sp|Q564K3|CND2_ARATH ----> Condensin complex subunit 2
Intron 1 GTTTTTGCAG ... GATTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.83 | 30 | 10 | 12 |
| A2 | 24.5 | 57 | 12 | 25 |
| A3 | 24.38 | 76 | 23 | 26 |
| A4 | 21.43 | 44 | 11 | 13 |
| A5 | 27.27 | 36 | 3 | 24 |
| A6 | 27.59 | 21 | 7 | 9 |
| A7 | 20.29 | 110 | 11 | 45 |
| A8 | 18.58 | 46 | 8 | 13 |
| A9 | 20 | 96 | 8 | 40 |
| A10 | 19.23 | 105 | 13 | 37 |
>TRINITY_DN109303_c0_g1_i5 from sample A2 / Example spliced isoformTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTGATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGCCCGCCTT
CAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCCTTGGAAA
CGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGATGACGACG
ACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAGTGACGGG
AAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAGTGTTCGA
CTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCTGAGGCAA
TTCTCACAATGCAAAATGAAGACGAGACACTTGATTCTTCTCCTGATAACCAAGAAAGCCTCGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAGTGCAATGATAATGCTGGTGTTCTAGAGGATGGCTTGAATAGCTTGGACTCTGTTAGCGGAACCAAGGGCGTGCATTTCCGAGTG
AAAGTATAACCGCAAACCAAACAAAAGATTGCTGAGTTCGATATTCAGAAAATGCCAAA
>TRINITY_DN109303_c0_g1_i7 from sample A2 / Example unspliced isoform:TCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTGATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGCCCGCCTT
CAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCCTTGGAAA
CGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGATGACGACG
ACACGGAGACCAATTTCCAAAAGgtttttgcagggaattttgttgtcttcaaaggggcgacagttttttctgtggtccatttttgtgtctgtttgttcttttgttggatggaattgcgttgttaagtaaatggcgggttgtggatttggcagGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTG
GATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAGTGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAA
GAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAGTGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTA
ACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCTGAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGT
GGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGAGTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAAT
TGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCATCGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAA
ATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTGTTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTT
GAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGTTGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCA
AGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTAATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATG
AACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTCTTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAA
CTTTTCCATGGGTGC
Intron 2 GTAAACACAT ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.37 | 66.8 | 43 | 22 |
| A2 | 31.54 | 33.2 | 16 | 12 |
| A3 | 35.97 | 32 | 22 | 12 |
| A4 | 30.58 | 38.4 | 12 | 20 |
| A5 | 45.33 | 10.4 | 10 | 6 |
| A6 | 26.73 | 89.2 | 30 | 32 |
| A7 | 26.07 | 139 | 40 | 50 |
| A8 | 26.44 | 108.6 | 40 | 34 |
| A9 | 24.13 | 123.4 | 44 | 29 |
| A10 | 20.58 | 108.2 | 24 | 27 |
>TRINITY_DN115346_c1_g1_i9 from sample A1 / Example spliced isoformCTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGC
CCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCC
TTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGAT
GACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAG
TGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAG
TGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCT
GAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGA
GTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCAT
CGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTG
TTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGT
TGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCAAGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTA
ATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATGAACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTC
TTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAACTTTTCCATGGGTGTACATACTGTTATTATTTGATGTTTGTTGGACGTGGAAAGAGGTTGCAGTATCTCTCCATAAATAAAGGCAAAATTTTATGCCTTTATTTTGGCATGGAAATACTTTTCATTTCTTTTGGTGTTCTTTAC
>TRINITY_DN115346_c1_g1_i3 from sample A1 / Example unspliced isoform:CTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGC
CCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCC
TTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGAT
GACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAG
TGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAG
TGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCT
GAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGA
GTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCAT
CGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTG
TTCTTACTGCCTTCTGTTATGgtaaacacattttccttgaagtgcaagtatctgctgctgaatttttgtcttatatattacacacatgatccagcatactgatatgctatgatgcactgaatttccaagaatgggggatggggatatgggaggatctggagatgagtttctgcaacaggggagacgaggggtaaaatccc
aggggatggaaccactaaaatatttttttatattattatttcgtcattcatataaaaaatgctaatacaacaatgcatcaatcttaaggttgcttgcttactgttgttccaaatctgtttatttgaaatagcaggaggtggctgacacagaaaaatttaaagtagcctcaaacttaaaattagttgaaacttgttatttc
ttggttagtgtttagtttgtgttagagccattttttcatttattttccccagaaaaggggatctttcctcatgccctcccatcgcattgtacataactaaaatataaatttctgttttcactagtcatgaatcaacacttatgtactatattcatcttattatgttttgtgtttaatatttgcagTGTATTGGGAAGCAA
GGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTTGAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGT
TGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCAAGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTA
ATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATGAACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTC
TTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAACTTTTCCATGGGTGTACATACTGTTATTATTTGATGTTTGTTGGACGTGGAAAGAGGTTGCAGTATCTCTCCATAAATAAAGGCAAAATTTTATGCCTTTATTTTGGCATGGAAATACTTTTCATTTCTTTTGGTGTTCTTTAC
Intron 3 GTGGATGCAT ... TATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.81 | 85 | 16 | 21 |
| A2 | 15.15 | 84 | 17.6 | 15 |
| A3 | 16.53 | 101 | 20 | 20 |
| A4 | 21.54 | 51 | 11.3 | 14 |
| A5 | 30.43 | 48 | 6.3 | 21 |
| A6 | 19.8 | 158 | 28.6 | 39 |
| A7 | 19.25 | 281 | 60.6 | 67 |
| A8 | 19.07 | 174 | 32.6 | 41 |
| A9 | 21.32 | 262 | 48 | 71 |
| A10 | 20.42 | 265 | 52 | 68 |
>TRINITY_DN109303_c0_g1_i7 from sample A2 / Example spliced isoformTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTGATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGCCCGCCTT
CAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCCTTGGAAA
CGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGATGACGACG
ACACGGAGACCAATTTCCAAAAGGTTTTTGCAGGGAATTTTGTTGTCTTCAAAGGGGCGACAGTTTTTTCTGTGGTCCATTTTTGTGTCTGTTTGTTCTTTTGTTGGATGGAATTGCGTTGTTAAGTAAATGGCGGGTTGTGGATTTGGCAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTG
GATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAGTGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAA
GAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAGTGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTA
ACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCTGAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGT
GGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGAGTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAAT
TGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCATCGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAA
ATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTGTTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTT
GAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGTTGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCA
AGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTAATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATG
AACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTCTTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAA
CTTTTCCATGGGTGC
>TRINITY_DN109303_c0_g1_i1 from sample A2 / Example unspliced isoform:TCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTGATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGCCCGCCTT
CAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCCTTGGAAA
CGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGATGACGACG
ACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAGTGACGGG
AAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAGTGTTCGA
CTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCTGAGGCAA
TTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGAGTGGCCT
GACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGgtggatgcattacggccttattgatctttttcactgcaaccat
catttaatttaatcaggtattctgaagaggaaattatctgatggatggtgtgtgccatattttgcagATGTACAACAAAGTTCAGATGCTGGGAATGAAGCATCGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCC
ACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTGTTCTTACTGCCTTCTGTTATG
Intron 4 GTAGGTGTCT ... CTTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.97 | 46.2 | 7.7 | 10 |
| A2 | 32.32 | 41.1 | 1.8 | 19 |
| A3 | 39.1 | 48.6 | 3.6 | 31 |
| A4 | 17.9 | 33.2 | 4.8 | 7 |
| A5 | 24.49 | 12.8 | 0.3 | 4 |
| A6 | 28.67 | 104.1 | 3.6 | 41 |
| A7 | 22.69 | 151.2 | 6.9 | 42 |
| A8 | 30.3 | 127.3 | 4.5 | 54 |
| A9 | 29.43 | 142.3 | 4.5 | 57 |
| A10 | 20.23 | 108.3 | 3.6 | 25 |
>TRINITY_DN115346_c1_g1_i4 from sample A1 / Example spliced isoformCTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGC
CCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCC
TTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGAT
GACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAG
TGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAG
TGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCT
GAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGA
GTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCAT
CGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTG
TTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTTGAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTGTTATT
TTGCTATTGCATTATTTTTGTGAATCATTTCTTCTAGTTTCTGACATCTGTTTGCTCTCAGTTACTTTTAATATCTTTCAAAGGTTAGTTTCGACAATACATCCTTTATAAAAGTTGAAGGAAATTCAAGGCAGAGAGGCCTCAGAAATAGAGTTTTTTTTTTATTGATAAGTAAGGTTTGAGATGATGGTTGAACCAAC
GTGGGTGCATCCAATCCTGCATATCTTTTAATTTTAATTCTGAGATAGTAATATCATATTCTTATGTTGTGTTGTCCTTGTCTATTTTCAGATTCCAACGAATTATTTTTATTCTTTTTAGATGATTGTTTTTTCCTTCATCGTTTCCATTCCATAGTCAGGAACATATATTGATCTTATAAAATTCTTACTCTTAGGTG
TTCTAAGGAAATAAATGGGAATACTGTCCTTTACTCTTACCGACTGTTTGCAGCAAAACTGCTTCTGGTTTTCTGAGTGTGCCTCATGGCCTCATTGAAAATTTAACCTTATTATAGGGTCATTGGATCCAACCTCCCCCTATGGATTCCAGCTCTTCAGTTGATTCCCTACTTGGACGAAGTGAAAATTTCCCTTTTTC
ATTGTATATTTTCATTTTGTGGTCTCCTAATGTCTGTCTGGTGTTGTTAGCACTACAGAATAGCAATTCATTTCTGACGTGCTATGCATCTTCTCCTGTCAAACCTCTCTTTACCTTTTAGATGCAGTTCTTGTTTTTATCCTCTTAAAAATAGCTATATAGGTCTGGTTATTTTATTACATATTTCCACATGAATCTTT
GCTATTCACCTCCTCCTCAAGTTCAACAACATATAATAAATAAGCTTTCCAACACATTTAAATGATATTGCATGTAGAATGGTTGCTCTCTTATACATGACAATATTTATCAGGCACTTTACACGTTCCAACATTTATTGTCATTGTTGTTTTATAGAGGCAGGTATGTTACATTTATCATGCACATTTACTTTAATCTT
TCTGGCAAAATATTGTTAAAATTCTCTCACTACATGCTTACAATGTCACTAAAGTCTTCTCCAATAATCTGTTGTGACAATTTTTCATTTAACAACATTCCTCATGATATCCTTTATAGTTTTTAATGCATATAAGCTTGGTTGAAGCTTCCGAGGTTCTAAGCCCAGGCTACCTCATTATTGAAGACTGGAATTTGTTG
AGTGATGATGCTTCCTCTTATGGTTACCATAAATGTAAAAAATGATATCATGCCAATAGATGTTATTTAATCTTTAGTTTTCTTCCTAAATGAGAAGAGGCGTTCCTTTTATAAAATTTGATTCATTGCCACTGAGTCAAGTGGCAAGATTTTTCCCTTCCCTTGGACTAGAAAAGCTCTTTCTGGTGTCTGACTTTGTA
TGTGAACTACTATGCCTACTCTTTTTTTTTCTGGTATCACGTTTTGTGTGTTTCATTACGCTATGCATTTTTGTCCTTTGCTGCAGTAAGTAACCTGCAGCAAGCTGTTATCGCTTTGATTAGAATTTATTTGTCTTTCTACTCAGCTCTCATTCATTATCCTATTAATATGTGTATAGTAAAGAATATTCTCTAAATGT
AACATTTTGGGAATATTCTAGTAAAGATCATTCATGAATTTTATGCGTATAGTAATGAATTTCTCTATCTAAATGAATTGTAGAGAGAAAACAATTTACTCTCTAAATGTAACACTTTGGGAATACTCTAGTGAAGATCATTCATGGATATTATGCATCTAGTAATGAATTTCTCTATCTAAATGTAAGACATTGGGGAT
ATTCAAGTGAAAACTGTTCATCTTTGGCCTCAAAAAGCTCATCCTGTTGTCTGGCTTCATATGTCAACTGCAGGCGTCATATGTTTGTATTTTCTGCTCTTCTCTTAATCATTATCCTATCGATATGTCTGGTC
>TRINITY_DN115346_c1_g1_i6 from sample A1 / Example unspliced isoform:AGAAAAGTGTCTGgtaggtgtctttttatattttcatttcagatcagttttagacattaatgtatctactttttttgatgctacgtctgatagaaatcttacagtactttgtgtatttcaatttgattaattggtcttgacattagaaacttcttaatgctcttctttcagATGAGTCTATTGAAAATAACAGTTTTGAA
CCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTGTTATTTTGCTATTGCATTATTTTTGTGAATCATTTCTTCTAGTTTCTGACATCTGTTTGCTCTCAGTTACTTTTAATATCTTTCAA
AGGTTAGTTTCGACAATACATCCTTTATAAAAGTTGAAGGAAATTCAAGGCAGAGAGGCCTCAGAAATAGAGTTTTTTATTTTTATTGATAAGTAAGGTTTGAGATGATGGTTGAACCAACGTGGGTGCATCCAATCCTGCATATCTTTTAATTTTAATTCTGAGATAGTAATATCATATTCTTATGTTGTGTTGTCCTT
GTCTATTTTCAGATTCCAACGAATTATTTTTATTCTTTTTAGATGATTGTTTTTTCCTTCATCGTTTCCATTCCATAGTCAGGAACATATATTGATCTTATAAAATTCTTACTCTTAGGTGTTCTAAGGAAATAAATGGGAATACTGTCCTTTACTCTTACCGACTGTTTGCAGCAAAACTGCTTCTGGTTTTCTGAGTG
TGCCTCATGGCCTCATTGAAAATTTAACCTTATTATAGGGTCATTGGATCCAACCTCCCCCTATGGATTCCAGCTCTTCAGTTGATTCCCTACTTGGACGAAGTGAAAATTTCCCTTTTTCATTGTATATTTTCATTTTGTGGTCTCCTAATGTCTGTCTGGTGTTGTTAGCACTACAGAATAGCAATTCATTTCTGACG
TGCTATGCATCTTCTCCTGTCAAACCTCTCTTTACCTTTTAGATGCAGTTCTTGTTTTTATCCTCTTAAAAATAGCTATATAGGTCTGGTTATTTTATTACATATTTCCACATGAATCTTTGCTATTCACCTCCTCCTCAAGTTCAACAACATATAATAAATAAGCTTTCCAACACATTTAAATGATATTGCATGTAGAA
TGGTTGCTCTCTTATACATGACAATATTTATCAGGCACTTTACACGTTCCAACATTTATTGTCATTGTTGTTTTATAGAGGCAGGTATGTTACATTTATCATGCACATTTACTTTAATCTTTCTGGCAAAATATTGTTAAAATTCTCTCACTACATGCTTACAATGTCACTAAAGTCTTCTCCAATAATCTGTTGTGACA
ATTTTTCATTTAACAACATTCCTCATGATATCCTTTATAGTTTTTAATGCATATAAGCTTGGTTGAAGCTTCCGAGGTTCTAAGCCCAGGCTACCTCATTATTGAAGACTGGAATTTGTTGAGTGATGATGCTTCCTCTTATGGTTACCATAAATGTAAAAAATGATATCATGCCAATAGATGTTATTTAATCTTTAGTT
TTCTTCCTAAATGAGAAGAGGCGTTCCTTTTATAAAATTTGATTCATTGCCACTGAGTCAAGTGGCAAGATTTTTCCCTTCCCTTGGACTAGAAAAGCTCTTTCTGGTGTCTGACTTTGTATGTGAACTACTATGCCTACTCTTTTTTTTTCTGGTATCACGTTTTGTGTGTTTCATTACGCTATGCATTTTTGTCCTTT
GCTGCAGTAAGTAACCTGCAGCAAGCTGTTATCGCTTTGATTAGAATTTATTTGTCTTTCTACTCAGCTCTCATTCATTATCCTATTAATATGTGTATAGTAAAGAATATTCTCTAAATGTAACATTTTGGGAATATTCTAGTAAAGATCATTCATGAATTTTATGCGTATAGTAATGAATTTCTCTATCTAAATGAATT
GTAGAGAGAAAACAATTTACTCTCTAAATGTAACACTTTGGGAATACTCTAGTGAAGATCATTCATGGATATTATGCATCTAGTAATGAATTTCTCTATCTAAATGTAAGACATTGGGGATATTCAAGTGAAAACTGTTCATCTTTGGCCTCAAAAAGCTCATCCTGTTGTCTGGCTTCATATGTCAACTGCAGGCGTCA
TATGTTTGTATTTTCTGCTCTTCTCTTAATCATTATCCTATCGATATGTCTGGTC
Intron 5 GTAAAATCCC ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.41 | 17 | 3 | 22 |
| A2 | 66.67 | 6 | 0 | 12 |
| A3 | 48 | 13 | 2 | 12 |
| A4 | 62.5 | 12 | 0 | 20 |
| A5 | 60 | 4 | 0 | 6 |
| A6 | 54.24 | 27 | 1 | 32 |
| A7 | 59.52 | 34 | 1 | 50 |
| A8 | 51.52 | 32 | 2 | 34 |
| A9 | 51.79 | 27 | 4 | 29 |
| A10 | 55.1 | 22 | 0 | 27 |
>TRINITY_DN115346_c1_g1_i2 from sample A1 / Example spliced isoformCTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGC
CCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCC
TTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGAT
GACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAG
TGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAG
TGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCT
GAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGA
GTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCAT
CGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTG
TTCTTACTGCCTTCTGTTATGGTAAACACATTTTCCTTGAAGTGCAAGTATCTGCTGCTGAATTTTTGTCTTATATATTACACACATGATCCAGCATACTGATATGCTATGATGCACTGAATTTCCAAGAATGGGGGATGGGGATATGGGAGGATCTGGAGATGAGTTTCTGCAACAGGGGAGACGAGGGTGTATTGGGA
AGCAAGGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTTGAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAA
CAAGTTGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCAAGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTT
AGCTAATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATGAACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCA
TATTCTTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAACTTTTCCATGGGTGTACATACTGTTATTATTTGATGTTTGTTGGACGTGGAAAGAGGTTGCAGTATCTCTCCATAAATAAAGGCAAAATTTTATGCCTTTATTTTGGCATGGAAATACTTTTCATTTCTTTTGGTGTTCTTTAC
>TRINITY_DN115346_c1_g1_i3 from sample A1 / Example unspliced isoform:CTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGC
CCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCC
TTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGAT
GACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAG
TGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAG
TGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCT
GAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGA
GTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCAT
CGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTG
TTCTTACTGCCTTCTGTTATGGTAAACACATTTTCCTTGAAGTGCAAGTATCTGCTGCTGAATTTTTGTCTTATATATTACACACATGATCCAGCATACTGATATGCTATGATGCACTGAATTTCCAAGAATGGGGGATGGGGATATGGGAGGATCTGGAGATGAGTTTCTGCAACAGGGGAGACGAGGGgtaaaatccc
aggggatggaaccactaaaatatttttttatattattatttcgtcattcatataaaaaatgctaatacaacaatgcatcaatcttaaggttgcttgcttactgttgttccaaatctgtttatttgaaatagcaggaggtggctgacacagaaaaatttaaagtagcctcaaacttaaaattagttgaaacttgttatttc
ttggttagtgtttagtttgtgttagagccattttttcatttattttccccagaaaaggggatctttcctcatgccctcccatcgcattgtacataactaaaatataaatttctgttttcactagtcatgaatcaacacttatgtactatattcatcttattatgttttgtgtttaatatttgcagTGTATTGGGAAGCAA
GGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTTGAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGT
TGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCAAGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTA
ATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATGAACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTC
TTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAACTTTTCCATGGGTGTACATACTGTTATTATTTGATGTTTGTTGGACGTGGAAAGAGGTTGCAGTATCTCTCCATAAATAAAGGCAAAATTTTATGCCTTTATTTTGGCATGGAAATACTTTTCATTTCTTTTGGTGTTCTTTAC
Intron 6 GCATGCTAGA ... TGACTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.92 | 60 | 16 | 12 |
| A2 | 18.64 | 72 | 19 | 14 |
| A3 | 20.88 | 108 | 27 | 30 |
| A4 | 20.93 | 68 | 26 | 10 |
| A5 | 21.28 | 37 | 14 | 6 |
| A6 | 25.77 | 36 | 8 | 17 |
| A7 | 21.35 | 151 | 28 | 54 |
| A8 | 18.6 | 70 | 10 | 22 |
| A9 | 19.5 | 128 | 39 | 23 |
| A10 | 18.77 | 158 | 32 | 41 |
>TRINITY_DN115346_c1_g1_i9 from sample A1 / Example spliced isoformCTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGC
CCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCC
TTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGAT
GACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAG
TGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAG
TGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCT
GAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGA
GTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCAT
CGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTG
TTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGT
TGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCAAGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTA
ATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATGAACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTC
TTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAACTTTTCCATGGGTGTACATACTGTTATTATTTGATGTTTGTTGGACGTGGAAAGAGGTTGCAGTATCTCTCCATAAATAAAGGCAAAATTTTATGCCTTTATTTTGGCATGGAAATACTTTTCATTTCTTTTGGTGTTCTTTAC
>TRINITY_DN115346_c1_g1_i10 from sample A1 / Example unspliced isoform:CTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATCCTGC
CCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCACTCC
TTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGTGGAT
GACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGgcatgctagacaaaagaaataataagcttcaataattctctcctcc
actctctggcacatcaaatatgcaggtgcctaagctaggagattgttataaaccatgttttttgagatatgtaaaaggattttatttcaaaatgttttcacaaataatattatctatgattaattgcattggtgtgactttgatatatcatatagtttatatcagaacaaattgtcagtaattacaggctggtatctttg
gcacccatccactgactcaatattaataatgacttccagAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACAAAAGTGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTAT
CATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAGTGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGT
GATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCTGAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGG
ACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTTCAGAGTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAA
TCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAAGCATCGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTC
TTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAAACTGTTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTTGAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTG
ATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGTTGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCAAGACTTTTGGAGGACTGCAGAAACGGAACACGATGAA
ATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAGCGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTAATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATGAACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTA
ACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAATGAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTCTTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAACTTTTCCATGGGTGTACATACTGTTATTATTTGATGT
TTGTTGGACGTGGAAAGAGGTTGCAGTATCTCTCCATAAATAAAGGCAAAATTTTATGCCTTTATTTTGGCATGGAAATACTTTTCATTTCTTTTGGTGTTCTTTAC
Intron 7 GCATGCTAGA ... AAATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.05 | 60 | 16 | 9.8 |
| A2 | 21.3 | 72 | 19.5 | 12 |
| A3 | 20 | 108 | 27 | 22.5 |
| A4 | 27.66 | 68 | 26 | 8.8 |
| A5 | 27.45 | 37 | 14 | 4.5 |
| A6 | 18.18 | 36 | 8 | 13.5 |
| A7 | 15.64 | 151 | 28 | 45 |
| A8 | 12.5 | 70 | 10 | 19.5 |
| A9 | 23.7 | 128 | 39.8 | 22.5 |
| A10 | 17.81 | 158 | 34.3 | 33 |
>TRINITY_DN104829_c2_g1_i7 from sample A4 / Example spliced isoformATTGCTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTGATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATC
CTGCCCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTTAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCA
CTCCTTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGT
GGATGACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAATGGAGTTACAGATCAAGACA
AAAGTGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGG
ATAGTGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTC
AGCTGAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGTTTCTGGTGGTGCTGTTACTT
CAGAGTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAAGTTCAGATGCTGGGAATGAA
GCATCGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTACCAACCAGAGGGGCTTGTAAA
ACTGTTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTTGAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGTTGTTCAGCCTCGAAAGGTGT
TATTTTGCTATTGCATTATTTTTGTGAATCATTTCTTCTAGTTTCTGACATCTGTTTGCTCTCAGTTACTTTTAATATCTTTCAAAGGTTAGTTTCGACAATACATCCTTTATAAAAGTTGAAGGAAATTCAAGGCAGAGAGGCCTCAGAAATAGAGTTTTTTATTATTATTGATAAGTAAGGTTTGAGATTATGGTTGA
ACCAACG
>TRINITY_DN104829_c2_g1_i5 from sample A4 / Example unspliced isoform:ATTGCTCTGCCTCTGTTTCTGCCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTGATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAAGGGTTTTAGTCCGAAACATC
CTGCCCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTTAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCGCGGCCAACAGAAAGAAGTCA
CTCCTTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCACCTTAGTGATATTATCAAAGT
GGATGACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGgcatgctagacaaaagaaataataagcttcaataattctctc
ctccactctctggcacatcaaatatgcagAAAATGGTGA
Intron 8 GTCTGTCAAG ... TATTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.84 | 79 | 0 | 16 |
| A2 | 26.09 | 102 | 0 | 36 |
| A3 | 15.23 | 167 | 2 | 30 |
| A4 | 17.31 | 86 | 2 | 18 |
| A5 | 28.26 | 33 | 1 | 13 |
| A6 | 15.63 | 81 | 0 | 15 |
| A7 | 15.23 | 217 | 0 | 39 |
| A8 | 16.35 | 87 | 0 | 17 |
| A9 | 18.56 | 136 | 0 | 31 |
| A10 | 17.72 | 260 | 0 | 56 |
>TRINITY_DN102461_c0_g1_i2 from sample A5 / Example spliced isoformAGTCGCGCTGTTTGAGGTCCATTGCTCTGCCTCTGTTTCTGTCATCAGATCGAGCATTTTGTTTATTTATTTATTCATAGATGCTCTCTTCTTTCGTTTCCTTTATACCCTCTATTGATCCTGAACGACATAGCCACTGTTGTGAATCGATCCCACGACTTCCCATTCCATTTAACACAAAAGATTATACAGAAACCAAA
GGGTTTTAGTCCGAAACATCCTGCCCGCCTTCAATATTTGACGAAGAGGAAGAAGAAGCAGCAGGCAATGGGCAAGATAAACGTAACGAAAAAGAGCAGAACGCCCCTGAAGGCGAGGACGCAGTCCCCTGCGCGTGTTCTTCTCTTGAATAATAACGACGACGAGTTCGAACGGGCTCAATCCCGCGCGGTCCGAGCCG
CGGCCAACAGAAAGAAGTCACTCCTTGGAAACGATGGAAACGGTGGCGGAGGCATCGGCAGATCCATTTCCTCCCAATTGCGGGACGAGGATCTCCTCGACAAAGATCAGATCTTAGACCTCCTACAGAACTGCATCAAACTAGCCAGCGAAAATAAAATTAATCAGCGGAATACCTGGGAGCTCAGCCTGATTGATCAC
CTTAGTGATATTATCAAAGTGGATGACGACGACACGGAGACCAATTTCCAAAAGGCAAGTTGCACACTGGAAGCCGGTGTAAAGATTTACTCACTGAGAGTGGATTCAGTGCATACAGAAGCATACAAGGTTCTCGGAGGAATCAATCGTACAGGAACAGGAGATCAAGATCATAATGAAAATGGTGAAGAGGGTGAAAA
TGGAGTTACAGATCAAGACAAAAGTGACGGGAAGAGGGATTTCCAAAAGATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCTGCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTG
GCGTTTATAATGATTGCCGGATAGTGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACAAACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTT
GATGATCCTTATCGGAATTCAGCTGAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCAATGACAATGCTGGTGTTCTGAAGGATGGCTTGAATAGCCTGGACTCTGT
TTCTGGTGGTGCTGTTACTTCAGAGTGGCCTGACAATGAGGAGATGGGTTATGGTGAATTGGAGTTTGAGTATGATAAAGATATATCAAGTGAAAAAACAATTGATTATTTGTTTTTAGGGATGGGGGTGTCATCCAAATCAAATGCTTGGGCTGGTCCTGATCACTGGAAGTATCGCAGAGTTAAAGATGTACAACAAA
GTTCAGATGCTGGGAATGAAGCATCGTTGAATGACAATAAATCAAAGAAAAGGAAACGGGAACCATTTTCAATTGATTTTTTGTACCGTCCTGACACTGAAAATGGTGCTGCCTTTGCTCCACCTAAAAATCAGCGGTCTTTGTTATTGCCTCAGAGCAGCTCTTCTGGGAAAACTACTCTTCCAGAAGACTGTCACTAC
CAACCAGAGGGGCTTGTAAAACTGTTCTTACTGCCTTCTGTTATGTGTATTGGGAAGCAAGGAAGAAAAGTGTCTGATGAGTCTATTGAAAATAACAGTTTTGAACCATCAGCTACATGGGGCAGTGAAGATGGGTTTGATGCTAACTGGGATGATGCACAAGGTGATATCGAGGAGGAATATTCGAATGAGAAAATGGT
TGTTCAGCCTCGAAAGGTTCAGAAGATTGAAGTGGATTATGACAAAACATCAAAACAAGTTGATGTCCATGTTTTGAAAAAGGCACTTTGGGGTTCTATGCAAGACTTTTGGAGGACTGCAGAAACGGAACACGATGAAATGCCTGAAACTGTAATGTCATTTAAGGGACTTCTGAGCAGCTTGCCTCCAGATTGCCCAG
CGGCTGCACCTGAGGACATTTCTGTGCATCTATGTTTCATTTGCTTGTTACATTTAGCTAATGAACATTGCTTAAGCATCCGAGACTGCCCGAATTTAGATGAACTCTGTATTGAAATACCAGCGAGTTTGCAGAAGTAACCATTTGAGTGTGATGCATGACATGTTTTGTATGCAAGTCAATTTTGTATTATACCAAAT
GAAACTATCAAGCTAAGCCCATTCTTTGCAGGACAAGCTCTTGCATAATGTATCATATTCTTTTGGGCAGTAATCTCACTGCCATTTGATTAAGTTGGAAAACTTTTCCATGGGTGTACATACTGTTATTATTTGATGTTTGTTGGACGTGGAAAGAGGTTGCAGTATCTCTCCATAAATAAAGGCG
>TRINITY_DN102461_c0_g1_i5 from sample A5 / Example unspliced isoform:GGGATTTCCAAAAGgtctgtcaagagctgttgatgcctagaagttttaatggacagaattttatatttgacatgatctttttgcaatctattgtgcagATATCAGATCCCTCAACTACTTTGGAACCTTCTTTTGAGTCACTGAATGTAAAGAAGTTTGATGTTGCTTTCACAGTAGATCCTTTGTATCATCAAACCTCT
GCACAATTTGATGAGGGAGGGGCCAAGGGTCTTCTTCTCAACACCCTTGGCGTTTATAATGATTGCCGGATAGTGTTCGACTCCTGGGACATTCCAGGAAAAAGCATGAAATCTGGATTTATACAAAACAGAGAGAGTTTTGAGACAATTAACGTCTCTTTTATAAAAGATTGTATTGAGCAAATGGTGATGGATTTACA
AACTAAAAGGGAGATCTCGCCAACACTCAAGGAAATTCTAAGATTATTTGATGATCCTTATCGGAATTCAGCTGAGGCAATTCTCACAATGCAAAATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGCTTTTGATGATGTAAGCCCTCAGGACTTTGAATGCA
ATGAAGATGAGACACTTGATTCTTCTCTTGATAACCAAGAAAGCCTTGATGAAGGTGGAATGGAAGAGGC