 | 21.02 | 278 | 74 | 0 |
| A9 | 18.57 | 342 | 78 | 0 |
| A10 | 21.58 | 298 | 82 | 0 |
>TRINITY_DN121370_c0_g2_i6 from sample A1 / Example spliced isoformCTTTCCTTGTATATCTCATATCCGCTCAAGTCCCCGCATACTCATTCATTTCTTTCTTGCTTCTGCGTTTGCTCTTCCTCCTCCGCTGCCTCACACTGCCAGGATTCAATCAATCCAATAATAACCTACCCACTACTCTCACTGACTCTATTCTCTAACCCTAAAAACCCTAACCCACTCGAAGAAGCCAAGCCTGAAGC
GCCACTGCCACCGCACTGGAAGGGTTACGAGGAATTGCTAATCTCTGCTTCTTCTTCAGATGTCGACCTCCATCGTCTATGGGAGCGTGGTGGACGATGTCGTGAGAAAATTGCGAGATCAATTCCGGAGCGAAGGCGTTGAAGACACTGTCCTTACTGAACTCCAAGAGCTATGGGAATTAAAAATTATGCAAAGTGGA
GCAGTACAAGGTCCAATAGAAAGGGCAGCTAATGCTGCTCCTAGAGGAGCAAATGTTCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACGCCTACGGCAGAGATGCTTTTTCCGCCTACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTA
CCAGTACATGCCGCAAGGTCCAAGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGCAACAACCATCAGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAA
TGACAAAGGACTTTTTCACATTGTCTACTGGGAAGCGAAAGCGAGAGGAATTTCCTTCAAATTATCTGTCTGGCGGATACATCCCACAACAAGATGGAACAGGAGACTTTACACTGGAGTTTGCCAATTCAAAGGAGGTGCCTTTCTTTCTACTATAATCATGCTAGCTATTATAAGTAAAACAAATCATTTTTTTTCAT
GGGTGCCATTGTTTGTTCTCTGATTAGTTTTACATTACATGCATGTATTTACATCAAATGTTATTTGACATGCAATCTTAGCTCGCCTTTTTTCACTATGATCTCTGTCCTTTCTCGTGCATAACATAAGGCATTTAAGTATATTTTTATTGCAGAGTCACTATGCAATTATTTAGACTCCCGTACTTCGTAACTCCAGC
TGGCAGAGGTGAATACATCAGTATTGTGTATATGCTCATAACAAACACAATCCATGGATGCTATATGTCATAAGTTCAAGGGTTTAACACTTTCTGAATATGCCACAACCAGCACCAATTATAATTATGAAATCAAATTAAAAATAAGCATGCTTAACAACAAAAGTAAAAAAACGCAGTACAGTGTTAGAAATTCCTCA
GTTGCTATCAGAGCCTTTTGAGTCACATCGACTATAATAAACTATGAGGTCAACTCAACTTTTGATTTGGCTCAGGTTGGCCCAATTGGGGCACACTGGCCATGCATTGGAATGCACTTTTACCTTGTTTTTACCAATTTCATGCAAGTCAACAAGGCATTTTAATTTTTGAAGTGGAATTTCACTGCCAGTACCTGTTT
ATGTATATAAGTTTATAACAGGTATGCAAATGCCAATATCCTCGTTGAGTGTGGCTGTTCATGTATACACCACGCCTGCC
>TRINITY_DN121370_c0_g2_i3 from sample A1 / Example unspliced isoform:CTTTCCTTGTATATCTCATATCCGCTCAAGTCCCCGCATACTCATTCATTTCTTTCTTGCTTCTGCGTTTGCTCTTCCTCCTCCGCTGCCTCACACTGCCAGGATTCAATCAATCCAATAATAACCTACCCACTACTCTCACTGACTCTATTCTCTAACCCTAAAAACCCTAACCCACTCGAAGAAGCCAAGCCTGAAGC
GCCACTGCCACCGCACTGGAAGGGTTACGAGGAATTGCTAATCTCTGCTTCTTCTTCAGATGTCGACCTCCATCGTCTATGGGAGCGTGGTGGACGATGTCGTGAGAAAATTGCGAGATCAATTCCGGAGCGAAGGCGTTGAAGACACTGTCCTTACTGAACTCCAAGAGCTATGGGAATTAAAAATTATGCAAAGTGGA
GCAGTACAAGGTCCAATAGAAAGGGCAGCTAATGCTGCTCCTAGAGGAGCAAATGTTCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACGCCTACGGCAGAGATGCTTTTTCCGCCTgtaagtttttatatgtgcagaccagtgttatgtgcttatttccatagctggttcatgtt
ctactagtatagaatattacattgttgcaattgttgttttttttccattgttttgagaaattacatgctcaaatgagcaaaagctgtttaaaaggcctattggcaaaatcagctaagtatgctatattaagttgataggctagttgagctgtaattgttgcatataaattctttgttaacgcctttgctgcctttgacag
ACGCCGTTGCCGAC
Intron 4 GTATTTATAT ... TCTTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.13 | 14 | 0 | 69 |
| A2 | 78.74 | 27 | 1 | 100 |
| A3 | 76.51 | 39 | 0 | 127 |
| A4 | 83.56 | 12 | 0 | 61 |
| A5 | 85.54 | 12 | 4 | 71 |
| A6 | 79.16 | 84 | 3 | 319 |
| A7 | 80.94 | 126 | 9 | 535 |
| A8 | 76.18 | 86 | 1 | 275 |
| A9 | 82.55 | 97 | 5 | 459 |
| A10 | 80.93 | 119 | 2 | 505 |
>TRINITY_DN45696_c0_g3_i3 from sample A10 / Example spliced isoformATTCGGTCCATGTCAATGACGAGGGTCCATGGAGTCCCCCATGATAATTAATGTGCGCACCGTGACATCAACGGGTGAGTCCGAGACCATGTGACCGATCGGTCCCGCAATCCTCATCCTTTAAAAGGGGGCAAAGATGTCGACCTCCATCGTCTATGGGAGCGTGGTGGACGATGTCGTGAGAAAATTGCGAGATCAAT
TCCGGAGCGAAGGCGTTGAAGACACTGTCCTTACTGAACTCCAAGAGCTATGGGAATTAAAAATTATGCAAAGTGGAGCAGTACAAGGTCCAATAGAAAGGGCAGCTAATGCTGCTCCTAGAGGAGCAAATGTTCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACGCCTACGGCA
GAGATGCTTTTTCCGCCTACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTACCAGTACATGCCGCAAGGTCCAAGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGCAACAACCATCAGCTTGGATGAATCAAAG
GCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAATGACAAAGGACTTTTTCACATTGTCTACTGGGAAGCGAAAGCGAGAGGAATTTCCTTCAAATTATCTGTCTGGCGGATACATCCCACAACAAGATGGAACAGGAGACTTTACACTGGAGTTTG
CCAATTCAAAGGAGGCCACTTGCAAAGCAGATTCAGATTTATCAACCCAAAGTCTTGAGGGAAAAACTGCTAATTCCATTCGAAGTGCTAAGGAAAGAAATGAGGCTGATTGTGTGATAGCAGCCATTATTAGAGCCAAGCACAATGCTCTCAAAATTCCTCAGCTTGATGGTGTTGATGATGTTGCAAATGAGGACTAC
AATACACCTGCAGAACAGGATCCACTAACTGTAAATAATGCTGCAAAGGAAGTTAAAACTGAAGTGAACGATGATGAAGAACCACCATTAAATGAAGATGATGATGATGAATTTGATGATATTGAACAAGGGGGAGACGAACCAAGCACAAATCATTTAGTTCTTGCTCAGTTTGAGAAGGTTACAAGAACCAAAAGTAG
GTGGAAATGTACACTGAAGGATGGCATAATGCATTTGAACAACAAGGACATTCTTTTTGCCAAGGCAAATGGCGAGTTTGAGTTCTAAGGTTTCTCCAAGCATTGAAGTGTAGAAAGTGTGCAGAGTGCACATAAACATGTTACTGCGTGTTGCTAAACATGCTTGCTACCTATTTTAACTGGGTTCACAATTCTTTGAG
AAATTACCATCAAAACTCAAAAATTAGGAGCCTGATATTTTGAGAATATGTTAGTATAGGTGGTTTGATTTAAGGACAAATTCGTCACGCCACTTTTCATATTTTTATTGTATTTTGTTCCTGCTTTTAGTTATAGGAGTCCATCAAGGGAATGCTTCCCTAGAGTTCATCTCCATCATTGTATAAATATGTTGGCGGCC
AAACACATCCAAAATTTGTTGCTCTGCGATATGGCGAGATGTTCAGCATGTTCAATCAAAGTTCTGATCCTCATCTTTATAGCCCAAACGGCTTTATTGCAGATTTTGTTTCTTATATTGAGCTATTCCTTCAAATTTCTTAAGAGAAAGATGAATGATTGTACAAGTTCTTTCATACTGTACACATTATTCTATACTGA
AATGCATCACTTAATGAATAAAAAATGTTTATATGCATGGCGAAAAATTATTGGCTG
>TRINITY_DN45696_c0_g3_i2 from sample A10 / Example unspliced isoform:ATTCGGTCCATGTCAATGACGAGGGTCCATGGAGTCCCCCATGATAATTAATGTGCGCACCGTGACATCAACGGGTGAGTCCGAGACCATGTGACCGATCGGTCCCGCAATCCTCATCCTTTAAAAGGGGGCAAAGgtatttatatacacccttaattcccatatattattccattccctttccttgtatatctcatatc
cgctcaagtccccgcatactcattcatttctttcttgcttctgcgtttgctcttcctcctccgctgcctgacactgccaggattcaatcaatccaatataaacctacccactactctcactgactctattctctaaccctaaaaaccctaacccactcgaagaagccaagcctgaagcgccactgccaccgcactggaag
ggttacgaggaattgctaatctctgcttcttcttcagATGTCGACCTCCATCGTCTATGGGAGCGTGGTGGACGATGTCGTGAGAAAATTGCGAGATCAATTCCGGAGCGAAGGCGTTGAAGACACTGTCCTTACTGAACTCCAAGAGCTATGGGAATTAAAAATTATGCAAAGTGGAGCAGTACAAGGTCCAATAGAAA
GGGCAGCTAATGCTGCTCCTAGAGGAGCAAATGTTCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACGCCTACGGCAGAGATGCTTTTTCCGCCTACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTACCAGTACATGCCGCAAGGTCCA
AGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGCAACAACCATCAGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAATGACAAAGGACTTTTTCACATT
GTCTACTGGGAAGCGAAAGCGAGAGGAATTTCCTTCAAATTATCTGTCTGGCGGATACATCCCACAACAAGATGGAACAGGAGACTTTACACTGGAGTTTGCCAATTCAAAGGAGGCCACTTGCAAAGCAGATTCAGATTTATCAACCCAAAGTCTTGAGGGAAAAACTGCTAATTCCATTCGAAGTGCTAAGGAAAGAA
ATGAGGCTGATTGTGTGATAGCAGCCATTATTAGAGCCAAGCACAATGCTCTCAAAATTCCTCAGCTTGATGGTGTTGATGATGTTGCAAATGAGGACTACAATACACCTGCAGAACAGGATCCACTAACTGTAAATAATGCTGCAAAGGAAGTTAAAACTGAAGTGAACGATGATGAAGAACCACCATTAAATGAAGAT
GATGATGATGAATTTGATGATATTGAACAAGGGGGAGACGAACCAAGCACAAATCATTTAGTTCTTGCTCAGTTTGAGAAGGTTACAAGAACCAAAAGTAGGTGGAAATGTACACTGAAGGATGGCATAATGCATTTGAACAACAAGGACATTCTTTTTGCCAAGGCAAATGGCGAGTTTGAGTTCTAAGGTTTCTCCAA
GCATTGAAGTGTAGAAAGTGTGCAGAGTGCACATAAACATGTTACTGCGTGTTGCTAAACATGCTTGCTACCTATTTTAACTGGGTTCACAATTCTTTGAGAAATTACCATCAAAACTCAAAAATTAGGAGCCTGATATTTTGAGAATATGTTAGTATAGGTGGTTTGATTTAAGGACAAATTCGTCACGCCACTTTTCA
TATTTTTATTGTATTTTGTTCCTGCTTTTAGTTATAGGAGTCCATCAAGGGAATGCTTCCCTAGAGTTCATCTCCATCATTGTATAAATATGTTGGCGGCCAAACACATCCAAAATTTGTTGCTCTGCGATATGGCGAGATGTTCAGCATGTTCAATCAAAGTTCTGATCCTCATCTTTATAGCCCAAACGGCTTTATTG
CAGATTTTGTTTCTTATATTGAGCTATTCCTTCAAATTTCTTAAGAGAAAGATGAATGATTGTACAAGTTCTTTCATACTGTACACATTATTCTATACTGAAATGCATCACTTAATGAATAAAAAATGTTTATATGCATGGCGAAAAATTATTGGCTG
Intron 5 GTATGCTTTG ... GTGGACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.06 | 274 | 43.3 | 38.6 |
| A2 | 14.54 | 188 | 29.8 | 33.1 |
| A3 | 14.24 | 158 | 26.3 | 27.1 |
| A4 | 11.06 | 171.2 | 27.3 | 21.7 |
| A5 | 16.44 | 76 | 14.1 | 15.4 |
| A6 | 16.27 | 913.5 | 133.6 | 184.5 |
| A7 | 18.27 | 939.2 | 131.7 | 219.4 |
| A8 | 14.47 | 1131.7 | 152.8 | 198.4 |
| A9 | 15.71 | 915 | 128.1 | 176.9 |
| A10 | 17.85 | 636 | 86.1 | 144.9 |
>TRINITY_DN109466_c3_g1_i3 from sample A2 / Example spliced isoformCTCAAATGAGCAAAAGCTGTTTAAAAGGCCTATTGGCAAAATCAGCTAAGTATGCTATATTAAGTTGATAGGCTAGTTGAGCTGTAATTGTTGCATATAAATTCTTTGTTAACGCCTTTGCTGCCTTTGACAGACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTACCAGTACA
TGCCGCAAGGTCCAAGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGCAACAACCATCAGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAATGACAAAG
GACTTTTTCACATTGTCTACTGGGAAGCGAAAGCGAGAGGAATTTCCTTCAAATTATCTGTCTGGCGGATACATCCCACAACAAGATGGAACAGGAGACTTTACACTGGAGTTTGCCAATTCAAAGGAGGCCACTTGCAAAGCAGATTCAGATTTATCAACCCAAAGTCTTGAGGGAAAAACTGCTAATTCCATTCGAAG
TGCTAAGGAAAGAAATGAGGCTGATTGTGTGATAGCAGCCATTATTAGAGCCAAGCACAATGCTCTCAAAATTCCTCAGCTTGATGGTGTTGATGATGTTGCAAATGAGGACTACAATACACCTGCAGAACAGGATCCACTAACTGTAAATAATGCTGCAAAGGAAGTTAAAACTGAAGTGAACGATGATGAAGAACCAC
CATTAAATGAAGATGATGATGATGAATTTGATGATATTGAACAAGGGGGAGACGAACCAAGCACAAATCATTTAGTTCTTGCTCAGTTTGAGAAGGTTACAAGAACCAAAAGTAGGTGGAAATGTACACTGAAGGATGGCATAATGCATTTGAACAACAAGGACATTCTTTTTGCCAAGGCAAATGGCGAGTTTGAGTTC
TAAGGTTTCTCCAAGCATTGAAGTGTAGAAAGTGTGCAGAGTGCACATAAACATGTTACTGCGTGTTGCTAAACATGCTTGCTACCTATTTTAACTGGGTTCACAATTCTTTGAGAAATTACCATCAAAACTCAAAAATTAGGAGCCTGATATTTTGAGAATATGTTAGTATAGGTGGTTTGATTTAAGGACAAATTCGT
CACGCCACTTTTCATATTTTTATTGTATTTTGTTCCTGCTTTTAGTTATAGGAGTCCATCAAGGGAATGCTTCCCTAGAGTTCATCTCCATCATTGTATAAATATGTTGGCGGCCAAACACATCCAAAATTTGTTGCTCTGCGATATGGCGAGATGTTCAGCATGTTCAATCAAAGTTCTGATCCTCATCTTTATAGCCC
AAACGGCTTTATTGCAGATTTTGTTTCTTATATTGAGCTATTCCTTCAAATTTCTTAAGAGAAAGATGAATGATTGTACAAGTTCTTTCATACTGTACACATTATTCTATACTGAAATGCATCACTTAATGAATAAAAAATGTTTATATGCATGGCAAAAAAA
>TRINITY_DN109466_c3_g1_i2 from sample A2 / Example unspliced isoform:CAAGGACATTCTTTTTGCCAAGgtatgctttgatctttttcattgatgtatgcttaaagtttgtaatggtgtgattctagctgccaattttgtggtggacacagGCAAATGGCGAGTTTGAGTTCTAAGGTTTCTCCAAGCATTGAAGTGTAGAAAGTGTGCAGAGTGCACATAAACATGTTACTGCGTGTTGCTAAACA
TGCTTGCTACCTATTTTAACTGGGTTCACAATTCTTTGAGAAATTACCATCAAAACTCAAAAATTAGGAGCCTGATATTTTGAGAATATGTTAGTATAGGTGGTTTGATTTAAGGACAAATTCGTCACGCCACTTTTCATATTTTTATTGTATTTTGTTCCTGCTTTTAGTTATAGGAGTCCATCAAGGGAATGCTTCCC
TAGAGTTCATCTCCATCATTGTATAAATATGTTGGCGGCCAAACACATCCAAAATTTGTTGCTCTGCGATATGGCGAGATGTTCAGCATGTTCAATCAAAGTTCTGATCCTCATCTTTATAGCCCAAACGGCTTTATTGCAGATTTTGTTTCTTATATTGAGCTATTCCTTCAAATTTCTTAAGAGAAAGATGAATGATT
GTACAAGTTCTTTCATACTGTACACATTATTCTATACTGAAATGCATCACTTAATGAATAAAAAATGTTTATATGCATGGCAAAAAAA
Intron 6 GTAAGGCCAA ... TGTATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.8 | 302 | 24.7 | 61 |
| A2 | 19.37 | 204 | 17 | 49 |
| A3 | 21.18 | 201 | 12 | 54 |
| A4 | 13.99 | 166 | 9.7 | 27 |
| A5 | 11.36 | 78 | 8.7 | 10 |
| A6 | 17.87 | 717 | 55.3 | 156 |
| A7 | 21.72 | 872 | 77.3 | 242 |
| A8 | 19.88 | 951 | 66.3 | 236 |
| A9 | 19.56 | 872 | 70.7 | 212 |
| A10 | 19.03 | 685 | 50.3 | 161 |
>TRINITY_DN121370_c0_g2_i5 from sample A1 / Example spliced isoformCTTTCCTTGTATATCTCATATCCGCTCAAGTCCCCGCATACTCATTCATTTCTTTCTTGCTTCTGCGTTTGCTCTTCCTCCTCCGCTGCCTCACACTGCCAGGATTCAATCAATCCAATAATAACCTACCCACTACTCTCACTGACTCTATTCTCTAACCCTAAAAACCCTAACCCACTCGAAGAAGCCAAGCCTGAAGC
GCCACTGCCACCGCACTGGAAGGGTTACGAGGAATTGCTAATCTCTGCTTCTTCTTCAGATGTCGACCTCCATCGTCTATGGGAGCGTGGTGGACGATGTCGTGAGAAAATTGCGAGATCAATTCCGGAGCGAAGGCGTTGAAGACACTGTCCTTACTGAACTCCAAGAGCTATGGGAATTAAAAATTATGCAAAGTGGA
GCAGTACAAGGTCCAATAGAAAGGGCAGCTAATGCTGCTCCTAGAGGAGCAAATGTTCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACGCCTACGGCAGAGATGCTTTTTCCGCCTACGCCGTTGCCGACCCCTATCCAGACTCCGTTGCCAGGAATTCCAGAGCCAGTTATGTA
CCAGTACATGCCGCAAGGTCCAAGTGACTTTGCTAGTATGCCTGACCCAGTGCTGGGAGGAGATATAAAAATGGGAAGGCCTGCTATCTATATGCAACAACCATCAGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTTAATATAGCTTATGAGGAAGGGAGGGATGATGATGAGGCAGGGATTACTCAGCCTCCAA
TGACAAAGGACTTTTTCACATTGTCTACTGGGAAGCGAAAGCGAGAGGAATTTCCTTCAAATTATCTGTCTGGCGGATACATCCCACAACAAGATGGAACAGGAGACTTTACACTGGAGTTTGCCAATTCAAAGGAGGCCACTTGCAAAGCAGATTCAGATTTATCAACCCAAAGTCTTGAGGGAAAAACTGCTAATTCC
ATTCGAAGTGCTAAGGAAAGAAATGAGGCTGATTGTGTGATAGCAGCCATTATTAGAGCCAAGCACAATGCTCTCAAAATTCCTCAGCTTGATGGTGTTGATGATGTTGCAAATGAGGACTACAATACACCTGCAGAACAGGATCCACTAACTGTAAATAATGCTGCAAAGGAAGTTAAAACTGAAGTGAACGATGATGA
AGAACCACCATTAAATGAAGATGATGATGATGAATTTGATGATATTGAACAAGGGGGAGACGAACCAAGCACAAATCATTTAGTTCTTGCTCAGTTTGAGAAGGTTACAAGAACCAAAAGTAGGTGGAAATGTACACTGAAGGATGGCATAATGCATTTGAACAACAAGGACATTCTTTTTGCCAAGGCAAATGGCGAGT
TTGAGTTCTAAGGTTTCTCCAAGCATTGAAGTGTAGAAAGTGTGCAGAGTGCACATAAACATGTTACTGCGTGTTGCTAAACATGCTTGCTACCTATTTTAACTGGGTTCACAATTCTTTGAGAAATTACCATCAAAACTCAAAACTTAGGAGCCTGATATTTTGAGAATATGTTAGTATAGGTGGTTTGATTTAAGGAC
AAATTCGTCACGCCACTTTTCATATTTTTATTGTATTTTGTTCCTGCTTTTAGTTATAGGAGTCCATCAAGGGAATGCTTCCCTAGAGTTCATCTCCATCATTGTATAAATATGTTGGCGGCCAAACACATCCAAAATTTGTTGCTCTGCGATATGGCGAGATGTTCAGCATGTTCAATCAAAGTTCTGATCCTCATCTT
TATAGCCCAAACGGCTTTATTGCAGATTTTGTTTCTTATATTGAGCTATTCCTTCAAATTTCTTAAGAGAAAGATGAATGATTGTACAAGTTCTTTCATACTGTACACATTATTCTATACTGAAATGCATCACTTAATGAATAAAAAATGTTTATATGCATGGCGAAAAATTATTGGCTGTATATATTATGTTTGGTG
>TRINITY_DN121370_c0_g2_i1 from sample A1 / Example unspliced isoform:AGGAAATTGATGCTTACTTCTTTCTATTTGTTCTAATGGAAAGGTTGCAAATGAGGACTACAATACACCTGCAGAACAGGgtaaggccaagctgaagtaaaaaatcgatttccaccggcttgcaactatactgtgttttcttgtatgttgagtatatcataaatgtttctgttgtatggcagATCCACTAACTGTAAATA
ATGCTGCAAAGGAAGTTAAAACTGAAGTGAACGATGATGAAGAACCACCATTAAATGAAGATGATGATGATGAATTTGATGATATTGAACAAGGGGGAGACGAACCAAGCACAAATCATTTAGTTCTTGCTCAGTTTGAGAAGGTTACAAGAACCAAAAGTAGGTGGAAATGTACACTGAAGGATGGCATAATGCATTTG
AACAACAAGGACATTCTTTTTGCCAAGGCAAATGGCGAGTTTGAGTTCTAAGGTTTCTCCAAGCATTGAAGTGTAGAAAGTGTGCAGAGTGCACATAAACATGTTACTGCGTGTTGCTAAACATGCTTGCTACCTATTTTAACTGGGTTCACAATTCTTTGAGAAATTACCATCAAAACTCAAAACTTAGGAGCCTGATA
TTTTGAGAATATGTTAGTATAGGTGGTTTGATTTAAGGACAAATTCGTCACGCCACTTTTCATATTTTTATTGTATTTTGTTCCTGCTTTTAGTTATAGGAGTCCATCAAGGGAATGCTTCCCTAGAGTTCATCTCCATCATTGTATAAATATGTTGGCGGCCAAACACATCCAAAATTTGTTGCTCTGCGATATGGCGA
GATGTTCAGCATGTTCAATCAAAGTTCTGATCCTCATCTTTATAGCCCAAACGGCTTTATTGCAGATTTTGTTTCTTATATTGAGCTATTCCTTCAAATTTCTTAAGAGAAAGATGAATGATTGTACAAGTTCTTTCATACTGTACACATTATTCTATACTGAAATGCATCACTTAATGAATAAAAAATGTTTATATGCA
TGGCGAAAAATTATTGGCTGTATATATTATGTTTGGTG