NA ----> NA

Intron 1 GTATGCGGAG ... GCAATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	13.12	26.5	4	0
A2	45.45	30	25	0
A3	10.64	17	2	1.2
A4	6.2	15.5	1	3
A5	30.55	11.5	5	0
A6	25.15	165.5	55.6	3
A7	24.17	138	44	6
A8	25.48	134.5	46	4.2
A9	30.54	161.5	71	3
A10	24.36	118	38	4.2

>TRINITY_DN36893_c0_g1_i4 from sample A6 / Example spliced isoform

GTTCTTGGTCTTTCTCCTTTTCCCTTCTTTGTGAAAAGAGCCTCATGGAGACGAATTTGAGCAAAGAAGATGAACTGAATCACCAAAATATGCAGGCCATGGTGCGCTCTACCAGAGCTCTTCATCTATTGCTGTCGTTGCAGTCCTTGTCCTCAGGAAGGAACCTAAAGTCCAAGCACAAGATTTCTGCATACGCTGAG
GAGTCTCAAATGTATTCGGAGAAATATGAGCGGCTGATAGGAGCAATAAGGGTGCTAGAAGACGATCTTCGAGCAGAGCGCCGCAAGCTTAAACTTCTCAACACCTACAATGCGTATGCCGATATCGCCCGGCTTTGTTTATTCATAGCTGGAACCTGTGCAATACTGGTTTTCCTTTCTTAATTTGGTTCTTGCTTTAT
CTCTGTCTTAATAACAGACTTCAAATAGCCATTTTACCCCAATTGTGGCCATATTGTATTTTGCTCAAGAACGAAAGGGTGAAGTTTTTTAATCCAATGAACTTTCGTTTGTTTCAGCAATTTACAATACGGTAACTTTCGTTTGTTTCAGCAATTTACAATACTGTACTGCTTGCGGTTTGGTTTGGTTAGTCGCGCAA
TGGGTTTTTCTTATATGACAGAAGTAATGGGAATTTGTTTACAACCTGGATCTCAGTAGTAGTGGGC

>TRINITY_DN36893_c0_g1_i5 from sample A6 / Example unspliced isoform:

GTTCTTGGTCTTTCTCCTTTTCCCTTCTTTGTGAAAAGAGCCTCATGGAGACGAATTTGAGCAAAGAAGATGAACTGAATCACCAAAATATGCAGGCCATGGTGCGCTCTACCAGAGCTCTTCATCTATTGCTGTCGTTGCAGTCCTTGTCCTCAGgtatgcggagatttttctgacccgacagtcgctctttattgtcc
tttatttctttactttgtttctttattcgcaagcaattgcagGAAGGAACCTAAAGTCCAAG

Intron 2 GTATAGATAA ... TGAATGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	44.44	15	14.4	12
A2	79.53	7.7	5.5	30
A3	70	6	10.2	14
A4	68	8	13.9	17
A5	58.33	10	2.7	14
A6	59.05	153.5	104.3	221.3
A7	54.5	93.7	71.6	112.3
A8	63.64	95	62.5	166.3
A9	54.04	117	69.6	137.5
A10	48.17	87.5	71.3	81.3

>TRINITY_DN75270_c0_g1_i1 from sample A1 / Example spliced isoform

TTCTCCTTTTCCCTTCTTTGTGAAAAGAGCCTCATGGAGACGAATTTGAGCAAAGAAGATGAACTGAATCACCAAAATATGCAGGCCATGGTGCGCTCTACCAGAGCTCTTCATCTATTGCTGTCGTTGCAGTCCTTGTCCTCAGGAAGGAACCTAAAGTCCAAGCACAAGATTTCTGCATACGCTGAGGAGTCTCAAAT
GTATTCGGAGAAATATGAGCGGCTGATAGGAGCAATAAGGGTGCTAGAAGACGATCTTCGAGCAGAGCGCCGCAAGCTTAAACTTCTCAACACCTACAATGCGTATGCCGATATCGCCCGGCTTTGTTTATTCATAGCTGGAACCTGTGCAATACTGGTTTTCCTTTCTTAATTTGGTTCTTGCTTTATCTCTGTCTTAA
TAACAGACTTCAAATAGCCATTTTACCCCAATTGTGGCCATATTGTATTTTGCTCAAGAACGAAAGGGC

>TRINITY_DN75270_c0_g1_i2 from sample A1 / Example unspliced isoform:

TTCTCCTTTTCCCTTCTTTGTGAAAAGAGCCTCATGGAGACGAATTTGAGCAAAGAAGATGAACTGAATCACCAAAATATGCAGGCCATGGTGCGCTCTACCAGAGCTCTTCATCTATTGCTGTCGTTGCAGTCCTTGTCCTCAGGAAGGAACCTAAAGTCCAAGCACAAGATTTCTGCATACGCTGAGGAGTCTCAAAT
GTATTCGGAGgtatagataatagaatgaagcgcggcctgatgctttagattcaaacgaatttcagtgataatgcgtcaggtttgtgttcctttcgggttaaggtaatctgatgtgatttctgcatacatcatttctgcattgaatgacagAAATATGAGCGGCTGATAGGAGCAATAAGGGTGCTAGAAGACGATCTTCG
AGCAGAGCGCCGCAAGCTTAAACTTCTCAACACCTACAATGCGTATGCCGATATCGCCCGGCTTTGTTTATTCATAGCTGGAACCTGTGCAATACTGGTTTTCCTTTCTTAATTTGGTTCTTGCTTTATCTCTGTCTTAATAACAGACTTCAAATAGCCATTTTACCCCAATTGTGGCCATATTGTATTTTGCTCAAGAA
CGAAAGGGC