NA ----> NA
Intron 1 GTACGATCTA ... TGTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.33 | 70 | 3.4 | 25 |
| A2 | 25.37 | 64.8 | 5.6 | 22 |
| A3 | 26.03 | 91.2 | 4.8 | 32 |
| A4 | 22.06 | 67.2 | 11.8 | 19 |
| A5 | 31.6 | 28.2 | 0 | 13 |
| A6 | 22.13 | 800.4 | 7.8 | 227 |
| A7 | 19.31 | 775.2 | 6.8 | 185 |
| A8 | 21.23 | 770.2 | 10.4 | 207 |
| A9 | 21.16 | 881.2 | 3 | 236 |
| A10 | 19.28 | 571 | 2.4 | 136 |
>TRINITY_DN117477_c4_g1_i2 from sample A2 / Example spliced isoformTTGATTATCCATGTTTTGAACTTAAAAAAAAATGATTATCCATGTTTTGAACTCCACAATTTTTTTTTTCGGAAATTACTTAATTGAACTCCAAAATTGCCGATACTTACTCCAAAGAACACTACCTTTTCGGGTAAAAACAATGTGTGCAATGTGGCCATTTCTTACTGAGCTGTACACGTTAACTCTCGCATGTCTTT
TCAAACTCTATTAAAATAATGATGGGTGGAGTAGAAGGTCATTTCACCGTCTTGGCTAGCCTGTTTTCACAAGACTCAGGAATTGAAGAACTGGATAAATATGCACAGAAATACAACTGTTTGATCCGGGGTTTCTCTATCTTTATGAGGCCACACAATTGTGGACTATTCTGAATGATATCGAGAAAGAACTGTAGAAA
ATGGCAGTCGGGTTGCCTGCGACATTTCAGATGGCGGGGATGGTATGGCATGTTCTGAAGCATTGGATATTGCGGTGCATAGCAGCGGCCATTGAGATAGCCCATGCATTGCATGCAGGCGACATCGGACCCTTCCACGTTGGATAGCAAATAGCTTATCTGTGTAGTAGGTCAGGATCTTGTCAAGAGTTGTTATGCCT
CGTGTGGATTACTAGGACGTGATTTGGCAGTAGTCTATCTTATTTGTTAAAGTCATCATGAAAAAAGGATGTTGCGTGGAGCAAGCGCCTATACATAGGCAGTGGGAACAAAGGACATCAGCTAAATTTACCATGGCGTTCATCAATATGTAAATATTACAAGTAGGTTATTAAGGTTGGATCTATTGTGGAGGACCAAT
ATGTGCACATCATTATAATATAAAATATGAAACATGATAATTAAGATATCTTGCTCCCCATCGCCAAAGCAGTCAGGAGGAAGATGATAAATTTTTCTTTGATTTTCATGAAGTGTTTCCCTTGTATAAAATGTGTCCACTATCATACAAAAACAGGGAGTTAGGCGGAGTTTTTATAAACTTTGCTCTGTAGATCTGCT
GTGAGAGAATGAGTTAACATTTTTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCTCTTGGTGATCACAACTATTAACATTTTTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCT
>TRINITY_DN117477_c4_g1_i4 from sample A2 / Example unspliced isoform:TTTATAATTTCAGAAGTATCCATGTGAAACAGACAAAAGAAGGGTTGTGGTATACAAGCATATTTATTTGGCGTATATATATGTTGAAGAGGATTGTCCATTGCTTTGGAAAAATAGAAAATTGTAGATCTCGAGGACTAAAATGTTGGGAAGATTAGCATGAACTGAGGTGTGAGGACCGGTTAAGAAATATGCCGTGT
TTGTTGAAGTTTCTTGTTTGATGCAGGTCAGGATCTTGTCAAGAGTTGTTATGCCTCGTGTGGATTACTAGGACGTGATTTGGCAGTAGTCTATCTTATTTGTTgtacgatctacacaacccctttcattgatgcatttttggactgtatgttctgtgcaatagaaactcaaatgctctttggactgatgttctgtgcaa
tagaaactcaaatgctctttaaatgttctgcagAAAGTCATCATGAAAAAAGGATGTTGCGTGGAGCAAGCGCCTATACATAGGCAGTGGGAACAAAGGACATCAGCTAAATTTACCATGGCGTTCATCAATATGTAAATATTACAAGTAGGTTATTAAGGTTGGATCTATTGTGGAGGACCAATATGTGCACATCATTA
TAATATAAAATATGAAACATGATAATTAAGATATCTTGCTCCCCATCGCCAAAGCAGTCAGGAGGAAGATGATAAATTTTTCTTTGATTTTCATGAAGTGTTTCCCTTGTATAAAATGTGTCCACTATCATACAAAAACAGGGAGTTAGGCGGAGTTTTTATAAACTTTGCTCTGTAGATCTGCTGTGAGAGAATGAGTT
AACATTTTTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCTCTTGGTGATCACAACTATTAACATTTTTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCT
Intron 2 GTGGAGGTGG ... GGTTTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.41 | 63 | 25 | 23.2 |
| A2 | 35.9 | 50 | 28 | 11.8 |
| A3 | 34.11 | 85 | 44 | 15.5 |
| A4 | 31.25 | 66 | 30 | 14.5 |
| A5 | 35 | 39 | 21 | 5.3 |
| A6 | 32.78 | 804 | 392 | 162.5 |
| A7 | 30.26 | 749 | 325 | 162 |
| A8 | 28.17 | 691 | 271 | 137.8 |
| A9 | 31.73 | 827 | 384.3 | 168.7 |
| A10 | 32.8 | 624.3 | 304.7 | 130 |
>TRINITY_DN117477_c4_g1_i2 from sample A2 / Example spliced isoformTTGATTATCCATGTTTTGAACTTAAAAAAAAATGATTATCCATGTTTTGAACTCCACAATTTTTTTTTTCGGAAATTACTTAATTGAACTCCAAAATTGCCGATACTTACTCCAAAGAACACTACCTTTTCGGGTAAAAACAATGTGTGCAATGTGGCCATTTCTTACTGAGCTGTACACGTTAACTCTCGCATGTCTTT
TCAAACTCTATTAAAATAATGATGGGTGGAGTAGAAGGTCATTTCACCGTCTTGGCTAGCCTGTTTTCACAAGACTCAGGAATTGAAGAACTGGATAAATATGCACAGAAATACAACTGTTTGATCCGGGGTTTCTCTATCTTTATGAGGCCACACAATTGTGGACTATTCTGAATGATATCGAGAAAGAACTGTAGAAA
ATGGCAGTCGGGTTGCCTGCGACATTTCAGATGGCGGGGATGGTATGGCATGTTCTGAAGCATTGGATATTGCGGTGCATAGCAGCGGCCATTGAGATAGCCCATGCATTGCATGCAGGCGACATCGGACCCTTCCACGTTGGATAGCAAATAGCTTATCTGTGTAGTAGGTCAGGATCTTGTCAAGAGTTGTTATGCCT
CGTGTGGATTACTAGGACGTGATTTGGCAGTAGTCTATCTTATTTGTTAAAGTCATCATGAAAAAAGGATGTTGCGTGGAGCAAGCGCCTATACATAGGCAGTGGGAACAAAGGACATCAGCTAAATTTACCATGGCGTTCATCAATATGTAAATATTACAAGTAGGTTATTAAGGTTGGATCTATTGTGGAGGACCAAT
ATGTGCACATCATTATAATATAAAATATGAAACATGATAATTAAGATATCTTGCTCCCCATCGCCAAAGCAGTCAGGAGGAAGATGATAAATTTTTCTTTGATTTTCATGAAGTGTTTCCCTTGTATAAAATGTGTCCACTATCATACAAAAACAGGGAGTTAGGCGGAGTTTTTATAAACTTTGCTCTGTAGATCTGCT
GTGAGAGAATGAGTTAACATTTTTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCTCTTGGTGATCACAACTATTAACATTTTTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCT
>TRINITY_DN117477_c4_g1_i1 from sample A2 / Example unspliced isoform:TTGATTATCCATGTTTTGAACTTAAAAAAAAATGATTATCCATGTTTTGAACTCCACAATTTTTTTTTTCGGAAATTACTTAATTGAACTCCAAAATTGCCGATACTTACTCCAAAGAACACTACCTTTTCGGGTAAAAACAATGTGTGCAATGTGGCCATTTCTTACTGAGCTGTACACGTTAACTCTCGCATGTCTTT
TCAAACTCTATTAAAATAATGATGGGTGGAGTAGAAGGTCATTTCACCGTCTTGGCTAGCCTGTTTTCACAAGACTCAGGAATTGAAGAACTGGATAAATATGCACAGAAATACAACTGTTTGATCCGGGGTTTCTCTATCTTTATGAGGCCACACAATTGTGGACTATTCTGAATGATATCGAGAAAGAACTGTAGAAA
ATGGCAGTCGGGTTGCCTGCGACATTTCAGATGGCGGGGATGGTATGGCATGTTCTGAAGCATTGGATATTGCGGTGCATAGCAGCGGCCATTGAGATAGCCCATGCATTGCATGCAGGCGACATCGGACCCTTCCACGTTGGATAGCAAATAGCTTATCTGTGTAGTAGgtggaggtggaattagtagctttgatgcct
ggatttaaaggtttgaaagGTCAGGATCTTGTCAAGAGTTGTTATGCCTCGTGTGGATTACTAGGACGTGATTTGGCAGTAGTCTATCTTATTTGTTGTACGATCTACACAACCCCTTTCATTGATGCATTTTTGGACTGTATGTTCTGTGCAATAGAAACTCAAATGCTCTTTGGACTGATGTTCTGTGCAATAGAAAC
TCAAATGCTCTTTAAATGTTCTGCAGAAAGTCATCATGAAAAAAGGATGTTGCGTGGAGCAAGCGCCTATACATAGGCAGTGGGAACAAAGGACATCAGCTAAATTTACCATGGCGTTCATCAATATGTAAATATTACAAGTAGGTTATTAAGGTTGGATCTATTGTGGAGGACCAATATGTGCACATCATTATAATATA
AAATATGAAACATGATAATTAAGATATCTTGCTCCCCATCGCCAAAGCAGTCAGGAGGAAGATGATAAATTTTTCTTTGATTTTCATGAAGTGTTTCCCTTGTATAAAATGTGTCCACTATCATACAAAAACAGGGAGTTAGGCGGAGTTTTTATAAACTTTGCTCTGTAGATCTGCTGTGAGAGAATGAGTTAACATTT
TTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCTCTTGGTGATCACAACTATTAACATTTTTTTATTTCTAATTATCTCCAGACGAACAGATTTGGTATTCT