sp|Q8GWJ4|OSB3_ARATH ----> Protein OSB3, chloroplastic/mitochondrial
Intron 1 GTTATTGCTC ... CAACAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 7 | 5 | 2 |
| A2 | 41.67 | 7 | 4 | 6 |
| A3 | 86.67 | 1 | 7 | 6 |
| A4 | 69.23 | 2 | 4 | 5 |
| A5 | 71.43 | 1 | 2 | 3 |
| A6 | 67.03 | 15 | 31 | 30 |
| A7 | 66.67 | 7 | 13 | 15 |
| A8 | 60.56 | 14 | 19 | 24 |
| A9 | 58.33 | 15 | 17 | 25 |
| A10 | 52 | 6 | 4 | 9 |
>TRINITY_DN43957_c0_g3_i2 from sample A8 / Example spliced isoformGCCGAATTCGAAAACCTCTGTGCGATCCACCCATACGCACAGTGTGTATATATAGTTGGCAACAAAACCGCCTGCTAAACCCCTGAATCCAATCTTCTCTGCTCTCCACTCAAGCCAAGTCTCACTCTCGCAGTAGCTCTATAATATTCGTCTGCAGAGTTCCTCGAATGTACGAAAATTTGGCCGAAAACGTGTCCCTT
ACTATTTCTCCTAGGGCATAGCGAGAGTGGCGCGCAATGAAAGTCCGTGGCACTTCGATTATCAGGACCTTCGGAGGCATGGCCGCGACATCCCAGTGGAATCTCTCCCTCCGTAATTCTCTTCGCCCAAAACAGCCTATAACATTTCATCCCACCTCAGCCCTTGCAAATCCTCAGAACAGCCGGTTTTGCTCAGAATG
GACGTTGGCAACGGAGGAGATGAAGTGCAAACTGAAATGTAGACGTGAATACATTGAAGATGAGAGCTTTGGGAGAAATGCTCCCTCTAGTACTGCTAGTGAATGTACTAATAATGACAAAGATGAAAGCTCTAGGAAAAACGTTCCCTCTGTTACTGCTGAGTGCGTGGCCAAAGATTGCAGAGAACATAATAATTATG
AATATGAAAGCTTAAGGGTATCTGCCGAGGTTTCTCGACCTCGACCACAAGTGGTGCTATGGCAGAAAGGGCATGGCAACAAAGTCCATTTTATTGGAAGAATAGCTCTGCCCGTTCAATACAGTCCCACAAAATCAGGAAAATTGTGTGCAACGACTACACTCCAACTTTATAATGGTATCTGGTTTCCTTTGCTATTT
TTCAATGAGTTAGCAGAAATTGCAGCACAGCATCTGAAAAAATGGGATTTAGTGTATGTTTCAGGTTGCTTTGCTTTACAAAGAAGACCTGGTGAAGGTGAAAAGTCACAGACATATAAGATTATGCTGCTTCTATTGAAAGTTTGTGGCGAGCATATTTCAGGAGCCCACTTGAATGGCAGGACACAAGGACGAATAAG
ACGAACCCAAAGTGCCCCGATTTCAAGCACAAGTATACAGGTCAACTTTTGTGGATTCATAATAGATCAAATCCGTCATGGGTTAAGTATAGGTTAGCTGTACGGGATTCCAGAATGAAGGTTCCAGAGAAATGTGGATGAGGCGGATCTTCTGCAAGGTATCAGGGATCATTATAATCATCCCAGGATAGTGGTTTCTA
GGATATATGTTTCCCATGACAGTTGTTTTTGAGTTTTCTAAGGGACATCCTAATTGGTTGGGTAAGTAGATTTATTGCTGGCTATGATATCTTGAATAATCTATCTATTTTGTTGACTGTCTTTGGATACTCACTCTTCTGCAAAATTTTGGTGGTAATTATCTCCATAACCATTTTTCGTTTATCATCAATTTGTCTTG
CCATTCACTGGACATAGTCGACAATTGCTAGAGTCGAAAGTGAAATTTCTTCTTCACTTGGTCATAGAGCATAAAGCATTTTCTATGATATTTTCCCATTCAATCCTTTTGTCGTGTTTTAATCCAAATTTTTTGCCAATTGAATTGTAAATTGCGAACGAGAGGCAATTCGTAACGAATAAAAAGATGCTTTTCTATGC
ACTGATAATAGTTTGATTTCAGCGGCATGTTAGTTTTATGCTTGATATTTCAAATGATTCTTGCATCATGAGAGGTATATCTAACGTTCCGGAAATATAAAGACAAGACAGCAAAAATATTGACGAGTAAACACGCCTTTTTTTTTGTATAGCAAAGATGTAAATGCCACCTATTGTATGATTATTTCTCTGTGCTGCTT
TGCATGTGACACATCAATTTAAGCTTCATAGCATGTACAGTGC
>TRINITY_DN43957_c0_g3_i3 from sample A8 / Example unspliced isoform:GCCGAATTCGAAAACCTCTGTGCGATCCACCCATACGCACAGTGTGTATATATAGTTGGCAACAAAACCGCCTGCTAAACCCCTGAATCCAATCTTCTCTGCTCTCCACTCAAGCCAAGTCTCACTCTCGCAGTAGCTCTATAATATTCGTCTGCAGAGTTCCTCGAATGTACGAAAATTTGGCCGAAAACGTGTCCCTT
ACTATTTCTCCTAGGGCATAGCGAGAGTGGCGCGCAATGAAAGTCCGTGGCACTTCGATTATCAGGACCTTCGGAGGCATGGCCGCGACATCCCAGTGGAATCTCTCCCTCCGTAATTCTCTTCGCCCAAAACAGCCTATAACATTTCATCCCACCTCAGCCCTTGCAAATCCTCAGAACAGCCGGTTTTGCTCAGAATG
GACGTTGGCAACGGAGGAGATGAAGTGCAAACTGAAATGTAGACGTGAATACATTGAAGATGAGAGCTTTGGGAGAAATGCTCCCTCTAGTACTGCTAGTGAATGTACTAATAATGACAAAGATGAAAGCTCTAGGAAAAACGTTCCCTCTGTTACTGCTGAGTGCGTGGCCAAAGATTGCAGAGAACATAATAATTATG
AATATGAAAGCTTAAGGGTATCTGCCGAGGTTTCTCGACCTCGACCACAAGTGGTGCTATGGCAGAAAGGGCATGGCAACAAAGTCCATTTTATTGGAAGAATAGCTCTGCCCGTTCAATACAGTCCCACAAAATCAGGAAAATTGTGTGCAACGACTACACTCCAACTTTATAATGGTATCTGGTTTCCTTTGCTATTT
TTCAATGAGTTAGCAGAAATTGCAGCACAGCATCTGAAAAAATGGGATTTAGTGTATGTTTCAGGTTGCTTTGCTTTACAAAGAAGACCTGGTGAAGGTGAAAAGTCACAGACATATAAGgttattgctcggactctaaatttcattgaaaagagatctccagatttttcccaacaagcagATTATGCTGCTTCTATTGA
AAGTTTGTGGCGAGCATATTTCAGGAGCCCACTTGAATGGCAGGACACAAGGACGAATAAGACGAACCCAAAGTGCCCCGATTTCAAGCACAAGTATACAGGTCAACTTTTGTGGATTCATAATAGATCAAATCCGTCATGGGTTAAGTATAGGTTAGCTGTACGGGATTCCAGAATGAAGGTTCCAGAGAAATGTGGAT
GAGGCGGATCTTCTGCAAGGTATCAGGGATCATTATAATCATCCCAGGATAGTGGTTTCTAGGATATATGTTTCCCATGACAGTTGTTTTTGAGTTTTCTAAGGGACATCCTAATTGGTTGGGTAAGTAGATTTATTGCTGGCTATGATATCTTGAATAATCTATCTATTTTGTTGACTGTCTTTGGATACTCACTCTTC
TGCAAAATTTTGGTGGTAATTATCTCCATAACCATTTTTCGTTTATCATCAATTTGTCTTGCCATTCACTGGACATAGTCGACAATTGCTAGAGTCGAAAGTGAAATTTCTTCTTCACTTGGTCATAGAGCATAAAGCATTTTCTATGATATTTTCCCATTCAATCCTTTTGTCGTGTTTTAATCCAAATTTTTTGCCAA
TTGAATTGTAAATTGCGAACGAGAGGCAATTCGTAACGAATAAAAAGATGCTTTTCTATGCACTGATAATAGTTTGATTTCAGCGGCATGTTAGTTTTATGCTTGATATTTCAAATGATTCTTGCATCATGAGAGGTATATCTAACGTTCCGGAAATATAAAGACAAGACAGCAAAAATATTGACGAGTAAACACGCCTT
TTTTTTTGTATAGCAAAGATGTAAATGCCACCTATTGTATGATTATTTCTCTGTGCTGCTTTGCATGTGACACATCAATTTAAGCTTCATAGCATGTACAGTGC
Intron 2 GTGAATAACT ... AATTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.46 | 8 | 0 | 5 |
| A2 | 47.83 | 12 | 0 | 11 |
| A3 | 50 | 6 | 1 | 6 |
| A4 | 24.32 | 6.3 | 0 | 2 |
| A5 | 62.5 | 3 | 0 | 5 |
| A6 | 34.1 | 31.6 | 0 | 16 |
| A7 | 30.61 | 16 | 1 | 7 |
| A8 | 34.23 | 36.9 | 2 | 19 |
| A9 | 25.99 | 34.3 | 0 | 12 |
| A10 | 33.38 | 16 | 0 | 8 |
>TRINITY_DN42545_c5_g1_i2 from sample A6 / Example spliced isoformCGAAAACCTCTGTGCGATCCACCCATACGCACAGTGTGTATATATAGTTGGCAACAAAACCGCCTGCTAAACCCCTGAATCCAATCTTCTCTGCTCTCCACTCAAGCCAAGTCTCACTCTCGCAGTAGCTCTATAATATTCGTCTGCAGAGTTCCTCGAATGTACGAAAATTTGGCCGAAAACGTGTCCCTTACTATTTC
TCCTAGGGCATAGCGAGAGTGGCGCGCAATGAAAGTCCGTGGCACTTCGATTATCAGGACCTTCGGAGGCATGGCCGCGACATCCCAGTGGAATCTCTCCCTCCGTAATTCTCTTCGCCCAAAACAGCCTATAACATTTCATCCCACCTCAGCCCTTGCAAATCCTCAGAACAGCCGGTTTTGCTCAGAATGGACGTTGG
CAACGGAGGAGATGAAGTGCAAACTGAAATGTAGACGTGAATACATTGAAGATGAGAGCTTTGGGAGAAATGCTCCCTCTAGTACTGCTAGTGAATGTACTAATAATGACAAAGATGAAAGCTCTAGGAAAAACGTTCCCTCTGTTACTGCTGAGTGCGTGGCCAAAGATTGCAGAGAACATAATAATTATGAATATGAA
AGCTTAAGGGTATCTGCCGAGGTTTCTCGACCTCGACCACAAGTGGTGCTATGGCAGAAAGGGCATGGCAACAAAGTCCATTTTATTGGAAGAATAGCTCTGCCCGTTCAATACAGTCCCACAAAATCAGGAAAATTGTGTGCAACGACTACACTCCAACTTTATAATGGTATCTGGTTTCCTTTGCTATTTTTCAATGA
GTTAGCAGAAATTGCAGCACAGCATCTGAAAAAATGGGATTTAGTGTATGTTTCAGGTTGCTTTGCTTTACAAAGAAGACCTGGTGAAGGTGAAAAGTCACAGACATATAAGGTTATTGCTCGGACTCTAAATTTCATTGAAAAGAGATCTCCAGATTTTTCCCAACAAGCAGATTATGCTGCTTCTATTGAAAGTTTGT
GGCGAGCATATTTCAGGAGCCCACTTGAATGGCAGGACACAAGGACGAATAAGACGAACCCAAAGTGCCCCGATTTCAAGCACAAGTATACAGGTCAACTTTTGTGGATTCATAATAGATCAAATCCGTCATGGGTTAAGTATAGGTTAGCTGTACGGGATTCCAGAATGAAGGTTCCAGAGAAATGTGGATGAGGCGGA
TCTTCTGCAAGGTATCAGGGATCATTATAATCATCTCAGGATAGTGGTTTCTAGGATATATGTTTCCCATGACAGTTGTTTTTGAGTTTTCTAAGGGACATCCTAATTGGTTGGGTAAGTAGATTTATTGCTGGCTATGATATCTTGAATAATCTATCTATTTTGTTGACTGTCTTTGGATACTCACTCTTCTGCAAAAT
TTTGGTGGTAATTATCTCCATAACCATTTTTCGTTTATCATCAATTTGTCTTGCCATTCACTGGACATAGTCGACAATTGCTAGAGTCGAAAGTGAAATTTCTTCTTCACTTGGTCATAGAGCATAAAGCATTTTCTATGATATTTTCCCATTCAATCCTTTTGTCGTGTTTTAATCCAAATTTTTTGCCAATTGAATTG
TAAATTGCGAACGAGAGGCAATTCGTAACGAATAAAAAGATGCTTTTCTATGCACTGATAATAGTTTGATTTCAGCGGCATGTTAGTTTTATGCTTGATATTTCAAATGATTCTTGCATCATGAGAGGTATATCTAACGTTCCGGAAATATAAAGACAAGACAGCAAAAATATTGACG
>TRINITY_DN42545_c5_g1_i1 from sample A6 / Example unspliced isoform:GGCAGGACACAAGGACGAATAAGgtgaataactacatttccacttctctcttttagaaatatatgaagtttttggctggacagttttttttcagtgttaaagtcttcaaggaaaaatataaatatagtcacaaagtgggtgaattctacagACGAACCCAAAGTGCCCCGATTTCAAGCACAAGTATACAGGTCAACTTT
TGTGGATTCATAATAGATCAAATCCGTCATGGGTTAAGTATAGGTTAGCTGTACGGGATTCCAGAATGAAGGTTCCAGAGAAATGTGGATGAGGCGGATCTTCTGCAAGGTATCAGGGATCATTATAATCATCTCAGGATAGTGGTTTCTAGGATATATGTTTCCCATGACAGTTGTTTTTGAGTTTTCTAAGGGACATC
CTAATTGGTTGGGTAAGTAGATTTATTGCTGGCTATGATATCTTGAATAATCTATCTATTTTGTTGACTGTCTTTGGATACTCACTCTTCTGCAAAATTTTGGTGGTAATTATCTCCATAACCATTTTTCGTTTATCATCAATTTGTCTTGCCATTCACTGGACATAGTCGACAATTGCTAGAGTCGAAAGTGAAATTTC
TTCTTCACTTGGTCATAGAGCATAAAGCATTTTCTATGATATTTTCCCATTCAATCCTTTTGTCGTGTTTTAATCCAAATTTTTTGCCAATTGAATTGTAAATTGCGAACGAGAGGCAATTCGTAACGAATAAAAAGATGCTTTTCTATGCACTGATAATAGTTTGATTTCAGCGGCATGTTAGTTTTATGCTTGATATT
TCAAATGATTCTTGCATCATGAGAGGTATATCTAACGTTCCGGAAATATAAAGACAAGACAGCAAAAATATTGACG
Intron 3 GTGAATAACT ... AATTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.43 | 8 | 2 | 5 |
| A2 | 31.43 | 12 | 0 | 11 |
| A3 | 40 | 6 | 2 | 6 |
| A4 | 22.22 | 7 | 2 | 2 |
| A5 | 53.85 | 3 | 2 | 5 |
| A6 | 26.92 | 38 | 12 | 16 |
| A7 | 28 | 18 | 7 | 7 |
| A8 | 26.32 | 42 | 11 | 19 |
| A9 | 20.43 | 37 | 7 | 12 |
| A10 | 30.61 | 17 | 7 | 8 |
>TRINITY_DN41025_c0_g1_i1 from sample A9 / Example spliced isoformCCGAATTCGAAAACCTCTGTGCGATCCACCCATACGCACAGTGTGTATATATAGTTGGCAACAAAACCGCCTGCTAAACCCCTGAATCCAATCTTCTCTGCTCTCCACTCAAGCCAAGTCTCACTCTCGCAGTAGCTCTATAATATTCGTCTGCAGAGTTCCTCGAATGTACGAAAATTTGGCCGAAAACGTGTCCCTTA
CTATTTCTCCTAGGGCATAGCGAGAGTGGCGCGCAATGAAAGTCCGTGGCACTTCGATTATCAGGACCTTCGGAGGCATGGCCGCGACATCCCAGTGGAATCTCTCCCTCCGTAATTCTCTTCGCCCAAAACAGCCTATAACATTTCATCCCACCTCAGCCCTTGCAAATCCTCAGAACAGCCGGTTTTGCTCAGAATGG
ACGTTGGCAACGGAGGAGATGAAGTGCAAACTGAAATGTAGACGTGAATACATTGAAGATGAGAGCTTTGGGAGAAATGCTCCCTCTAGTACTGCTAGTGAATGTACTAATAATGACAAAGATGAAAGCTCTAGGAAAAACGTTCCCTCTGTTACTGCTGAGTGCGTGGCCAAAGATTGCAGAGAACATAATAATTATGA
ATATGAAAGCTTAAGGGTATCTGCCGAGGTTTCTCGACCTCGACCACAAGTGGTGCTATGGCAGAAAGGGCATGGCAACAAAGTCCATTTTATTGGAAGAATAGCTCTGCCCGTTCAATACAGTCCCACAAAATCAGGAAAATTGTGTGCAACGACTACACTCCAACTTTATAATGGTATCTGGTTTCCTTTGCTATTTT
TCAATGAGTTAGCAGAAATTGCAGCACAGCATCTGAAAAAATGGGATTTAGTGTATGTTTCAGGTTGCTTTGCTTTACAAAGAAGACCTGGTGAAGGTGAAAAGTCACAGACATATAAGGTTATTGCTCGGACTCTAAATTTCATTGAAAAGAGATCTCCAGATTTTTCCCAACAAGCAGATTATGCTGCTTCTATTGAA
AGTTTGTGGCGAGCATATTTCAGGAGCCCACTTGAATGGCAGGACACAAGGACGAATAAGACGAACCCAAAGTGCCCCGATTTCAAGCACAAGTATACAGGTCAACTTTTGTGGATTCATAATAGATCAAATCCGTCATGGGTTAAGTATAGGTTAGCTGTACGGGATTCCAGAATGAAGGTTCCAGAGAAATGTGGATG
AGGCGGATCTTCTGCAAGGTATCAGGGATCATTATAATCATCTCAGGATAGTGGTTTCTAGGATATATGTTTCCCATGACAGTTGTTTTTGAGTTTTCTAAGGGACATCCTAATTGGTTGGGTAAGTAGATTTATTGCTGGCTATGATATCTTGAATAATCTATCTATTTTGTTGACTGTCTTTGGATACTCACTCTTCT
GCAAAATTTTGGTGGTAATTATCTCCATAACCATTTTTCGTTTATCATCAATTTGTCTTGCCATTCACTGGACATAGTCGACAATTGCTAGAGTCGAAAGTGAAATTTCTTCTTCACTTGGTCATAGAGCATAAAGCATTTTCTATGATATTTTCCCATTCAATCCTTTTGTCGTGTTTTAATCCAAATTTTTTGCCAAT
TGAATTGTAAATTGCGAACGAGAGGCAATTCGTAACGAATAAAAAGATGCTTTTCTATGCACTGATAATAGTTTGATTTCAGCGGCATGTTAGTTTTATGCTTGATATTTCAAATGATTCTTGCATCATGAGAGGTATATCTAACGTTCCGGAAATATAAAGACAAGACAGCAAAAATATTGACGAGC
>TRINITY_DN41025_c0_g1_i2 from sample A9 / Example unspliced isoform:GTTATTGCTCGGACTCTAAATTTCATTGAAAAGAGATCTCCAGATTTTTCCCAACAAGCAGATTATGCTGCTTCTATTGAAAGTTTGTGGCGAGCATATTTCAGGAGCCCACTTGAATGGCAGGACACAAGGACGAATAAGgtgaataactacatttccacttctctcttttagaaatatatgaagtttttggctggaca
gttttttcagtgttaaagtcttcaaggaaaaatataaatatagtcacaaagtgggtgaattctacagACGAACCCAAAGTGCCCCGATTTCAAGCACAAGTATACAGGTCAACTTTTGTGGATTCATAATAGATCAAATCCGTCATGGGTTAAGTATAGGTTAGCTGTACGGGATTCCAGAATGAAGGTTCCAGAGAAAT
GTGGATGAGGCGGATCTTCTGCAAGGTATCAGGGATCATTATAATCATCTCAGGATAGTGGTTTCTAGGATATATGTTTCCCATGACAGTTGTTTTTGAGTTTTCTAAGGGACATCCTAATTGGTTGGGTAAGTAGATTTATTGCTGGCTATGATATCTTGAATAATCTATCTATTTTGTTGACTGTCTTTGGATACTCA
CTCTTCTGCAAAATTTTGGTGGTAATTATCTCCATAACCATTTTTCGTTTATCATCAATTTGTCTTGCCATTCACTGGACATAGTCGACAATTGCTAGAGTCGAAAGTGAAATTTCTTCTTCACTTGGTCATAGAGCATAAAGCATTTTCTATGATATTTTCCCATTCAATCCTTTTGTCGTGTTTTAATCCAAATTTTT
TGCCAATTGAATTGTAAATTGCGAACGAGAGGCAATTCGTAACGAATAAAAAGATGCTTTTCTATGCACTGATAATAGTTTGATTTCAGCGGCATGTTAGTTTTATGCTTGATATTTCAAATGATTCTTGCATCATGAGAGGTATATCTAACGTTCCGGAAATATAAAGACAAGACAGCAAAAATATTGACGAGC